Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

66504830 .. 66506674

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTAACGACGCCGGACGGAACAAATGGCCGGACGGCGAGGAACCCGATCCGGAGAACGACGAACAAGTTGATCTCCGGTGCCCAAAGAAAAACTTTGGGTGCGAACGAGGAAGACGAAGGCGGTCGGTTCGGAGACGAAGCCGGTCCGAGCGAAGGAGGTGGGCGGTCCGATGACGTGGAAGTCCAAGAAGAAGACGATCGGTCGTTCTTAGACGGATGTCGATGCAAGAAAGATAATGACGTGCTGAGAAGGCTAGGAGTGAAGGGTGTGGAGATAAAGAAACCAGAGCAGCTCAAAACCATGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCTAAGCTCGCCGAGTACCACAACCTGGTCTTTCTATCACTCACCCAAACAGTCTCTATTATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

137

Amino Acids

14.88

Weight (kDa)

5.52

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	81 - 124	1.3e-08	SNO glutamine amidotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	2 cut(s)	123, 166
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	155, 370
AhdI	GACNNNNNGTC	1 cut(s)	202
AjiI	CACGTC	2 cut(s)	178, 244
AjnI	CCWGG	2 cut(s)	322, 369
AluBI	AGCT	2 cut(s)	295, 352
AluI	AGCT	2 cut(s)	295, 352
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	129, 403
AlwI	GGATC	1 cut(s)	43
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	2 cut(s)	28, 306
ApeKI	GCWGC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	146, 168
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	146, 168
BaeGI	GKGCMC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	120, 201
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	324, 371
BcoDI	GTCTC	2 cut(s)	129, 403
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	1 cut(s)	293
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	324, 371
Bme18I	GGWCC	2 cut(s)	146, 168
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmgBI	CACGTC	2 cut(s)	178, 244
BmgT120I	GGNCC	2 cut(s)	146, 168
BmiI	GGNNCC	2 cut(s)	44, 82
BmrFI	CCNGG	2 cut(s)	324, 371
BmsI	GCATC	1 cut(s)	215
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	120, 201
BpmI	CTGGAG	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	303, 322, 342
BsaWI	WCCGGW	2 cut(s)	51, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 370
Bse118I	RCCGGY	1 cut(s)	143
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	324, 371
BseDI	CCNNGG	3 cut(s)	303, 322, 342
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	155, 370
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	304
Bsh1285I	CGRYCG	3 cut(s)	127, 202, 206
BshFI	GGCC	2 cut(s)	30, 308
BshNI	GGYRCC	1 cut(s)	80
BsiEI	CGRYCG	3 cut(s)	127, 202, 206
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	5 cut(s)	14, 31, 52, 78, 144
BslI	CCNNNNNNNGG	2 cut(s)	155, 370
BsmAI	GTCTC	2 cut(s)	129, 403
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	30, 308
Bsp1286I	GDGCHC	2 cut(s)	85, 338
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	48, 72, 199
Bsp1720I	GCTNAGC	1 cut(s)	348
Bsp19I	CCATGG	2 cut(s)	303, 342
BspACI	CCGC	2 cut(s)	123, 166
BspANI	GGCC	2 cut(s)	30, 308
BspCNI	CTCAG	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	44, 82
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	303, 322, 342
BssMI	GATC	3 cut(s)	48, 72, 199
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	303, 342
Bst2UI	CCWGG	2 cut(s)	324, 371
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	211, 248, 348
BstDSI	CCRYGG	2 cut(s)	303, 342
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	3 cut(s)	51, 75, 202
BstMAI	GTCTC	2 cut(s)	129, 403
BstMBI	GATC	3 cut(s)	48, 72, 199
BstMCI	CGRYCG	3 cut(s)	127, 202, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 253, 353
BstNI	CCWGG	2 cut(s)	324, 371
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	322, 369
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	2 cut(s)	120, 201
BsuRI	GGCC	2 cut(s)	30, 308
BtgI	CCRYGG	2 cut(s)	303, 342
BtrI	CACGTC	2 cut(s)	178, 244
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	146, 168
CpoI	CGGWCCG	2 cut(s)	146, 168
CseI	GACGC	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	361
CspI	CGGWCCG	2 cut(s)	146, 168
CviAII	CATG	2 cut(s)	304, 343
CviJI	RGCY	7 cut(s)	30, 143, 256, 295, 308, 347, 352
CviKI_1	RGCY	7 cut(s)	30, 143, 256, 295, 308, 347, 352
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	211, 248, 348
DpnI	GATC	3 cut(s)	50, 74, 201
DpnII	GATC	3 cut(s)	48, 72, 199
DrdI	GACNNNNNNGTC	1 cut(s)	182
DriI	GACNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	28
Eam1105I	GACNNNNNGTC	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	303, 342
Eco47I	GGWCC	2 cut(s)	146, 168
EcoRII	CCWGG	2 cut(s)	322, 369
EcoT14I	CCWWGG	2 cut(s)	303, 342
ErhI	CCWWGG	2 cut(s)	303, 342
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	2 cut(s)	307, 346
FaiI	YATR	3 cut(s)	305, 317, 344
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	2 cut(s)	303, 342
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	30, 308
HapII	CCGG	5 cut(s)	14, 31, 52, 78, 144
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	307, 346
HpaII	CCGG	5 cut(s)	14, 31, 52, 78, 144
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	134, 150, 172
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	13, 64
HpyAV	CCTTC	4 cut(s)	113, 149, 246, 259
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	177, 243
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 253, 353
HpyF3I	CTNAG	3 cut(s)	211, 248, 348
HpySE526I	ACGT	2 cut(s)	177, 243
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	307, 346
Kpn2I	TCCGGA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	48, 72, 199
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	215
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	177, 243
MalI	GATC	3 cut(s)	50, 74, 201
MboI	GATC	3 cut(s)	48, 72, 199
MboII	GAAGA	3 cut(s)	125, 203, 206
MhlI	GDGCHC	2 cut(s)	85, 338
MnlI	CCTC	5 cut(s)	33, 103, 152, 319, 320
MroI	TCCGGA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	5 cut(s)	14, 31, 52, 78, 144
MspR9I	CCNGG	2 cut(s)	324, 371
MvaI	CCWGG	2 cut(s)	324, 371
MwoI	GCNNNNNNNGC	3 cut(s)	10, 253, 353
NcoI	CCATGG	2 cut(s)	303, 342
NdeII	GATC	3 cut(s)	48, 72, 199
NlaIII	CATG	2 cut(s)	307, 346
NlaIV	GGNNCC	2 cut(s)	44, 82
NmeAIII	GCCGAG	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	294
Ple19I	CGATCG	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	322, 369
PspGI	CCWGG	2 cut(s)	322, 369
PspN4I	GGNNCC	2 cut(s)	44, 82
PspPI	GGNCC	2 cut(s)	146, 168
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	341
Rsr2I	CGGWCCG	2 cut(s)	146, 168
RsrII	CGGWCCG	2 cut(s)	146, 168
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	48, 72, 199
Sau96I	GGNCC	2 cut(s)	146, 168
ScrFI	CCNGG	2 cut(s)	324, 371
SduI	GDGCHC	2 cut(s)	85, 338
SetI	ASST	6 cut(s)	163, 180, 246, 297, 354, 372
SexAI	ACCWGGT	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	215
SinI	GGWCC	2 cut(s)	146, 168
SmiMI	CAYNNNNRTG	1 cut(s)	341
SsiI	CCGC	2 cut(s)	123, 166
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	322, 369
StyI	CCWWGG	2 cut(s)	303, 342
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	180, 246
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	192
TseI	GCWGC	1 cut(s)	292
TspGWI	ACGGA	2 cut(s)	33, 231
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	146, 168
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.