Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

50446907 .. 50451534

Gene Structure 4628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG211600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTGGAGTCTACGGTCCAGCAGAGCCGATCGAGGGACCTCGACAAGCTCCTCCTCCGACCCGGAAATCTCGTCGGACCCAACTTCGAACCCGGCCCAGGGCTCAGAGAAGACCTCAAGGAGTACGTCAGAGTGCTGGTGGTAGGCGCTGGCGGGTTGGGCTGTGAATTGCTCAAGGACTTGGCTCTGTCCGGCTTTCGCGAAATCGAAGTCATCGACATGGATCGCATTGAGGTCTCTAACCTCAATCGACAGTTTCTCTTCAGGCTTGAAGATGTGGGCAAGCCGAAGGCTGAGGTTGCTGCAAAACGAGTAATGCAAAGAGTTGCTGGGGTTAACATCGTTCCACACTTCTGCCGGATTGAGGACAAAGAGCTTGACTTTTACAGCAATTTCAGCATCATTGCTCTCGGTCTCGATTCGATTGAAGCTCGGAGCTATATAAATTCTGTTGCTTGTAGCTTTCTTGAGTACGATGCTGATGATAAACCCCAAGAAGAAACTGTCAAACCTATGGTAGATGGTGGGACTGAAGGTTTTCAAGGACATGCCAGGGTCATTATGCCAGGGATGACTCCATGCTTTGAGTGTACAATCTGGCTTTTCCCTCCTCAAGTGAAGTTCCCTTTATGCACACTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGGATGAGGTACATAGTGGAGAGGCTTTTGATCCAGATGATCCTGAACATATGAAGTGGGTGTACGATGAGGCTAACAAAAGAGCTGAGCTGTTTGGTATTCCAGGAGTTACATTGTCTCTCACTCAGGGCGTTGTGAAAAACATCATACCGGCTATTGCATCCACAAATGCGATTATATCAGCTGCCTGTGCACTAGAAACATTGAAGATTGCATCTGGATGCAGTAAAACTCTATCAAATTATCTAACGTGCGTTCCTCTGTCTCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

322

Amino Acids

35.6

Weight (kDa)

5.07

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	35 - 314	1.9e-57	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	201
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	3 cut(s)	231, 719, 728
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	2 cut(s)	247, 552
AfaI	GTAC	5 cut(s)	125, 473, 592, 705, 758
AfiI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
AgsI	TTSAA	5 cut(s)	272, 428, 542, 674, 901
AjnI	CCWGG	4 cut(s)	97, 551, 565, 796
AluBI	AGCT	8 cut(s)	49, 376, 431, 438, 462, 779, 784, 878
AluI	AGCT	8 cut(s)	49, 376, 431, 438, 462, 779, 784, 878
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	4 cut(s)	241, 419, 816, 963
Alw44I	GTGCAC	1 cut(s)	885
AlwI	GGATC	3 cut(s)	231, 719, 728
AoxI	GGCC	1 cut(s)	94
ApaLI	GTGCAC	1 cut(s)	885
ApeKI	GCWGC	3 cut(s)	302, 659, 878
ApoI	RAATTY	1 cut(s)	445
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	4 cut(s)	16, 37, 77, 95
AsuC2I	CCSGG	2 cut(s)	63, 93
AsuHPI	GGTGA	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	87
AvaII	GGWCC	3 cut(s)	16, 37, 77
BaeGI	GKGCMC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	889
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	289, 646, 865
BccI	CCATC	1 cut(s)	515
BciT130I	CCWGG	4 cut(s)	99, 553, 567, 798
BcnI	CCSGG	2 cut(s)	63, 93
BcoDI	GTCTC	4 cut(s)	241, 419, 816, 963
BfaI	CTAG	2 cut(s)	651, 890
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	3 cut(s)	303, 660, 879
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	3 cut(s)	304, 661, 880
Bme1390I	CCNGG	6 cut(s)	63, 93, 99, 553, 567, 798
Bme18I	GGWCC	3 cut(s)	16, 37, 77
BmgT120I	GGNCC	4 cut(s)	16, 37, 77, 95
BmiI	GGNNCC	2 cut(s)	38, 79
BmrFI	CCNGG	6 cut(s)	63, 93, 99, 553, 567, 798
BmsI	GCATC	5 cut(s)	408, 466, 863, 905, 917
BpiI	GAAGAC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	4 cut(s)	101, 158, 488, 597
BpuMI	CCSGG	2 cut(s)	63, 93
BsaI	GGTCTC	2 cut(s)	241, 419
BsaJI	CCNNGG	4 cut(s)	97, 98, 552, 566
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
Bse118I	RCCGGY	1 cut(s)	844
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	4 cut(s)	99, 553, 567, 798
BseDI	CCNNGG	4 cut(s)	97, 98, 552, 566
BseGI	GGATG	4 cut(s)	576, 703, 854, 920
BseLI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	4 cut(s)	118, 285, 771, 833
BseRI	GAGGAG	3 cut(s)	41, 44, 600
BseSI	GKGCMC	1 cut(s)	889
BseXI	GCAGC	3 cut(s)	289, 646, 865
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	5 cut(s)	63, 93, 192, 358, 845
BslFI	GGGAC	2 cut(s)	50, 541
BslI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
BsmAI	GTCTC	4 cut(s)	241, 419, 816, 963
BsmFI	GGGAC	2 cut(s)	50, 541
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	2 cut(s)	241, 419
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	105, 889
Bsp1407I	TGTACA	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	29, 223, 724, 733
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	4 cut(s)	117, 286, 772, 832
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	38, 79
BspPI	GGATC	3 cut(s)	231, 719, 728
BspT104I	TTCGAA	1 cut(s)	87
BspTNI	GGTCTC	2 cut(s)	241, 419
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	844
BsrGI	TGTACA	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	844
BssECI	CCNNGG	4 cut(s)	97, 98, 552, 566
BssMI	GATC	4 cut(s)	29, 223, 724, 733
Bst2UI	CCWGG	4 cut(s)	99, 553, 567, 798
Bst4CI	ACNGT	3 cut(s)	16, 255, 505
Bst6I	CTCTTC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	590
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	151, 284
BstDEI	CTNAG	4 cut(s)	104, 294, 780, 819
BstF5I	GGATG	4 cut(s)	576, 703, 854, 920
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	32, 226, 727, 736
BstMAI	GTCTC	4 cut(s)	241, 419, 816, 963
BstMBI	GATC	4 cut(s)	29, 223, 724, 733
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 299, 396, 884
BstNI	CCWGG	4 cut(s)	99, 553, 567, 798
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	6 cut(s)	61, 91, 97, 551, 565, 796
BstSLI	GKGCMC	1 cut(s)	889
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	289, 646, 865
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	4 cut(s)	576, 703, 854, 920
BtuMI	TCGCGA	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	151, 284
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	844
Cfr13I	GGNCC	4 cut(s)	16, 37, 77, 95
Csp6I	GTAC	5 cut(s)	124, 472, 591, 704, 757
CviAII	CATG	3 cut(s)	220, 548, 579
CviQI	GTAC	5 cut(s)	124, 472, 591, 704, 757
DdeI	CTNAG	4 cut(s)	104, 294, 780, 819
DpnI	GATC	4 cut(s)	31, 225, 726, 735
DpnII	GATC	4 cut(s)	29, 223, 724, 733
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	241, 419
Eco47I	GGWCC	3 cut(s)	16, 37, 77
Eco57I	CTGAAG	2 cut(s)	247, 552
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	4 cut(s)	97, 551, 565, 796
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	223, 551, 582
FaqI	GGGAC	2 cut(s)	50, 541
FatI	CATG	3 cut(s)	219, 547, 578
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	744
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	303, 660, 879
FokI	GGATG	4 cut(s)	583, 710, 841, 927
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	303, 660, 879
FspBI	CTAG	2 cut(s)	651, 890
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	303, 660, 879
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	5 cut(s)	63, 93, 192, 358, 845
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	223, 551, 582
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	3 cut(s)	8, 419, 574
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	5 cut(s)	63, 93, 192, 358, 845
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	5 cut(s)	12, 337, 591, 757, 887
Hpy188I	TCNGA	5 cut(s)	59, 77, 107, 131, 435
Hpy188III	TCNNGA	6 cut(s)	200, 416, 467, 728, 737, 912
Hpy8I	GTNNAC	5 cut(s)	12, 337, 591, 757, 887
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	283, 527
HpyCH4III	ACNGT	3 cut(s)	16, 255, 505
HpyCH4IV	ACGT	2 cut(s)	126, 944
HpyCH4V	TGCA	8 cut(s)	305, 319, 633, 641, 854, 887, 908, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 299, 396, 884
HpyF3I	CTNAG	4 cut(s)	104, 294, 780, 819
HpySE526I	ACGT	2 cut(s)	126, 944
Hsp92II	CATG	3 cut(s)	223, 551, 582
HspAI	GCGC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	29, 223, 724, 733
LmnI	GCTCC	2 cut(s)	54, 435
Lsp1109I	GCAGC	3 cut(s)	289, 646, 865
LweI	GCATC	5 cut(s)	408, 466, 863, 905, 917
MaeI	CTAG	2 cut(s)	651, 890
MaeII	ACGT	2 cut(s)	126, 944
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	4 cut(s)	31, 225, 726, 735
MboI	GATC	4 cut(s)	29, 223, 724, 733
MboII	GAAGA	5 cut(s)	122, 253, 284, 509, 913
MhlI	GDGCHC	2 cut(s)	105, 889
MluCI	AATT	5 cut(s)	167, 391, 445, 687, 934
MlyI	GAGTC	2 cut(s)	17, 568
MmeI	TCCRAC	2 cut(s)	55, 82
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	336, 690
MslI	CAYNNNNRTG	2 cut(s)	218, 913
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	5 cut(s)	63, 93, 192, 358, 845
MspR9I	CCNGG	6 cut(s)	63, 93, 99, 553, 567, 798
MvaI	CCWGG	4 cut(s)	99, 553, 567, 798
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	159, 299, 396, 884
NciI	CCSGG	2 cut(s)	63, 93
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	4 cut(s)	29, 223, 724, 733
NlaIII	CATG	3 cut(s)	223, 551, 582
NlaIV	GGNNCC	2 cut(s)	38, 79
NruI	TCGCGA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	551
NspV	TTCGAA	1 cut(s)	87
PasI	CCCWGGG	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	796
PkrI	GCNGC	3 cut(s)	304, 661, 880
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	2 cut(s)	16, 568
PpsI	GAGTC	2 cut(s)	16, 568
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	4 cut(s)	97, 551, 565, 796
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	4 cut(s)	97, 551, 565, 796
PspN4I	GGNNCC	2 cut(s)	38, 79
PspPI	GGNCC	4 cut(s)	16, 37, 77, 95
PspPPI	RGGWCCY	1 cut(s)	37
PvuI	CGATCG	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	878
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	5 cut(s)	125, 473, 592, 705, 758
RsaNI	GTAC	5 cut(s)	124, 472, 591, 704, 757
RseI	CAYNNNNRTG	2 cut(s)	218, 913
SaqAI	TTAA	2 cut(s)	336, 690
SatI	GCNGC	3 cut(s)	303, 660, 879
Sau3AI	GATC	4 cut(s)	29, 223, 724, 733
Sau96I	GGNCC	4 cut(s)	16, 37, 77, 95
SchI	GAGTC	2 cut(s)	17, 568
ScrFI	CCNGG	6 cut(s)	63, 93, 99, 553, 567, 798
SduI	GDGCHC	2 cut(s)	105, 889
SfaNI	GCATC	5 cut(s)	408, 466, 863, 905, 917
SfuI	TTCGAA	1 cut(s)	87
SinI	GGWCC	3 cut(s)	16, 37, 77
SmiMI	CAYNNNNRTG	2 cut(s)	218, 913
SmlI	CTYRAG	4 cut(s)	116, 173, 467, 612
SmoI	CTYRAG	4 cut(s)	116, 173, 467, 612
Sse9I	AATT	5 cut(s)	167, 391, 445, 687, 934
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	2 cut(s)	651, 890
StyD4I	CCNGG	6 cut(s)	61, 91, 97, 551, 565, 796
TaaI	ACNGT	3 cut(s)	16, 255, 505
TaiI	ACGT	2 cut(s)	129, 947
TaqI	TCGA	8 cut(s)	32, 42, 87, 207, 216, 250, 417, 422
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	5 cut(s)	167, 391, 445, 687, 934
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	336, 690
Tru9I	TTAA	2 cut(s)	336, 690
TseI	GCWGC	3 cut(s)	302, 659, 878
TspDTI	ATGAA	1 cut(s)	761
VneI	GTGCAC	1 cut(s)	885
VpaK11BI	GGWCC	3 cut(s)	16, 37, 77
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	651, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.