RLG00000007925

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014046
Physical Location & Seq
Reverse (-)
23005130 .. 23006128
999 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007925

Sequence Viewer

Length: 999 bp
ATGGCTACGATTGTATGTCAAGGTTTACAGTCATGCCTACAGGAGCCACAGCTTGTAGAGCCAAGAACACTAAGGCTAAAACTCTCTTCGTCGATACCCCATCATCTTTTTTCAGCAACACCTTTAGAACTAGGCTTCAAATCTTTTCTTTTATCAGAGTCTAACCACATAAAAGAGCTTAGTCATGAAGAGAAATGCCACTATGACAAACCCGCCACCAAGAACTCTGACTTGGGTGGCTGGAGTTTCCTCCAATCTATCTCCAACAACAGTTCCCAACAGCAAAACCCTCCAACCACGGTTTACAATAAGCGGTCATCATCGGTTACTAGGCTGAATGAGAAGAGCTTGGAGCTGTGCACTGAAAACTTGGGCAATGAGACTGGCACCATCTTCATCGAAAACAGTATTTTCGAGTCGAATGATAAGAGTTTGGTGAAGAGGGATCAGCAGAAGCAGAGTAAAAGCTTGGGAAGCAAGAAATCTGCTAATGTTCATAATTTTCCTCCTCCACTAACCACGATAAGCGGCTCGGAGTCTCTACAAGTCAGACCACACAGGGAAGACGGTCGGCTAATACTCAAGGCTGTCAAGGCCCCATTGATACATAATTGTTTCCAAGCGGAGAGAAGCAATGGCCGCCTTCGGTTATGCTTTTCCAAAGACTTCTTTGCTCCTAAGTTTGACTCCGAGTCACAAACCGCAGCCAATCAAGAAGACATTGAAGCAAACAGTGGTGAGGATAATGAAAATGAAGGATACGAAAATGATAGGGATGACGAACAAGAAGAACAAGAAGTGGGGGACATTGACAAAGTAGTTTTGGGAGAACAAGAAGGTCGAGTGTGTTTGGTTGAGGAGTTGGAAGAAAATAGTTTGCAAGTTGGGGGTGAAGAGGGAATGGACAAGTTCGGAAGGCCAAGCAGATGCAAAGAAGGTGGTGAGCATGAGAAGAAAGGACTGTTAAACTTTGAGCCTTTTAATTGGGTGGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

333

Amino Acids

37.21

Weight (kDa)

5.12

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 167 - 219 6.9e-23 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 6 cut(s) 213, 313, 528, 623, 640, 702
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 637
AgsI TTSAA 2 cut(s) 139, 725
AhdI GACNNNNNGTC 1 cut(s) 691
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 5 cut(s) 52, 178, 348, 355, 468
AluI AGCT 5 cut(s) 52, 178, 348, 355, 468
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 374, 543
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 1 cut(s) 453
AoxI GGCC 3 cut(s) 594, 637, 917
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 704
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 4 cut(s) 448, 749, 902, 953
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 2 cut(s) 570, 723
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 716
BccI CCATC 2 cut(s) 108, 398
BciVI GTATCC 1 cut(s) 752
BcoDI GTCTC 2 cut(s) 374, 543
BfaI CTAG 2 cut(s) 131, 330
BfmI CTRYAG 1 cut(s) 38
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 3 cut(s) 529, 640, 705
BlsI GCNGC 3 cut(s) 530, 641, 706
BmeRI GACNNNNNGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 45, 388, 597
BmsI GCATC 1 cut(s) 917
BpiI GAAGAC 2 cut(s) 570, 723
BpmI CTGGAG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 382, 640
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 781
BseMI GCAATG 2 cut(s) 382, 640
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 2 cut(s) 498, 872
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 1 cut(s) 716
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 3 cut(s) 596, 639, 919
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 362
BslFI GGGAC 1 cut(s) 818
BsmAI GTCTC 2 cut(s) 374, 543
BsmFI GGGAC 1 cut(s) 818
BsnI GGCC 3 cut(s) 596, 639, 919
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 6 cut(s) 213, 313, 528, 623, 640, 702
BspANI GGCC 3 cut(s) 596, 639, 919
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 45, 388, 597
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 382, 640
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 445
Bst4CI ACNGT 7 cut(s) 30, 272, 301, 407, 569, 734, 963
Bst6I CTCTTC 5 cut(s) 91, 183, 338, 434, 888
BstDEI CTNAG 3 cut(s) 71, 179, 678
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 781
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 374, 543
BstMBI GATC 1 cut(s) 445
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 58, 474, 593, 639
BstSFI CTRYAG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 716
BstV2I GAAGAC 2 cut(s) 570, 723
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 3 cut(s) 596, 639, 919
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 360, 739
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 595
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 3 cut(s) 33, 185, 947
DdeI CTNAG 3 cut(s) 71, 179, 678
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DriI GACNNNNNGTC 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 5 cut(s) 91, 183, 338, 434, 888
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 5 cut(s) 91, 183, 338, 434, 888
EcoO109I RGGNCCY 1 cut(s) 595
FaeI CATG 3 cut(s) 36, 188, 950
FaiI YATR 9 cut(s) 16, 34, 170, 186, 204, 498, 609, 652, 948
FaqI GGGAC 1 cut(s) 818
FatI CATG 3 cut(s) 32, 184, 946
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 529, 640, 705
FokI GGATG 1 cut(s) 788
Fsp4HI GCNGC 3 cut(s) 529, 640, 705
FspBI CTAG 2 cut(s) 131, 330
GluI GCNGC 3 cut(s) 529, 640, 705
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 3 cut(s) 596, 639, 919
Hin1II CATG 3 cut(s) 36, 188, 950
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 5 cut(s) 158, 416, 536, 686, 692
HphI GGTGA 4 cut(s) 448, 749, 902, 953
Hpy166II GTNNAC 3 cut(s) 26, 304, 360
Hpy188I TCNGA 6 cut(s) 157, 229, 535, 551, 691, 914
Hpy188III TCNNGA 2 cut(s) 185, 713
Hpy8I GTNNAC 3 cut(s) 26, 304, 360
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 5 cut(s) 653, 749, 830, 909, 929
HpyCH4III ACNGT 7 cut(s) 30, 272, 301, 407, 569, 734, 963
HpyCH4V TGCA 3 cut(s) 360, 880, 930
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 474, 593, 639
HpyF3I CTNAG 3 cut(s) 71, 179, 678
Hsp92II CATG 3 cut(s) 36, 188, 950
Kzo9I GATC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 43, 352, 679
LpnPI CCDG 4 cut(s) 26, 226, 369, 544
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 1 cut(s) 917
MaeI CTAG 2 cut(s) 131, 330
MaeIII GTNAC 2 cut(s) 325, 693
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 3 cut(s) 499, 610, 982
MlyI GAGTC 5 cut(s) 167, 425, 545, 680, 701
MmeI TCCRAC 3 cut(s) 288, 317, 843
MnlI CCTC 8 cut(s) 260, 300, 435, 516, 519, 733, 850, 889
MseI TTAA 2 cut(s) 965, 981
MwoI GCNNNNNNNGC 4 cut(s) 58, 474, 593, 639
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 36, 188, 950
NlaIV GGNNCC 3 cut(s) 45, 388, 597
NmuCI GTSAC 1 cut(s) 693
PagI TCATGA 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 530, 641, 706
PleI GAGTC 5 cut(s) 166, 424, 544, 680, 700
PpsI GAGTC 5 cut(s) 166, 424, 544, 680, 700
PspN4I GGNNCC 3 cut(s) 45, 388, 597
PspPI GGNCC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 965, 981
SatI GCNGC 3 cut(s) 529, 640, 705
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 5 cut(s) 167, 425, 545, 680, 701
SduI GDGCHC 1 cut(s) 362
SetI ASST 9 cut(s) 25, 54, 124, 180, 350, 357, 470, 841, 940
SfaNI GCATC 1 cut(s) 917
SfcI CTRYAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 3 cut(s) 499, 610, 982
SsiI CCGC 6 cut(s) 213, 313, 528, 623, 640, 702
SspMI CTAG 2 cut(s) 131, 330
TaaI ACNGT 7 cut(s) 30, 272, 301, 407, 569, 734, 963
TaqI TCGA 5 cut(s) 92, 399, 414, 419, 841
TasI AATT 3 cut(s) 499, 610, 982
TauI GCSGC 2 cut(s) 531, 642
Tru1I TTAA 2 cut(s) 965, 981
Tru9I TTAA 2 cut(s) 965, 981
TscAI CASTG 2 cut(s) 367, 739
TseFI GTSAC 1 cut(s) 693
TseI GCWGC 1 cut(s) 704
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 5 cut(s) 201, 385, 485, 762, 768
TspRI CASTG 2 cut(s) 367, 739
VneI GTGCAC 1 cut(s) 358
XspI CTAG 2 cut(s) 131, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.