Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

26108219 .. 26111509

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0148600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCCAACACCGGAGCCGAAAGGGAGCCTGAATGGATACAAAGAGTGAGATCAGAGGGAGCTGTTCCGCTTGTTGATGCAGACACAGGTCAAAATGGCTGGGCTTCTCCACCTGGACACAAGTTCATGGTCAGAGGCCCGGATTACTTGTCGACCAAGGTTAAAATTCCTGCTGATGCATGTCTTCTAAAGCCTCTTGGTTTCGATTGGATTAAAAGCTCTACAAAGATTACAGGGATCTTAAAACATCCTAACAGTCGTGTCAGGAAGGCTATTGAGGATGAGTTTCGGTCAGGTAATAAGCCTTTTGTTTGGGCTTTCAATCTTCAAGTTCCTAGCAAGGATAACTATAGTGCAGTGGCATATTTTACAACCACAGAGCCTATCCCTGAGGGGTCTTTGATGGATCAGTTTCTGAAAGGTGATGATGGCTTTAGGAATTCGAGGCTTAAGTTGATTGCCAACATTGTCAAGGGCCCTTGGATTGTAAGAAAAGCAGTTGGGGAGCAGGCCATATGCATAATTGGTCGTGCCCTTTCTTGTCGCTATAGTGTATCAGACACTTTCCTAGAAGTAGATGTAGATATTGGATCTTCCATGGTTGCAAGTGCAATAGTTCATCTTGCATTTGGTTATATCACAACATTGACTGTAGACCTTGCCTTTCTGATCGAGGCTCAAACTGAGTCAGAGCTTCCAGAACAGCTCTTAGGTGCTGTAAGATTCTCTGACCTAGACCCTGCTGTGGCTCGGCCCGCTGAGCCATCATCTGATAGGAGTCTTGGCACTTTGCAGTCTTCTCTGCCTACACGACTATGGAAATCACTTGGGCAGGGTTTCTCCCATATTCTTCATCCAGGTCCCCAAGAAAATGGCTCTAGCTCAGGCTCACCACATGCTAATGGAACTGGGGATAATAAAGAAGGCAGTTTTGAAGAGATTAACAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

317

Amino Acids

34.44

Weight (kDa)

5.92

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR2_C	PF07059	34 - 246	1.1e-78	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	152, 654
AciI	CCGC	2 cut(s)	68, 756
AclWI	GGATC	3 cut(s)	245, 414, 598
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	165, 439
AfiI	CCNNNNNNNGG	1 cut(s)	745
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	3 cut(s)	322, 329, 935
AjnI	CCWGG	2 cut(s)	112, 856
AluBI	AGCT	5 cut(s)	62, 219, 694, 706, 882
AluI	AGCT	5 cut(s)	62, 219, 694, 706, 882
AlwI	GGATC	3 cut(s)	245, 414, 598
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	5 cut(s)	3, 136, 475, 510, 752
ApaI	GGGCCC	1 cut(s)	479
ApoI	RAATTY	2 cut(s)	165, 439
AspS9I	GGNCC	5 cut(s)	137, 475, 476, 753, 860
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	434, 882
AvaII	GGWCC	1 cut(s)	860
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	2 cut(s)	479, 535
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	176, 789
BccI	CCATC	3 cut(s)	397, 422, 772
BciT130I	CCWGG	2 cut(s)	114, 858
BciVI	GTATCC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	140
BfaI	CTAG	4 cut(s)	336, 569, 734, 879
BfmI	CTRYAG	3 cut(s)	349, 547, 651
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	759
Bme1390I	CCNGG	3 cut(s)	114, 140, 858
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	5 cut(s)	137, 475, 476, 753, 860
BmiI	GGNNCC	4 cut(s)	16, 27, 477, 862
BmrFI	CCNGG	3 cut(s)	114, 140, 858
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	2 cut(s)	67, 166
BmuI	ACTGGG	1 cut(s)	918
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	2 cut(s)	176, 789
Bpu10I	CCTNAGC	1 cut(s)	883
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	156, 479, 597
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	745
Bse1I	ACTGG	1 cut(s)	913
Bse21I	CCTNAGG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	114, 858
BseDI	CCNNGG	3 cut(s)	156, 479, 597
BseGI	GGATG	3 cut(s)	247, 286, 853
BseLI	CCNNNNNNNGG	1 cut(s)	745
BseMII	CTCAG	4 cut(s)	381, 675, 750, 897
BseNI	ACTGG	1 cut(s)	913
BseSI	GKGCMC	2 cut(s)	479, 535
BseYI	CCCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	5 cut(s)	5, 138, 477, 512, 754
BsiSI	CCGG	2 cut(s)	12, 140
BslFI	GGGAC	1 cut(s)	846
BslI	CCNNNNNNNGG	1 cut(s)	745
BsmFI	GGGAC	1 cut(s)	846
BsnI	GGCC	5 cut(s)	5, 138, 477, 512, 754
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	479, 535
Bsp143I	GATC	5 cut(s)	50, 237, 406, 590, 669
Bsp1720I	GCTNAGC	1 cut(s)	759
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	2 cut(s)	68, 756
BspANI	GGCC	5 cut(s)	5, 138, 477, 512, 754
BspCNI	CTCAG	4 cut(s)	382, 676, 751, 896
BspLI	GGNNCC	4 cut(s)	16, 27, 477, 862
BspPI	GGATC	3 cut(s)	245, 414, 598
BspTI	CTTAAG	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	913
BssECI	CCNNGG	3 cut(s)	156, 479, 597
BssMI	GATC	5 cut(s)	50, 237, 406, 590, 669
BssT1I	CCWWGG	3 cut(s)	156, 479, 597
Bst2UI	CCWGG	2 cut(s)	114, 858
Bst4CI	ACNGT	2 cut(s)	257, 652
Bst6I	CTCTTC	1 cut(s)	930
BstAFI	CTTAAG	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	510, 756
BstDEI	CTNAG	5 cut(s)	390, 684, 709, 759, 883
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	247, 286, 853
BstKTI	GATC	5 cut(s)	53, 240, 409, 593, 672
BstMBI	GATC	5 cut(s)	50, 237, 406, 590, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	755, 760
BstNI	CCWGG	2 cut(s)	114, 858
BstNSI	RCATGY	2 cut(s)	183, 899
BstPAI	GACNNNNGTC	1 cut(s)	87
BstSCI	CCNGG	3 cut(s)	112, 138, 856
BstSFI	CTRYAG	3 cut(s)	349, 547, 651
BstSLI	GKGCMC	2 cut(s)	479, 535
BstV2I	GAAGAC	2 cut(s)	176, 789
BstX2I	RGATCY	2 cut(s)	237, 590
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	2 cut(s)	237, 590
Bsu36I	CCTNAGG	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	5 cut(s)	5, 138, 477, 512, 754
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	247, 286, 853
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	510, 756
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	5 cut(s)	137, 475, 476, 753, 860
CviAII	CATG	4 cut(s)	127, 180, 598, 896
DdeI	CTNAG	5 cut(s)	390, 684, 709, 759, 883
DpnI	GATC	5 cut(s)	52, 239, 408, 592, 671
DpnII	GATC	5 cut(s)	50, 237, 406, 590, 669
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco130I	CCWWGG	3 cut(s)	156, 479, 597
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	860
Eco81I	CCTNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	3 cut(s)	475, 476, 860
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	112, 856
EcoT14I	CCWWGG	3 cut(s)	156, 479, 597
EcoT22I	ATGCAT	2 cut(s)	181, 521
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	3 cut(s)	156, 479, 597
FaeI	CATG	4 cut(s)	130, 183, 601, 899
FaqI	GGGAC	1 cut(s)	846
FatI	CATG	4 cut(s)	126, 179, 597, 895
FauI	CCCGC	1 cut(s)	763
FauNDI	CATATG	1 cut(s)	515
FblI	GTMKAC	2 cut(s)	152, 654
FokI	GGATG	3 cut(s)	234, 293, 840
FriOI	GRGCYC	1 cut(s)	479
FspBI	CTAG	4 cut(s)	336, 569, 734, 879
GsaI	CCCAGC	1 cut(s)	103
HaeIII	GGCC	5 cut(s)	5, 138, 477, 512, 754
HapII	CCGG	2 cut(s)	12, 140
Hin1II	CATG	4 cut(s)	130, 183, 601, 899
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	3 cut(s)	686, 723, 778
HpaII	CCGG	2 cut(s)	12, 140
HphI	GGTGA	2 cut(s)	434, 882
Hpy166II	GTNNAC	2 cut(s)	153, 655
Hpy188I	TCNGA	8 cut(s)	55, 134, 417, 559, 669, 691, 730, 772
Hpy188III	TCNNGA	2 cut(s)	265, 698
Hpy8I	GTNNAC	2 cut(s)	153, 655
HpyAV	CCTTC	2 cut(s)	262, 917
HpyCH4III	ACNGT	2 cut(s)	257, 652
HpyCH4V	TGCA	8 cut(s)	80, 179, 356, 519, 605, 611, 626, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	755, 760
HpyF3I	CTNAG	5 cut(s)	390, 684, 709, 759, 883
Hsp92II	CATG	4 cut(s)	130, 183, 601, 899
Kzo9I	GATC	5 cut(s)	50, 237, 406, 590, 669
LmnI	GCTCC	4 cut(s)	14, 25, 59, 505
LweI	GCATC	2 cut(s)	67, 166
MaeI	CTAG	4 cut(s)	336, 569, 734, 879
MalI	GATC	5 cut(s)	52, 239, 408, 592, 671
MboI	GATC	5 cut(s)	50, 237, 406, 590, 669
MboII	GAAGA	6 cut(s)	176, 317, 585, 789, 842, 947
MflI	RGATCY	2 cut(s)	237, 590
MhlI	GDGCHC	2 cut(s)	479, 535
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	165, 439, 522
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	695, 787
MnlI	CCTC	7 cut(s)	49, 128, 204, 271, 385, 438, 667
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	181, 521
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	162, 213, 242, 450, 942
MslI	CAYNNNNRTG	2 cut(s)	814, 900
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	2 cut(s)	12, 140
MspR9I	CCNGG	3 cut(s)	114, 140, 858
MvaI	CCWGG	2 cut(s)	114, 858
MwoI	GCNNNNNNNGC	2 cut(s)	755, 760
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	5 cut(s)	50, 237, 406, 590, 669
NlaIII	CATG	4 cut(s)	130, 183, 601, 899
NlaIV	GGNNCC	4 cut(s)	16, 27, 477, 862
NmeAIII	GCCGAG	1 cut(s)	730
NsiI	ATGCAT	2 cut(s)	181, 521
NspI	RCATGY	2 cut(s)	183, 899
PfeI	GAWTC	1 cut(s)	723
PleI	GAGTC	2 cut(s)	694, 786
PpsI	GAGTC	2 cut(s)	694, 786
PpuMI	RGGWCCY	1 cut(s)	860
PshAI	GACNNNNGTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	112, 856
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	112, 856
PspN4I	GGNNCC	4 cut(s)	16, 27, 477, 862
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	5 cut(s)	137, 475, 476, 753, 860
PspPPI	RGGWCCY	1 cut(s)	860
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	237, 590
RseI	CAYNNNNRTG	2 cut(s)	814, 900
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	5 cut(s)	162, 213, 242, 450, 942
Sau3AI	GATC	5 cut(s)	50, 237, 406, 590, 669
Sau96I	GGNCC	5 cut(s)	137, 475, 476, 753, 860
SchI	GAGTC	2 cut(s)	695, 787
ScrFI	CCNGG	3 cut(s)	114, 140, 858
SduI	GDGCHC	2 cut(s)	479, 535
SfaNI	GCATC	2 cut(s)	67, 166
SfcI	CTRYAG	3 cut(s)	349, 547, 651
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	2 cut(s)	814, 900
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	165, 439, 522
SsiI	CCGC	2 cut(s)	68, 756
SspMI	CTAG	4 cut(s)	336, 569, 734, 879
StyD4I	CCNGG	3 cut(s)	112, 138, 856
StyI	CCWWGG	3 cut(s)	156, 479, 597
TaaI	ACNGT	2 cut(s)	257, 652
TaqI	TCGA	4 cut(s)	152, 204, 443, 672
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	165, 439, 522
TfiI	GAWTC	1 cut(s)	723
Tru1I	TTAA	5 cut(s)	162, 213, 242, 450, 942
Tru9I	TTAA	5 cut(s)	162, 213, 242, 450, 942
TscAI	CASTG	1 cut(s)	363
TspDTI	ATGAA	3 cut(s)	115, 608, 842
TspRI	CASTG	1 cut(s)	363
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	2 cut(s)	165, 439
XceI	RCATGY	2 cut(s)	183, 899
XmiI	GTMKAC	2 cut(s)	152, 654
XspI	CTAG	4 cut(s)	336, 569, 734, 879
Zsp2I	ATGCAT	2 cut(s)	181, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.