Rroxscaffold_5G00360980

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014046
Physical Location & Seq
Forward (+)
41631632 .. 41632621
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360980.1

Sequence Viewer

Length: 990 bp
ATGGCTACGATTGTATGTCAAGGTTTACAGTCATGCCTACAGGAGCCACAGCTTGTAGAGCCAAGAACACTAAGGCTAAAACTCTCTTCGTCGATACCCCATCATCTTTTTTCAGCAACACCTTTAGAACTAGGCTTCAAATCTTTTCTTTCATCCGAGTCTAACCACATAAAAGAGCTTAGTCATGAAGAGAAATGCCACTATGACAAACCCGCCACCAAGAACTCTGACTTGGGTGGCTGGAGTTTCCTCCAATCTATCTCCAACAACAGTTCCCAACAACAAAACCCTCCAACCCCGGTTTACAATAAGCGCTCATCATCGGTTACTAGGCTGAATGAGAAGAGCTTGGAGCTGTGCACTGAAAACTTGGGCAATGAGACTGGCACCATCTTCATCGAAAACAGTATTTTCGAGTCGAATGATAAGAGTTTGGTGAAGAGGGATCAGCAGAAGCAGAGTAAAACCTTGGGAAGCAAGAAATCTGCTAATGTTCATAATTTTCCTCCTCCACTAACCACGATAAGCGGCTCGGAGTCTCTACAAGTCAGACCACACAGGGAACACGGTCGGCTAATACTCAAGGCTGTCAAGGCCCCATTGACACATAATTGTTTCCAAGCGGAGAGAAGCAATGGCCGCCTTCGGTTATGCTTTTCCAAAGACTTCTTTGCTCCTAATTTTGACTCCGAGTCACAAACCGCAGCCAATCAAGAAGACATTGAAGCAAACAGTGGTGAGGATAATGACAATGAAGGATACGAAAATGATAGGGATGACGAACAAGAAGTGGGGGACATTGACAAAGTAGTTTTGGGAGAACAAGAAGGCCGAGTGTGTTTGGTTGAGGAGTTGGAAGAAAATAGTTTGAAAGTTGGGGGTGAAGAGGGAGTGGACAAGTTCGGAAGGCCAAGCAGATGCAAAGAAGGTGGTGAGCATGAGAAGAAAGGGCTGCTAAACTTTGAGCCTTTTAATTGGGTGGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

329

Amino Acids

36.76

Weight (kDa)

5.34

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 167 - 219 1.8e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 5 cut(s) 213, 528, 623, 640, 702
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 637
AfeI AGCGCT 1 cut(s) 314
AgsI TTSAA 3 cut(s) 139, 725, 871
AhdI GACNNNNNGTC 1 cut(s) 691
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 4 cut(s) 52, 178, 348, 355
AluI AGCT 4 cut(s) 52, 178, 348, 355
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 374, 543
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 1 cut(s) 453
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 4 cut(s) 594, 637, 829, 908
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 704, 952
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 4 cut(s) 448, 749, 893, 944
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 716, 939
BccI CCATC 2 cut(s) 108, 398
BciVI GTATCC 1 cut(s) 752
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 374, 543
BfaI CTAG 2 cut(s) 131, 330
BfmI CTRYAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 316
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 4 cut(s) 529, 640, 705, 953
BlsI GCNGC 4 cut(s) 530, 641, 706, 954
Bme1390I CCNGG 1 cut(s) 299
BmeRI GACNNNNNGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 45, 388, 597
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 297, 468
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 382, 640
BseDI CCNNGG 2 cut(s) 297, 468
BseGI GGATG 2 cut(s) 152, 781
BseMI GCAATG 2 cut(s) 382, 640
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 2 cut(s) 498, 863
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 2 cut(s) 716, 939
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 4 cut(s) 596, 639, 831, 910
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 809
BsmAI GTCTC 2 cut(s) 374, 543
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 4 cut(s) 596, 639, 831, 910
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 5 cut(s) 213, 528, 623, 640, 702
BspANI GGCC 4 cut(s) 596, 639, 831, 910
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 45, 388, 597
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 382, 640
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 297, 468
BssMI GATC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 468
Bst4CI ACNGT 5 cut(s) 30, 272, 407, 569, 734
Bst6I CTCTTC 5 cut(s) 91, 183, 338, 434, 879
BstDEI CTNAG 2 cut(s) 71, 179
BstF5I GGATG 2 cut(s) 152, 781
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 374, 543
BstMBI GATC 1 cut(s) 445
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 3 cut(s) 58, 593, 639
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 716, 939
BstV2I GAAGAC 1 cut(s) 723
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 4 cut(s) 596, 639, 831, 910
BtsCI GGATG 2 cut(s) 152, 781
BtsIMutI CAGTG 2 cut(s) 360, 739
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 595
CspCI CAANNNNNGTGG 2 cut(s) 910, 945
CviAII CATG 3 cut(s) 33, 185, 938
DdeI CTNAG 2 cut(s) 71, 179
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DriI GACNNNNNGTC 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 5 cut(s) 91, 183, 338, 434, 879
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 5 cut(s) 91, 183, 338, 434, 879
Eco130I CCWWGG 1 cut(s) 468
Eco47III AGCGCT 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 3 cut(s) 36, 188, 941
FaiI YATR 9 cut(s) 16, 34, 170, 186, 204, 498, 609, 652, 939
FaqI GGGAC 1 cut(s) 809
FatI CATG 3 cut(s) 32, 184, 937
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 529, 640, 705, 953
FokI GGATG 2 cut(s) 139, 788
Fsp4HI GCNGC 4 cut(s) 529, 640, 705, 953
FspBI CTAG 2 cut(s) 131, 330
GlaI GCGC 1 cut(s) 314
GluI GCNGC 4 cut(s) 529, 640, 705, 953
GsuI CTGGAG 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 4 cut(s) 596, 639, 831, 910
HapII CCGG 1 cut(s) 299
HhaI GCGC 1 cut(s) 315
Hin1II CATG 3 cut(s) 36, 188, 941
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 5 cut(s) 158, 416, 536, 686, 692
HpaII CCGG 1 cut(s) 299
HphI GGTGA 4 cut(s) 448, 749, 893, 944
Hpy166II GTNNAC 4 cut(s) 26, 304, 360, 895
Hpy188I TCNGA 6 cut(s) 157, 229, 535, 551, 691, 905
Hpy188III TCNNGA 2 cut(s) 185, 713
Hpy8I GTNNAC 4 cut(s) 26, 304, 360, 895
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 5 cut(s) 653, 749, 821, 900, 920
HpyCH4III ACNGT 5 cut(s) 30, 272, 407, 569, 734
HpyCH4V TGCA 2 cut(s) 360, 921
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 593, 639
HpyF3I CTNAG 2 cut(s) 71, 179
Hsp92II CATG 3 cut(s) 36, 188, 941
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 43, 352, 679
LpnPI CCDG 5 cut(s) 26, 226, 312, 369, 544
Lsp1109I GCAGC 2 cut(s) 716, 939
LweI GCATC 1 cut(s) 908
MaeI CTAG 2 cut(s) 131, 330
MaeIII GTNAC 2 cut(s) 325, 693
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 9 cut(s) 78, 200, 355, 385, 451, 728, 869, 896, 955
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 4 cut(s) 499, 610, 679, 973
MlyI GAGTC 5 cut(s) 167, 425, 545, 680, 701
MmeI TCCRAC 3 cut(s) 288, 317, 834
MnlI CCTC 8 cut(s) 260, 300, 435, 516, 519, 733, 841, 880
MseI TTAA 1 cut(s) 972
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 58, 593, 639
NciI CCSGG 1 cut(s) 299
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 36, 188, 941
NlaIV GGNNCC 3 cut(s) 45, 388, 597
NmeAIII GCCGAG 1 cut(s) 857
NmuCI GTSAC 1 cut(s) 693
PagI TCATGA 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 338
PkrI GCNGC 4 cut(s) 530, 641, 706, 954
PleI GAGTC 5 cut(s) 166, 424, 544, 680, 700
PpsI GAGTC 5 cut(s) 166, 424, 544, 680, 700
PspN4I GGNNCC 3 cut(s) 45, 388, 597
PspPI GGNCC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 972
SatI GCNGC 4 cut(s) 529, 640, 705, 953
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 5 cut(s) 167, 425, 545, 680, 701
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 362
SetI ASST 8 cut(s) 25, 54, 124, 180, 350, 357, 470, 931
SfaNI GCATC 1 cut(s) 908
SfcI CTRYAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 4 cut(s) 499, 610, 679, 973
SsiI CCGC 5 cut(s) 213, 528, 623, 640, 702
SspMI CTAG 2 cut(s) 131, 330
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 5 cut(s) 30, 272, 407, 569, 734
TaqI TCGA 4 cut(s) 92, 399, 414, 419
TasI AATT 4 cut(s) 499, 610, 679, 973
TauI GCSGC 2 cut(s) 531, 642
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TscAI CASTG 2 cut(s) 367, 739
TseFI GTSAC 1 cut(s) 693
TseI GCWGC 2 cut(s) 704, 952
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 5 cut(s) 141, 201, 385, 485, 768
TspRI CASTG 2 cut(s) 367, 739
VneI GTGCAC 1 cut(s) 358
XspI CTAG 2 cut(s) 131, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.