pycom16g15620

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
11603506 .. 11604209
704 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15620.1

Sequence Viewer

Length: 369 bp
ATGGAAGTTGCCATGGAGAAACTAGAAGACGACTTGTTCTTTGCAGACTTAACTAAGCAAATCTCTCTTCTAATCATGGATGATGAGGAGGATCCTATCGCAACTTCCCCTTCAGTTTCTCTTCAGGCTTTCTCTTGTGCAATCCACCCACCTGCACATCCTGCCCTTCTGTATGAGCAATCCTGCAAGAGAGAAACCAAAGGAACTGGAGTTTTCATCCCACAATCAATACGTCCAAGAAGAAAGCACAGGCAGGGAAGGTTTGCCTCATGCAACTCAAAATCCCACAGATCGTCACAAGCTGATCACAACAAGACGATGGTTTCCCAAGCATCTTCCGACTGCGCTTTTAGACCGAAAAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.61

Weight (kDa)

7.73

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 160
AclWI GGATC 2 cut(s) 86, 99
AcuI CTGAAG 2 cut(s) 96, 107
AfiI CCNNNNNNNGG 1 cut(s) 362
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
AlwI GGATC 2 cut(s) 86, 99
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspLEI GCGC 1 cut(s) 347
BamHI GGATCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 33
BccI CCATC 1 cut(s) 313
BclI TGATCA 1 cut(s) 304
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 85, 157, 216
BseLI CCNNNNNNNGG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 362
Bsp143I GATC 3 cut(s) 91, 290, 304
Bsp19I CCATGG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 86, 99
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 91, 290, 304
BssT1I CCWWGG 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 72, 126
BstAPI GCANNNNNTGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 85, 157, 216
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 3 cut(s) 94, 293, 307
BstMBI GATC 3 cut(s) 91, 290, 304
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 85, 157, 216
BveI ACCTGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 347
CviAII CATG 3 cut(s) 13, 76, 270
CviJI RGCY 2 cut(s) 128, 302
CviKI_1 RGCY 2 cut(s) 128, 302
DdeI CTNAG 1 cut(s) 54
DpnI GATC 3 cut(s) 93, 292, 306
DpnII GATC 3 cut(s) 91, 290, 304
Eam1104I CTCTTC 2 cut(s) 72, 126
EarI CTCTTC 2 cut(s) 72, 126
Eco130I CCWWGG 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 96, 107
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 79, 273
FaiI YATR 4 cut(s) 14, 77, 174, 271
FatI CATG 3 cut(s) 12, 75, 269
FbaI TGATCA 1 cut(s) 304
FokI GGATG 3 cut(s) 92, 144, 203
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 228
HhaI GCGC 1 cut(s) 347
Hin1II CATG 3 cut(s) 16, 79, 273
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 340
HpyAV CCTTC 3 cut(s) 120, 176, 252
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 44, 140, 155, 186, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 16, 79, 273
HspAI GCGC 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 91, 290, 304
LpnPI CCDG 7 cut(s) 110, 165, 174, 192, 196, 235, 239
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 294
MalI GATC 3 cut(s) 93, 292, 306
MboI GATC 3 cut(s) 91, 290, 304
MboII GAAGA 5 cut(s) 38, 59, 113, 252, 327
MflI RGATCY 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 3 cut(s) 79, 82, 277
MseI TTAA 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 161
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 91, 290, 304
NlaIII CATG 3 cut(s) 16, 79, 273
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 294
PaqCI CACCTGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 91
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 3 cut(s) 91, 290, 304
SetI ASST 4 cut(s) 154, 235, 263, 304
SfaNI GCATC 1 cut(s) 341
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 235
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseFI GTSAC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 205
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.