MD16G1187300.v1.1

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014046
Physical Location & Seq
Reverse (-)
16233153 .. 16234193
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1187300.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGCGACAATCGTGTGCCAAGGTCTGCAGTCATGCCTGGAGTCTCCTCATCTTGTGGAGCCAAGAACCCTAAGGCTAAAGTTTTCGGCACCAGTAGCTCATCACATCTCTCCAATTCGCACCCAAGAATTAGGAATCAAGGGTTGTTTCTCTGAAGAGAAATGCAATAATTATGAGGAAATCAACAGCAATAAGGCCACCTCCGAAAAATCTGACTTGGTAGGTGGCTGGAGTTTCCTCCAAGCTATCTCCAAACCCTCACTAGAAAACCCTACTGCTGAGGTGGACGAAGAAAATACTTACACCCCTCCTAGGGTTTACAGGACCTCATCAGTTACCAAGCTAAATGAGAAGAGCTTGGAGATGTGCACCGAAGACTTAGGCTGCGAGACCGGCGCCATTATCACAGAAAGCTTCAGCATTTTCTCACCAACGCCTGAATCAGAATCGAATGCTGTGCCAAGGGAGCGACAAAATAAGCCTAAATTTTCGGGTGGAAAAAAGGCGAATAATATTCATGGTTTCCCACCTCCGTTGACAACAATAAGTGGTGAGGATTCTCTACAAGTTAGGCCTCACAGGGAAGATGGTAGGCTGATCATGAAGGCTGTCAAGGCCCCTTCAAGTCATACATTCTTCCAAGCTGAAAGGAGCAATGGCCGCCTTCGATTGTGCTTTTCAAAAACCTTTTCTCCCAGTTTTGACTCAGAAGAAGCAGCAGCCACTCATGAATACAATGAAGGGTGTAAAAATGAAGCATGTGAAAATGACATCAATGAGGAAGCAGAACAAGATCAAGAAGAAGTCGAAGAAAATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTAAGACATCAAATGTGTGCTTGATGGAAGGTGAGGAGGTGGATGGGAATAGTTTGAATGTTGGGGGTGAAGAGGGAATGGACAAGTTTAAAAGGCCAAGCAGGTGCAAAGAGGGTGGTGGTGAGTGTGAGGAGAAAGGATGGTTAAAGTATTGGGAGCCCCATTGGGTGTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

347

Amino Acids

38.74

Weight (kDa)

4.68

Isoelectric Point (pI)

70.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 175 - 226 9.6e-23 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 954
AccB1I GGYRCC 2 cut(s) 88, 395
AccI GTMKAC 1 cut(s) 1034
AciI CCGC 1 cut(s) 661
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 174, 400
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 312, 313
AgsI TTSAA 3 cut(s) 624, 681, 919
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 6 cut(s) 98, 245, 343, 357, 414, 644
AluI AGCT 6 cut(s) 98, 245, 343, 357, 414, 644
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 48, 383
Alw44I GTGCAC 1 cut(s) 367
AoxI GGCC 5 cut(s) 195, 572, 615, 658, 956
ApaLI GTGCAC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 384, 716, 719
ApoI RAATTY 1 cut(s) 485
AspA2I CCTAGG 1 cut(s) 311
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 324, 616
AsuHPI GGTGA 5 cut(s) 420, 563, 905, 941, 995
AvaII GGWCC 1 cut(s) 324
AvrII CCTAGG 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 371
BanI GGYRCC 2 cut(s) 88, 395
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 371, 728, 731
BccI CCATC 4 cut(s) 581, 880, 899, 996
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 2 cut(s) 48, 383
BfaI CTAG 2 cut(s) 263, 312
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 954
BisI GCNGC 4 cut(s) 385, 661, 717, 720
BlnI CCTAGG 1 cut(s) 311
BlsI GCNGC 4 cut(s) 386, 662, 718, 721
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 2 cut(s) 324, 616
BmiI GGNNCC 5 cut(s) 60, 90, 397, 618, 1020
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 690
BmuI ACTGGG 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 2 cut(s) 59, 250
Bpu10I CCTNAGC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 19, 311, 461
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 313
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 92, 696
Bse21I CCTNAGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 19, 311, 461
BseGI GGATG 2 cut(s) 910, 1007
BseLI CCNNNNNNNGG 2 cut(s) 312, 313
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 270, 720
BseNI ACTGG 2 cut(s) 92, 696
BseRI GAGGAG 3 cut(s) 36, 911, 1007
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 3 cut(s) 371, 728, 731
BshFI GGCC 5 cut(s) 197, 574, 617, 660, 958
BshNI GGYRCC 2 cut(s) 88, 395
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 312, 313
BsmAI GTCTC 2 cut(s) 48, 383
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 5 cut(s) 197, 574, 617, 660, 958
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 371, 1023
Bsp143I GATC 2 cut(s) 597, 793
BspACI CCGC 1 cut(s) 661
BspANI GGCC 5 cut(s) 197, 574, 617, 660, 958
BspCNI CTCAG 2 cut(s) 271, 719
BspHI TCATGA 2 cut(s) 600, 727
BspLI GGNNCC 5 cut(s) 60, 90, 397, 618, 1020
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 954
BspQI GCTCTTC 1 cut(s) 347
BspT107I GGYRCC 2 cut(s) 88, 395
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 92, 696
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 3 cut(s) 19, 311, 461
BssMI GATC 2 cut(s) 597, 793
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 3 cut(s) 19, 311, 461
Bst2UI CCWGG 1 cut(s) 38
Bst6I CTCTTC 3 cut(s) 150, 347, 927
BstACI GRCGYC 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 71, 279, 379, 706
BstF5I GGATG 2 cut(s) 910, 1007
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 2 cut(s) 600, 796
BstMAI GTCTC 2 cut(s) 48, 383
BstMBI GATC 2 cut(s) 597, 793
BstMWI GCNNNNNNNGC 5 cut(s) 95, 393, 466, 614, 660
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 762
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 371, 728, 731
BstV2I GAAGAC 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 71
BsuRI GGCC 5 cut(s) 197, 574, 617, 660, 958
BtsCI GGATG 2 cut(s) 910, 1007
BveI ACCTGC 1 cut(s) 954
CciI TCATGA 2 cut(s) 600, 727
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 324, 616
CspCI CAANNNNNGTGG 4 cut(s) 516, 551, 958, 993
CviAII CATG 5 cut(s) 33, 518, 601, 728, 759
DdeI CTNAG 4 cut(s) 71, 279, 379, 706
DinI GGCGCC 1 cut(s) 397
DpnI GATC 2 cut(s) 599, 795
DpnII GATC 2 cut(s) 597, 793
DraI TTTAAA 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 658
Eam1104I CTCTTC 3 cut(s) 150, 347, 927
EarI CTCTTC 3 cut(s) 150, 347, 927
Eco130I CCWWGG 3 cut(s) 19, 311, 461
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 174, 400
Eco81I CCTNAGG 1 cut(s) 71
EcoO109I RGGNCCY 2 cut(s) 324, 616
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 3 cut(s) 19, 311, 461
EcoT38I GRGCYC 1 cut(s) 1023
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
ErhI CCWWGG 3 cut(s) 19, 311, 461
FaeI CATG 5 cut(s) 36, 521, 604, 731, 762
FaiI YATR 7 cut(s) 34, 174, 519, 602, 630, 729, 760
FatI CATG 5 cut(s) 32, 517, 600, 727, 758
FbaI TGATCA 1 cut(s) 597
FblI GTMKAC 1 cut(s) 1034
Fnu4HI GCNGC 4 cut(s) 385, 661, 717, 720
FokI GGATG 2 cut(s) 917, 1014
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 4 cut(s) 385, 661, 717, 720
FspBI CTAG 2 cut(s) 263, 312
GlaI GCGC 1 cut(s) 397
GluI GCNGC 4 cut(s) 385, 661, 717, 720
GsuI CTGGAG 2 cut(s) 59, 250
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 5 cut(s) 197, 574, 617, 660, 958
HapII CCGG 1 cut(s) 393
HhaI GCGC 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 5 cut(s) 36, 521, 604, 731, 762
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 6 cut(s) 41, 135, 440, 446, 557, 704
HpaII CCGG 1 cut(s) 393
HphI GGTGA 5 cut(s) 420, 563, 905, 941, 995
Hpy166II GTNNAC 5 cut(s) 286, 319, 369, 537, 1035
Hpy188I TCNGA 5 cut(s) 154, 205, 214, 445, 709
Hpy188III TCNNGA 3 cut(s) 601, 728, 797
Hpy8I GTNNAC 5 cut(s) 286, 319, 369, 537, 1035
HpyAV CCTTC 6 cut(s) 598, 630, 674, 734, 854, 884
HpyCH4V TGCA 4 cut(s) 28, 165, 369, 969
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 393, 466, 614, 660
HpyF3I CTNAG 4 cut(s) 71, 279, 379, 706
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 5 cut(s) 36, 521, 604, 731, 762
HspAI GCGC 1 cut(s) 396
KasI GGCGCC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 2 cut(s) 597, 793
LguI GCTCTTC 1 cut(s) 347
LmnI GCTCC 4 cut(s) 58, 466, 651, 1018
Lsp1109I GCAGC 3 cut(s) 371, 728, 731
MaeI CTAG 2 cut(s) 263, 312
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 599, 795
MboI GATC 2 cut(s) 597, 793
MhlI GDGCHC 2 cut(s) 371, 1023
MluCI AATT 4 cut(s) 114, 128, 169, 485
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 2 cut(s) 50, 698
MseI TTAA 3 cut(s) 951, 1007, 1039
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 5 cut(s) 95, 393, 466, 614, 660
NarI GGCGCC 1 cut(s) 396
NdeII GATC 2 cut(s) 597, 793
NlaIII CATG 5 cut(s) 36, 521, 604, 731, 762
NlaIV GGNNCC 5 cut(s) 60, 90, 397, 618, 1020
NspI RCATGY 1 cut(s) 762
PagI TCATGA 2 cut(s) 600, 727
PaqCI CACCTGC 1 cut(s) 954
PceI AGGCCT 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 347
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 135, 440, 446, 557
PkrI GCNGC 4 cut(s) 386, 662, 718, 721
PleI GAGTC 2 cut(s) 49, 698
PluTI GGCGCC 1 cut(s) 399
PpsI GAGTC 2 cut(s) 49, 698
PpuMI RGGWCCY 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 5 cut(s) 60, 90, 397, 618, 1020
PspPI GGNCC 2 cut(s) 324, 616
PspPPI RGGWCCY 1 cut(s) 324
PstI CTGCAG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 347
SaqAI TTAA 3 cut(s) 951, 1007, 1039
SatI GCNGC 4 cut(s) 385, 661, 717, 720
Sau3AI GATC 2 cut(s) 597, 793
Sau96I GGNCC 2 cut(s) 324, 616
SchI GAGTC 2 cut(s) 50, 698
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 371, 1023
SfcI CTRYAG 1 cut(s) 26
SfoI GGCGCC 1 cut(s) 397
SinI GGWCC 1 cut(s) 324
Sse9I AATT 4 cut(s) 114, 128, 169, 485
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 1 cut(s) 661
SspDI GGCGCC 1 cut(s) 395
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 263, 312
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 3 cut(s) 19, 311, 461
TaqI TCGA 3 cut(s) 449, 667, 807
TasI AATT 4 cut(s) 114, 128, 169, 485
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 4 cut(s) 135, 440, 446, 557
Tru1I TTAA 3 cut(s) 951, 1007, 1039
Tru9I TTAA 3 cut(s) 951, 1007, 1039
TseI GCWGC 3 cut(s) 384, 716, 719
TspDTI ATGAA 5 cut(s) 506, 617, 744, 753, 768
TspGWI ACGGA 1 cut(s) 522
VneI GTGCAC 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 762
XmaJI CCTAGG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 1034
XspI CTAG 2 cut(s) 263, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.