Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

16091483 .. 16094445

Gene Structure 2963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1186500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATCGCATCGAGGTTTCCAATCTCAATCGCCAGTTCCTCTTCAGACTTGAAGATGTAGGTAAGCCAAAGGCTGAGGTGGCTGCGAAACGTGTCATGGAGAGAGTTAGTGGTGTAAATATCGTTCCACATTTTTGCCGGATCGAGGAAAAGGAGCTTGAATTTTATAGTGATTTCAGTATCATCGCCCTCGGTCTTGATTCCATTGAGGCTCGGAGCTACATCAATTCTGTTGCTTGTAGTTTTCTTGAGTATAATTCTGATGATACCCCACAAGAAGAAACCATCAAGCCTATGGTAGATGGAGGGACTGAAGGTTTTCAAGGACATGCTAGGGTCATTGTTCCAGGGGTCACTCCATGCTTTGAGTGCACAATCTGGCTTTTCCCCCCTCAAGTGAAGTTCCCTCTATGCACCCTTGCAGAAACCCCTAGAACTGCTGCTCACTGTATTGAATATGCTCACTTAATCAAATGGGATGAGGTACATAGCGGAAAGTCTTTTGATCCAGATGATCCAGAGCACATGAAGTGGGTCTATGACGAGGCTACCAAGAGAGCTGAGCTTTTCGGTATTCCAGGAGTTACATATTCTCTTACTCAGGGTGTTGTGAAGAACATCATACCAGCTATTGCTTCCACAAATGCAATTATATCAGCAGCATGTGCACTAGAGACATTGAAGATTGCATCTGGATGCAGCAAAACACTATCAAATTATTTAACGTATAATGGTGCACAAGGTCTCCACACAAAAGTGACTGAATTTGTCAGGGACAAAGACTGTCTTGTATGCGGACCGGGTGTTCTTGTTCAACTGGACACCTCAATTACTTTGCAAAAGGAGGCAAATGCTATACTATCTTTTAGTTATGATCCTTTTGATCTTATGGTTAAAACCTTCTGCATAGTGATATTTATACTCCTTGGTGTTGCTTTTGATGTCAGCTCTACTTGTTTTGTGTTATATTTTAAAAGGTTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

329

Amino Acids

36.51

Weight (kDa)

5.17

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	1 - 263	4.2e-41	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	492, 795
AclWI	GGATC	5 cut(s)	12, 149, 500, 509, 869
AcsI	RAATTY	2 cut(s)	161, 764
AcuI	CTGAAG	2 cut(s)	28, 333
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	6 cut(s)	53, 161, 323, 455, 682, 815
AjnI	CCWGG	2 cut(s)	346, 577
AleI	CACNNNNGTG	1 cut(s)	755
AloI	GAACNNNNNNTCC	2 cut(s)	789, 821
AluBI	AGCT	6 cut(s)	157, 219, 560, 565, 629, 948
AluI	AGCT	6 cut(s)	157, 219, 560, 565, 629, 948
Alw21I	GWGCWC	4 cut(s)	374, 525, 670, 739
Alw26I	GTCTC	2 cut(s)	668, 749
Alw44I	GTGCAC	3 cut(s)	370, 666, 735
AlwI	GGATC	5 cut(s)	12, 149, 500, 509, 869
ApaLI	GTGCAC	3 cut(s)	370, 666, 735
ApeKI	GCWGC	4 cut(s)	83, 440, 659, 699
ApoI	RAATTY	2 cut(s)	161, 764
Asp700I	GAANNNNTTC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	797
AsuC2I	CCSGG	1 cut(s)	801
AvaII	GGWCC	1 cut(s)	797
BaeGI	GKGCMC	3 cut(s)	374, 670, 739
Bbv12I	GWGCWC	4 cut(s)	374, 525, 670, 739
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	4 cut(s)	70, 427, 671, 711
BccI	CCATC	2 cut(s)	293, 296
BciT130I	CCWGG	2 cut(s)	348, 579
BcnI	CCSGG	1 cut(s)	801
BcoDI	GTCTC	2 cut(s)	668, 749
BfaI	CTAG	3 cut(s)	333, 432, 671
BisI	GCNGC	4 cut(s)	84, 441, 660, 700
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	4 cut(s)	85, 442, 661, 701
Bme1390I	CCNGG	3 cut(s)	348, 579, 801
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	797
BmrFI	CCNGG	3 cut(s)	348, 579, 801
BmsI	GCATC	3 cut(s)	18, 686, 698
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	269, 378
BpuMI	CCSGG	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	190, 347, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	34, 822
BseBI	CCWGG	2 cut(s)	348, 579
BseDI	CCNNGG	3 cut(s)	190, 347, 925
BseGI	GGATG	2 cut(s)	484, 701
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	66, 552, 614
BseNI	ACTGG	2 cut(s)	34, 822
BseSI	GKGCMC	3 cut(s)	374, 670, 739
BseXI	GCAGC	4 cut(s)	70, 427, 671, 711
BsiHKAI	GWGCWC	4 cut(s)	374, 525, 670, 739
BsiSI	CCGG	2 cut(s)	139, 800
BslFI	GGGAC	2 cut(s)	322, 788
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	668, 749
BsmFI	GGGAC	2 cut(s)	322, 788
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	4 cut(s)	374, 525, 670, 739
Bsp143I	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	2 cut(s)	492, 795
BspCNI	CTCAG	3 cut(s)	67, 553, 613
BspPI	GGATC	5 cut(s)	12, 149, 500, 509, 869
BspTNI	GGTCTC	1 cut(s)	749
BsrI	ACTGG	2 cut(s)	34, 822
BssECI	CCNNGG	3 cut(s)	190, 347, 925
BssMI	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
BssT1I	CCWWGG	1 cut(s)	925
Bst2UI	CCWGG	2 cut(s)	348, 579
Bst4CI	ACNGT	2 cut(s)	449, 785
Bst6I	CTCTTC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstDEI	CTNAG	3 cut(s)	75, 561, 600
BstF5I	GGATG	2 cut(s)	484, 701
BstKTI	GATC	6 cut(s)	7, 144, 508, 517, 877, 886
BstMAI	GTCTC	2 cut(s)	668, 749
BstMBI	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 369, 665
BstNI	CCWGG	2 cut(s)	348, 579
BstNSI	RCATGY	2 cut(s)	332, 666
BstSCI	CCNGG	3 cut(s)	346, 577, 799
BstSLI	GKGCMC	3 cut(s)	374, 670, 739
BstV1I	GCAGC	4 cut(s)	70, 427, 671, 711
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	484, 701
BtsIMutI	CAGTG	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	797
CpoI	CGGWCCG	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	485
CspI	CGGWCCG	1 cut(s)	797
CviAII	CATG	5 cut(s)	97, 329, 360, 526, 663
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	3 cut(s)	75, 561, 600
DpnI	GATC	6 cut(s)	6, 143, 507, 516, 876, 885
DpnII	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
DraI	TTTAAA	1 cut(s)	973
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	925
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	2 cut(s)	28, 333
EcoRII	CCWGG	2 cut(s)	346, 577
EcoT14I	CCWWGG	1 cut(s)	925
ErhI	CCWWGG	1 cut(s)	925
FaeI	CATG	5 cut(s)	100, 332, 363, 529, 666
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	2 cut(s)	322, 788
FatI	CATG	5 cut(s)	96, 328, 359, 525, 662
Fnu4HI	GCNGC	4 cut(s)	84, 441, 660, 700
FokI	GGATG	2 cut(s)	491, 708
Fsp4HI	GCNGC	4 cut(s)	84, 441, 660, 700
FspBI	CTAG	3 cut(s)	333, 432, 671
GluI	GCNGC	4 cut(s)	84, 441, 660, 700
HapII	CCGG	2 cut(s)	139, 800
Hin1II	CATG	5 cut(s)	100, 332, 363, 529, 666
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	139, 800
Hpy166II	GTNNAC	3 cut(s)	372, 668, 737
Hpy188I	TCNGA	3 cut(s)	47, 216, 262
Hpy188III	TCNNGA	5 cut(s)	197, 248, 509, 518, 693
Hpy8I	GTNNAC	3 cut(s)	372, 668, 737
HpyAV	CCTTC	2 cut(s)	308, 910
HpyCH4III	ACNGT	2 cut(s)	449, 785
HpyCH4IV	ACGT	2 cut(s)	91, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 369, 665
HpyF3I	CTNAG	3 cut(s)	75, 561, 600
HpySE526I	ACGT	2 cut(s)	91, 725
Hsp92II	CATG	5 cut(s)	100, 332, 363, 529, 666
Kzo9I	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
LmnI	GCTCC	2 cut(s)	154, 216
Lsp1109I	GCAGC	4 cut(s)	70, 427, 671, 711
LweI	GCATC	3 cut(s)	18, 686, 698
MaeI	CTAG	3 cut(s)	333, 432, 671
MaeII	ACGT	2 cut(s)	91, 725
MaeIII	GTNAC	3 cut(s)	352, 583, 757
MalI	GATC	6 cut(s)	6, 143, 507, 516, 876, 885
MboI	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
MboII	GAAGA	5 cut(s)	34, 65, 290, 625, 694
MhlI	GDGCHC	4 cut(s)	374, 525, 670, 739
MluCI	AATT	7 cut(s)	161, 226, 256, 648, 715, 764, 828
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	5 cut(s)	467, 722, 894, 972, 985
MslI	CAYNNNNRTG	2 cut(s)	694, 755
MspI	CCGG	2 cut(s)	139, 800
MspR9I	CCNGG	3 cut(s)	348, 579, 801
MvaI	CCWGG	2 cut(s)	348, 579
MwoI	GCNNNNNNNGC	3 cut(s)	80, 369, 665
NciI	CCSGG	1 cut(s)	801
NdeII	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
NlaIII	CATG	5 cut(s)	100, 332, 363, 529, 666
NmuCI	GTSAC	2 cut(s)	352, 757
NspI	RCATGY	2 cut(s)	332, 666
OliI	CACNNNNGTG	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	85, 442, 661, 701
Psp6I	CCWGG	2 cut(s)	346, 577
PspGI	CCWGG	2 cut(s)	346, 577
PspPI	GGNCC	1 cut(s)	797
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	2 cut(s)	694, 755
Rsr2I	CGGWCCG	1 cut(s)	797
RsrII	CGGWCCG	1 cut(s)	797
SaqAI	TTAA	5 cut(s)	467, 722, 894, 972, 985
SatI	GCNGC	4 cut(s)	84, 441, 660, 700
Sau3AI	GATC	6 cut(s)	4, 141, 505, 514, 874, 883
Sau96I	GGNCC	1 cut(s)	797
ScrFI	CCNGG	3 cut(s)	348, 579, 801
SduI	GDGCHC	4 cut(s)	374, 525, 670, 739
SfaNI	GCATC	3 cut(s)	18, 686, 698
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	2 cut(s)	694, 755
SmlI	CTYRAG	2 cut(s)	248, 393
SmoI	CTYRAG	2 cut(s)	248, 393
Sse9I	AATT	7 cut(s)	161, 226, 256, 648, 715, 764, 828
SsiI	CCGC	2 cut(s)	492, 795
SspMI	CTAG	3 cut(s)	333, 432, 671
StyD4I	CCNGG	3 cut(s)	346, 577, 799
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	2 cut(s)	449, 785
TaiI	ACGT	2 cut(s)	94, 728
TaqI	TCGA	2 cut(s)	12, 144
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	7 cut(s)	161, 226, 256, 648, 715, 764, 828
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	5 cut(s)	467, 722, 894, 972, 985
Tru9I	TTAA	5 cut(s)	467, 722, 894, 972, 985
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	2 cut(s)	352, 757
TseI	GCWGC	4 cut(s)	83, 440, 659, 699
Tsp45I	GTSAC	2 cut(s)	352, 757
TspDTI	ATGAA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	452
VneI	GTGCAC	3 cut(s)	370, 666, 735
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	2 cut(s)	161, 764
XceI	RCATGY	2 cut(s)	332, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	333, 432, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.