Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004142.1

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

41497 .. 44462

Gene Structure 2966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004142.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtggagtctactgtccagcagagccgatcgagggacctcgacaagctcctcctccgacccggaaatctcgtcggacccaacttcgaacccggcccagggctcagagaagacctcaaggagtacgtcagagtgttggtggtaggcgctggcggattgggctgtgaattgctcaaggacttggctctgtccggctttcgcgaaatcgaagtcatcgacatggatcgcattgaggtctctaacctcaatcggcagtttctcttcaggcttgaagatgtgggcaagccgaaggctgaggttgctgcaagacgagtaatgcaaagagttgccggggttaacattgttccgcacttctgccggattgaggacaaagagcttgacttttacagcaatttcagcatcattgctctcggtctcgattcgattgaagctcggagctatataaactctgttgcttgtagctttcttgagtacgatgctgatgataaaccccaagaagaaactgtcaaacctatggtagatggtgggactgaaggttttcaaggacatgccaggttcattgagctacttgaagaacaccctaaattactgttgtcaaaagcaagcattgcacatagagggaagaatttgtacatgcaagcgccacctgtactggaagagatgaccagatcaaacttaagcaagtctctctatgatctaatgggtaaaattcccaaagatgttgtccatgcgactggtactaccaacaagaatgacaaaaagacttcagttctgaggaagttacgagttgtcttcaagggagttgatgagattacagatatggagactgcagcaggtggggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

281

Amino Acids

31.26

Weight (kDa)

5.69

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	201
AciI	CCGC	2 cut(s)	153, 347
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	625, 708
AcuI	CTGAAG	3 cut(s)	247, 552, 750
AfaI	GTAC	5 cut(s)	125, 473, 632, 651, 739
AfiI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
AflII	CTTAAG	1 cut(s)	676
AgsI	TTSAA	5 cut(s)	272, 428, 542, 572, 796
AjnI	CCWGG	2 cut(s)	97, 551
AluBI	AGCT	6 cut(s)	49, 376, 431, 438, 462, 565
AluI	AGCT	6 cut(s)	49, 376, 431, 438, 462, 565
Alw26I	GTCTC	4 cut(s)	241, 419, 690, 818
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	302, 830
ApoI	RAATTY	2 cut(s)	625, 708
ArsI	GACNNNNNNTTYG	4 cut(s)	195, 227, 708, 740
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	149, 643
AspS9I	GGNCC	3 cut(s)	37, 77, 95
AsuC2I	CCSGG	3 cut(s)	63, 93, 331
AsuII	TTCGAA	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	37, 77
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BbsI	GAAGAC	2 cut(s)	117, 784
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	289, 842
BccI	CCATC	1 cut(s)	515
BciT130I	CCWGG	2 cut(s)	99, 553
BcnI	CCSGG	3 cut(s)	63, 93, 331
BcoDI	GTCTC	4 cut(s)	241, 419, 690, 818
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	2 cut(s)	150, 644
BfrI	CTTAAG	1 cut(s)	676
BfuAI	ACCTGC	1 cut(s)	824
BisI	GCNGC	2 cut(s)	303, 831
BlsI	GCNGC	2 cut(s)	304, 832
Bme1390I	CCNGG	5 cut(s)	63, 93, 99, 331, 553
Bme18I	GGWCC	2 cut(s)	37, 77
BmgT120I	GGNCC	3 cut(s)	37, 77, 95
BmiI	GGNNCC	2 cut(s)	38, 79
BmrFI	CCNGG	5 cut(s)	63, 93, 99, 331, 553
BmsI	GCATC	2 cut(s)	408, 466
BpiI	GAAGAC	2 cut(s)	117, 784
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	3 cut(s)	101, 158, 488
BpuMI	CCSGG	3 cut(s)	63, 93, 331
BsaI	GGTCTC	2 cut(s)	241, 419
BsaJI	CCNNGG	3 cut(s)	97, 98, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
Bse1I	ACTGG	2 cut(s)	657, 739
Bse3DI	GCAATG	2 cut(s)	402, 606
BseBI	CCWGG	2 cut(s)	99, 553
BseDI	CCNNGG	3 cut(s)	97, 98, 330
BseLI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
BseMI	GCAATG	2 cut(s)	402, 606
BseMII	CTCAG	3 cut(s)	118, 285, 764
BseNI	ACTGG	2 cut(s)	657, 739
BseRI	GAGGAG	2 cut(s)	41, 44
BseXI	GCAGC	2 cut(s)	289, 842
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	63, 93, 192, 330, 358
BslFI	GGGAC	2 cut(s)	50, 541
BslI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
BsmAI	GTCTC	4 cut(s)	241, 419, 690, 818
BsmFI	GGGAC	2 cut(s)	50, 541
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	2 cut(s)	241, 419
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	4 cut(s)	29, 223, 668, 694
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	2 cut(s)	153, 347
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	3 cut(s)	117, 286, 765
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	38, 79
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	87
BspTI	CTTAAG	1 cut(s)	676
BspTNI	GGTCTC	2 cut(s)	241, 419
BsrDI	GCAATG	2 cut(s)	402, 606
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	657, 739
BssECI	CCNNGG	3 cut(s)	97, 98, 330
BssMI	GATC	4 cut(s)	29, 223, 668, 694
Bst2UI	CCWGG	2 cut(s)	99, 553
Bst4CI	ACNGT	3 cut(s)	16, 505, 591
Bst6I	CTCTTC	2 cut(s)	266, 651
BstAFI	CTTAAG	1 cut(s)	676
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	4 cut(s)	151, 284, 604, 639
BstDEI	CTNAG	3 cut(s)	104, 294, 773
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	2 cut(s)	150, 644
BstHHI	GCGC	2 cut(s)	149, 643
BstKTI	GATC	4 cut(s)	32, 226, 671, 697
BstMAI	GTCTC	4 cut(s)	241, 419, 690, 818
BstMBI	GATC	4 cut(s)	29, 223, 668, 694
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	5 cut(s)	159, 299, 396, 608, 839
BstNI	CCWGG	2 cut(s)	99, 553
BstNSI	RCATGY	2 cut(s)	551, 637
BstSCI	CCNGG	5 cut(s)	61, 91, 97, 329, 551
BstSFI	CTRYAG	1 cut(s)	828
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	289, 842
BstV2I	GAAGAC	2 cut(s)	117, 784
BstXI	CCANNNNNNTGG	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	96
BtuMI	TCGCGA	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	4 cut(s)	151, 284, 604, 639
CfoI	GCGC	2 cut(s)	149, 643
Cfr13I	GGNCC	3 cut(s)	37, 77, 95
Csp6I	GTAC	5 cut(s)	124, 472, 631, 650, 738
CviAII	CATG	5 cut(s)	220, 548, 634, 728, 843
CviQI	GTAC	5 cut(s)	124, 472, 631, 650, 738
DdeI	CTNAG	3 cut(s)	104, 294, 773
DpnI	GATC	4 cut(s)	31, 225, 670, 696
DpnII	GATC	4 cut(s)	29, 223, 668, 694
Eam1104I	CTCTTC	2 cut(s)	266, 651
EarI	CTCTTC	2 cut(s)	266, 651
EciI	GGCGGA	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	241, 419
Eco47I	GGWCC	2 cut(s)	37, 77
Eco57I	CTGAAG	3 cut(s)	247, 552, 750
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	97, 551
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	5 cut(s)	223, 551, 637, 731, 846
FaqI	GGGAC	2 cut(s)	50, 541
FatI	CATG	5 cut(s)	219, 547, 633, 727, 842
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	303, 831
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	303, 831
GlaI	GCGC	2 cut(s)	148, 642
GluI	GCNGC	2 cut(s)	303, 831
HaeII	RGCGCY	2 cut(s)	150, 644
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	5 cut(s)	63, 93, 192, 330, 358
HhaI	GCGC	2 cut(s)	149, 643
Hin1II	CATG	5 cut(s)	223, 551, 637, 731, 846
Hin6I	GCGC	2 cut(s)	147, 641
HinP1I	GCGC	2 cut(s)	147, 641
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	8, 419
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	5 cut(s)	63, 93, 192, 330, 358
Hpy166II	GTNNAC	2 cut(s)	12, 337
Hpy188I	TCNGA	6 cut(s)	59, 77, 107, 131, 435, 774
Hpy188III	TCNNGA	3 cut(s)	200, 416, 467
Hpy8I	GTNNAC	2 cut(s)	12, 337
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	283, 527
HpyCH4III	ACNGT	3 cut(s)	16, 505, 591
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	305, 319, 611, 637, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	159, 299, 396, 608, 839
HpyF3I	CTNAG	3 cut(s)	104, 294, 773
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	223, 551, 637, 731, 846
HspAI	GCGC	2 cut(s)	147, 641
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	29, 223, 668, 694
LmnI	GCTCC	2 cut(s)	54, 435
Lsp1109I	GCAGC	2 cut(s)	289, 842
LweI	GCATC	2 cut(s)	408, 466
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	780
MalI	GATC	4 cut(s)	31, 225, 670, 696
MboI	GATC	4 cut(s)	29, 223, 668, 694
MboII	GAAGA	8 cut(s)	122, 253, 284, 509, 584, 634, 668, 784
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	167, 391, 584, 625, 708
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	55, 82
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	336, 677
MslI	CAYNNNNRTG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	676
MspI	CCGG	5 cut(s)	63, 93, 192, 330, 358
MspR9I	CCNGG	5 cut(s)	63, 93, 99, 331, 553
MvaI	CCWGG	2 cut(s)	99, 553
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	5 cut(s)	159, 299, 396, 608, 839
NciI	CCSGG	3 cut(s)	63, 93, 331
NdeII	GATC	4 cut(s)	29, 223, 668, 694
NlaIII	CATG	5 cut(s)	223, 551, 637, 731, 846
NlaIV	GGNNCC	2 cut(s)	38, 79
NruI	TCGCGA	1 cut(s)	201
NspI	RCATGY	2 cut(s)	551, 637
NspV	TTCGAA	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	824
PasI	CCCWGGG	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	304, 832
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	97, 551
PspGI	CCWGG	2 cut(s)	97, 551
PspN4I	GGNNCC	2 cut(s)	38, 79
PspPI	GGNCC	3 cut(s)	37, 77, 95
PspPPI	RGGWCCY	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	832
PvuI	CGATCG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	5 cut(s)	125, 473, 632, 651, 739
RsaNI	GTAC	5 cut(s)	124, 472, 631, 650, 738
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	336, 677
SatI	GCNGC	2 cut(s)	303, 831
Sau3AI	GATC	4 cut(s)	29, 223, 668, 694
Sau96I	GGNCC	3 cut(s)	37, 77, 95
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	5 cut(s)	63, 93, 99, 331, 553
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	408, 466
SfcI	CTRYAG	1 cut(s)	828
SfuI	TTCGAA	1 cut(s)	87
SinI	GGWCC	2 cut(s)	37, 77
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	4 cut(s)	116, 173, 467, 676
SmoI	CTYRAG	4 cut(s)	116, 173, 467, 676
Sse9I	AATT	5 cut(s)	167, 391, 584, 625, 708
SsiI	CCGC	2 cut(s)	153, 347
StyD4I	CCNGG	5 cut(s)	61, 91, 97, 329, 551
TaaI	ACNGT	3 cut(s)	16, 505, 591
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	7 cut(s)	32, 42, 87, 207, 216, 417, 422
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	5 cut(s)	167, 391, 584, 625, 708
TatI	WGTACW	2 cut(s)	630, 649
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	336, 677
Tru9I	TTAA	2 cut(s)	336, 677
TseI	GCWGC	2 cut(s)	302, 830
TspDTI	ATGAA	1 cut(s)	547
Vha464I	CTTAAG	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	37, 77
XapI	RAATTY	2 cut(s)	625, 708
XceI	RCATGY	2 cut(s)	551, 637
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.