Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004142.1

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

8965 .. 11267

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004142.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggtctctgatcacacccccggcaccaatcttgccaaaagaggagcacctagtaccgtccacgttcaacttcgggttgagcccgttaagactgcccataacccgcccgtgatcgcactgttggcaggcctactaggcgctgtcgggttgggctgtgaattgctcaaagacttggctttgtccggctttcgcgaaatcgaagtcatcgacatggatggcattgaggtctctaacctcaatcggcagtttctcttcaggcttgaagatgtgggcaagccgaaggctgaggttgctgcaagacgaattgaggacaaagtgcttgacttttacagcaatttctgcatcattgctcttggtctcatatcgattgaagctaggagctatataaactctgttgcttgtagcgttcttgagtatgatgctgatgataaaccccaagaagaaactgtcaaacctatggtagatggtgggactgaagattttcaaggacatgccagggatcactccatgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

171

Amino Acids

18.64

Weight (kDa)

4.97

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	238, 495
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	4 cut(s)	68, 263, 371, 485
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	2 cut(s)	374, 381
AluI	AGCT	2 cut(s)	374, 381
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	3 cut(s)	10, 232, 362
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	209, 458
BciT130I	CCWGG	1 cut(s)	496
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	10, 232, 362
BfaI	CTAG	3 cut(s)	51, 134, 375
BfoI	RGCGCY	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	21, 496
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	21, 496
BmsI	GCATC	2 cut(s)	351, 409
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	365
BsaI	GGTCTC	3 cut(s)	10, 232, 362
BsaJI	CCNNGG	2 cut(s)	19, 495
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	496
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	19, 495
BseGI	GGATG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	21, 183
BslFI	GGGAC	1 cut(s)	484
BsmAI	GTCTC	3 cut(s)	10, 232, 362
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	3 cut(s)	10, 232, 362
Bsp1286I	GDGCHC	2 cut(s)	49, 84
Bsp143I	GATC	3 cut(s)	10, 111, 499
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	3 cut(s)	10, 232, 362
BsrDI	GCAATG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	19, 495
BssMI	GATC	3 cut(s)	10, 111, 499
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	3 cut(s)	58, 120, 448
Bst6I	CTCTTC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	127, 275
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	13, 114, 502
BstMAI	GTCTC	3 cut(s)	10, 232, 362
BstMBI	GATC	3 cut(s)	10, 111, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 135, 290, 339
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	19, 494
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	116
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	127, 275
CfoI	GCGC	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	3 cut(s)	211, 491, 508
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	12, 113, 501
DpnII	GATC	3 cut(s)	10, 111, 499
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	3 cut(s)	10, 232, 362
Eco57I	CTGAAG	2 cut(s)	238, 495
EcoRII	CCWGG	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	3 cut(s)	214, 494, 511
FaiI	YATR	9 cut(s)	99, 212, 362, 384, 386, 417, 458, 492, 509
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	210, 490, 507
FauI	CCCGC	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	3 cut(s)	51, 134, 375
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	2 cut(s)	21, 183
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	214, 494, 511
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HpaII	CCGG	2 cut(s)	21, 183
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	191, 410
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	58, 120, 448
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	296, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 135, 290, 339
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	214, 494, 511
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 111, 499
LmnI	GCTCC	2 cut(s)	44, 378
LpnPI	CCDG	6 cut(s)	34, 111, 196, 241, 481, 508
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	351, 409
MaeI	CTAG	3 cut(s)	51, 134, 375
MaeII	ACGT	1 cut(s)	63
MalI	GATC	3 cut(s)	12, 113, 501
MboI	GATC	3 cut(s)	10, 111, 499
MboII	GAAGA	4 cut(s)	244, 275, 452, 488
MhlI	GDGCHC	2 cut(s)	49, 84
MluCI	AATT	3 cut(s)	158, 303, 334
MnlI	CCTC	5 cut(s)	35, 217, 245, 280, 301
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	2 cut(s)	21, 183
MspR9I	CCNGG	2 cut(s)	21, 496
MvaI	CCWGG	1 cut(s)	496
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	122, 135, 290, 339
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	3 cut(s)	10, 111, 499
NlaIII	CATG	3 cut(s)	214, 494, 511
NlaIV	GGNNCC	1 cut(s)	25
NruI	TCGCGA	1 cut(s)	192
NspI	RCATGY	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	25
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	10, 111, 499
ScrFI	CCNGG	2 cut(s)	21, 496
SduI	GDGCHC	2 cut(s)	49, 84
SetI	ASST	8 cut(s)	52, 66, 228, 237, 291, 376, 383, 457
SfaNI	GCATC	2 cut(s)	351, 409
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	158, 303, 334
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	51, 134, 375
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	19, 494
TaaI	ACNGT	3 cut(s)	58, 120, 448
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	198, 207, 365
TasI	AATT	3 cut(s)	158, 303, 334
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	293
TspRI	CASTG	1 cut(s)	123
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	3 cut(s)	51, 134, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.