AT3G06070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012980
Physical Location & Seq
Reverse (-)
1830970 .. 1832190
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06070.1

Sequence Viewer

Length: 456 bp
ATGGCCATGGAGCTCGAGCTTGATGATGATGTCTTCTTTGCTGACATAAGCAAGCAACTCAATCTCTTAATCACAGATGAAGATGAACAAAACCCTATTTCACTTTCCTCTTCTGTCTCTTTCCAGGGTTTGTTCAGAGGAAACTACCAAACATCAGCAACACCATATATGATGTACAATGAGCAGATCAATTACAACGTAATTCGAGAGAGCAAAGGAACAGGAGTGTTTATCCCAAGATCTTCTCAGCCAAGAAGGAAACATAATCATCATCCTCATCAGAAGAAGCAAGGGAGATTCATCGGTTCCTTTATCCCCAAGCAACAGTTTCCTCATCATGGCCATGACAACAATCTTACAACTCTCAACAACAACAACCAAGAAAGCATCACCTTTCATCATGCTTCTACTAACCCAAGAAGAACCTACAGAGATGCAGCATCTCTTTTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.45

Weight (kDa)

7.14

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06070 AT5G19190
fragaria_vesca FvH4_4g14800
malus_domestica MD13G1185600.v1.1
prunus_persica Prupe.1G153300_v2.0.a1 Prupe.1G153300_v2.0.a1
pyrus_communis pycom13g16010 pycom16g15620
rosa_chinensis RchiOBHm_Chr4g0417511
rosa_laevigata RLG00000007901
rosa_multiflora Rmu_sc0004142.1_g000012
rosa_roxburghii Rroxscaffold_5G00361190
rosa_rugosa Rorug04G0148600
rosa_samantha Rh4AG211500 Rh4BG211800 Rh4CG222200 Rh4DG209400
rosa_wichuraiana Rw4G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 3, 340
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 338
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 2 cut(s) 13, 19
AluI AGCT 2 cut(s) 13, 19
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 3, 340
ApeKI GCWGC 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 14
BalI TGGCCA 2 cut(s) 5, 342
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 239
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 396, 424, 449
BpiI GAAGAC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 6, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 338
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 6, 124
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 449
BshFI GGCC 2 cut(s) 5, 342
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 121
BsnI GGCC 2 cut(s) 5, 342
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 15
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 186, 239
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 2 cut(s) 5, 342
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 307
BsrGI TGTACA 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 6, 124
BssMI GATC 2 cut(s) 186, 239
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 246, 453
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 189, 242
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 186, 239
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 5, 342
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 175
CviAII CATG 4 cut(s) 7, 338, 344, 401
CviJI RGCY 5 cut(s) 5, 13, 19, 250, 342
CviKI_1 RGCY 5 cut(s) 5, 13, 19, 250, 342
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 246, 453
DpnI GATC 2 cut(s) 188, 241
DpnII GATC 2 cut(s) 186, 239
EaeI YGGCCR 2 cut(s) 3, 340
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 10, 341, 347, 404
FaiI YATR 9 cut(s) 8, 47, 166, 168, 170, 264, 339, 345, 402
FatI CATG 4 cut(s) 6, 337, 343, 400
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 5, 342
Hin1II CATG 4 cut(s) 10, 341, 347, 404
HinfI GANTC 1 cut(s) 297
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 137, 282
Hpy188III TCNNGA 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 246, 453
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 4 cut(s) 10, 341, 347, 404
Kzo9I GATC 2 cut(s) 186, 239
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 110, 137, 207
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 3 cut(s) 396, 424, 449
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 188, 241
MboI GATC 2 cut(s) 186, 239
MboII GAAGA 6 cut(s) 25, 92, 102, 234, 295, 432
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 2 cut(s) 5, 342
MluCI AATT 2 cut(s) 190, 201
MluNI TGGCCA 2 cut(s) 5, 342
MnlI CCTC 4 cut(s) 118, 131, 285, 342
Mox20I TGGCCA 2 cut(s) 5, 342
MscI TGGCCA 2 cut(s) 5, 342
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 2 cut(s) 5, 342
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 186, 239
NlaIII CATG 4 cut(s) 10, 341, 347, 404
NlaIV GGNNCC 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 14
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 14
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 186, 239
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 15
SetI ASST 5 cut(s) 15, 21, 201, 395, 428
SfaNI GCATC 3 cut(s) 396, 424, 449
SfcI CTRYAG 1 cut(s) 427
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 190, 201
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 15, 205
TasI AATT 2 cut(s) 190, 201
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 4 cut(s) 93, 99, 289, 386
XhoI CTCGAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.