Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

82465506 .. 82560810

Gene Structure 95305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG535100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGCATCTCTCAAGTCTCTATCGAAACTGCGGCCAACGACCACAGGGCATCCACGACCGATTATCGGACCCTAATCTCAAATTCAGCAGCAGATCAAGAAGAAGAAGAAATTGGGGCCGATTTTCCAGAAGGCTTGAAGTTGAAATCGAAGTTGATCGACGCGGTTGCAAAGTTTGGTGCCTTGGTGGGAAATATGGATTGTTTCATTCACTACGGCCTCAGATTCTTCTGCTCAAGGTATAATGGTGCAGAAGGCCTCCACACGAAAGTGACCGAGTTTGTCAGGGACAAAGACTGTGTTGTATGTGGCCCAGGTGTGCTTATTGAGCTGGACACCTCAGTTACTTTGCAAAAGATTTATTGGGCTCCATGGTCAAAGTATGCATGCAATCCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

133

Amino Acids

14.67

Weight (kDa)

5.11

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	32, 164
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	139, 145
AjnI	CCWGG	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	5 cut(s)	33, 117, 217, 256, 310
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	69, 117, 311
AvaII	GGWCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	33, 90
BlsI	GCNGC	2 cut(s)	34, 91
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	69, 117, 311
BmiI	GGNNCC	4 cut(s)	71, 118, 181, 369
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	15, 59
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	183, 313, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	183, 313, 371
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	235, 354
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	5 cut(s)	35, 119, 219, 258, 312
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	5 cut(s)	35, 119, 219, 258, 312
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	94, 156
Bsp19I	CCATGG	1 cut(s)	371
BspACI	CCGC	2 cut(s)	32, 164
BspANI	GGCC	5 cut(s)	35, 119, 219, 258, 312
BspCNI	CTCAG	2 cut(s)	234, 353
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	4 cut(s)	71, 118, 181, 369
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	3 cut(s)	183, 313, 371
BssMI	GATC	2 cut(s)	94, 156
BssT1I	CCWWGG	2 cut(s)	183, 371
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	221, 340
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	97, 159
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	94, 156
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	101
BsuRI	GGCC	5 cut(s)	35, 119, 219, 258, 312
BtgI	CCRYGG	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	69, 117, 311
CseI	GACGC	1 cut(s)	170
CviAII	CATG	2 cut(s)	372, 387
CviJI	RGCY	8 cut(s)	35, 119, 135, 219, 258, 312, 331, 368
CviKI_1	RGCY	8 cut(s)	35, 119, 135, 219, 258, 312, 331, 368
DdeI	CTNAG	2 cut(s)	221, 340
DpnI	GATC	2 cut(s)	96, 158
DpnII	GATC	2 cut(s)	94, 156
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	183, 371
Eco147I	AGGCCT	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	183, 371
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	2 cut(s)	183, 371
FaeI	CATG	2 cut(s)	375, 390
FaiI	YATR	7 cut(s)	197, 243, 307, 373, 384, 388, 400
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	371, 386
Fnu4HI	GCNGC	2 cut(s)	33, 90
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	33, 90
GluI	GCNGC	2 cut(s)	33, 90
HaeIII	GGCC	5 cut(s)	35, 119, 219, 258, 312
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	375, 390
HinfI	GANTC	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	69, 224
Hpy188III	TCNNGA	2 cut(s)	98, 128
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	125, 248
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	170, 251, 352, 386, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	221, 340
Hsp92II	CATG	2 cut(s)	375, 390
Kzo9I	GATC	2 cut(s)	94, 156
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	6 cut(s)	31, 141, 271, 300, 317, 327
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	15, 59
MaeIII	GTNAC	2 cut(s)	271, 343
MalI	GATC	2 cut(s)	96, 158
MboI	GATC	2 cut(s)	94, 156
MboII	GAAGA	4 cut(s)	113, 116, 119, 220
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	2 cut(s)	82, 111
MnlI	CCTC	3 cut(s)	230, 269, 349
Mph1103I	ATGCAT	1 cut(s)	388
MslI	CAYNNNNRTG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	371
NdeII	GATC	2 cut(s)	94, 156
NlaIII	CATG	2 cut(s)	375, 390
NlaIV	GGNNCC	4 cut(s)	71, 118, 181, 369
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	1 cut(s)	390
OliI	CACNNNNGTG	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	34, 91
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	4 cut(s)	71, 118, 181, 369
PspPI	GGNCC	3 cut(s)	69, 117, 311
RseI	CAYNNNNRTG	1 cut(s)	269
SatI	GCNGC	2 cut(s)	33, 90
Sau3AI	GATC	2 cut(s)	94, 156
Sau96I	GGNCC	3 cut(s)	69, 117, 311
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	4 cut(s)	242, 319, 333, 341
SfaNI	GCATC	2 cut(s)	15, 59
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	12, 235
SmoI	CTYRAG	2 cut(s)	12, 235
SphI	GCATGC	1 cut(s)	390
Sse9I	AATT	2 cut(s)	82, 111
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	32, 164
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	183, 371
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	24, 149, 159
TaqII	GACCGA	2 cut(s)	74, 290
TasI	AATT	2 cut(s)	82, 111
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.