Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

6053289 .. 6056495

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0046000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGACCAGTACTGAAAATAATTACTTTCATGAAGCCAGCTACATGGACCAAGCAGGTCAATTACGAACCACAAGAGTGCCTGTAGTTCAAGAACTAGCTCGCCGAGGACTCAAACACCTGCCGGAGAGGTTCGTGGCGCTGCAACCTGAACACGATCAGTACCCCGCTTTATCCAGCCATCATGTCTCGGAACCCCTACCATCCATAAACATGACCAAATTACGAGGCAACGATCGAGCCGAAGAGCTGGCCAAGCTACTAACTGGAGCTAAGACATGGGGTATGGTTGTAGTTGAAGGCCACGGTGTAGCTGAGTCTGTTTTGCATGGTGTGAGGGATGTGGTGAAGGAGTTCTTTGGGTTGTCGTTTGACGAGAAGAAGGCAAGCGTTGGGTCGTATGTAAGCGTGGATAACATGGGGTATGGCCGGAACTTTGTCAAGTCGGAAGACCAGCCTTTGGATTGGATTGATCGTGTGACCGTGAAAGCAGCTCCGGCCGGAGCAACCGAAGGGCTTCATGTTTGGCCTCAAAGGCCTGCTAATTTCAGGCAAGCTATAGAGCAATATGTTGCAGAAGCAAGAAACATCTTCAATGACATACTTGAAGCTCTTCCTGAAGCCTTATCACTAGAAAGACATGTATTCCTCCAAAACTTTGACCCCCACGAGACTGAGATCAATGTGAGAGTGAACTACTACCCCCCATGCCCAAGGCCAGACCAAGCCCTTGGTCTAACCCCACACACTGATGCCAGTGCCCTCACTCTCCTTCTTCAATTCGAAGCCAGCGGAGGGCTCCAAGTGTTGAAGGACATGGAATGGATCACCGTGCCTTGGCCAAAAGACGCAATGCTAGTGAATGTGGGAGACCTACTAGAGATTATGAGCAATGGGATGTTTAGAAGTCCATGGCATAGGGTTGTTACCCAAATGGATGTAGAGAGGTTTTCGGTGGCTTTATTCTATAATCCAAGTCCTCGAACTCAGATTGAGCCGATTGGGAATTGTTCATTGGCAAATGATGATGATGTTGAGGGGTATAAGAAGGTGGTTGTGGGTGACTATTTGCAACATTTTTATAGGATTAGTCCTACTGTGAAGAAACAAGCTATCAGCTTTGCCAAAAGAGTACCCAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009228 GO:0009987 GO:0010941 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0060548 GO:0065007 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 SNO

Protein Analysis

381

Amino Acids

42.98

Weight (kDa)

5.74

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 178	1.7e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 325	1.5e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	129
Acc36I	ACCTGC	2 cut(s)	47, 129
AccB7I	CCANNNNNTGG	1 cut(s)	460
AciI	CCGC	2 cut(s)	168, 792
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	4 cut(s)	252, 427, 498, 839
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	3 cut(s)	13, 164, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	460, 795, 837
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	6 cut(s)	92, 299, 595, 608, 779, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AleI	CACNNNNGTG	1 cut(s)	77
Alw26I	GTCTC	3 cut(s)	193, 665, 864
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	8 cut(s)	252, 301, 427, 498, 527, 536, 716, 839
ApeKI	GCWGC	2 cut(s)	142, 491
Asp700I	GAANNNNTTC	3 cut(s)	353, 516, 612
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	358, 820, 1073
AsuII	TTCGAA	1 cut(s)	783
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	763
BalI	TGGCCA	2 cut(s)	254, 841
BanII	GRGCYC	1 cut(s)	801
BauI	CACGAG	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	129, 503
BccI	CCATC	2 cut(s)	189, 211
BcoDI	GTCTC	3 cut(s)	193, 665, 864
BfaI	CTAG	4 cut(s)	98, 632, 857, 878
BfmI	CTRYAG	2 cut(s)	84, 558
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	47, 129
BglI	GCCNNNNNGGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	143, 492
BlsI	GCNGC	2 cut(s)	144, 493
BmcAI	AGTACT	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	195, 800
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
Bsc4I	CCNNNNNNNGG	3 cut(s)	460, 795, 837
Bse1I	ACTGG	3 cut(s)	9, 271, 756
Bse3DI	GCAATG	2 cut(s)	858, 898
BseDI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
BseGI	GGATG	4 cut(s)	203, 346, 903, 943
BseLI	CCNNNNNNNGG	3 cut(s)	460, 795, 837
BseMI	GCAATG	2 cut(s)	858, 898
BseMII	CTCAG	3 cut(s)	306, 666, 1001
BseNI	ACTGG	3 cut(s)	9, 271, 756
BseSI	GKGCMC	1 cut(s)	763
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	129, 503
Bsh1285I	CGRYCG	2 cut(s)	238, 501
BshFI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
BsiEI	CGRYCG	2 cut(s)	238, 501
BsiSI	CCGG	4 cut(s)	125, 430, 497, 501
BslI	CCNNNNNNNGG	3 cut(s)	460, 795, 837
BsmAI	GTCTC	3 cut(s)	193, 665, 864
BsnI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
Bso31I	GGTCTC	1 cut(s)	864
Bsp119I	TTCGAA	1 cut(s)	783
Bsp1286I	GDGCHC	2 cut(s)	763, 801
Bsp143I	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
Bsp19I	CCATGG	1 cut(s)	911
BspACI	CCGC	2 cut(s)	168, 792
BspANI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
BspCNI	CTCAG	3 cut(s)	307, 667, 1000
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	195, 800
BspMI	ACCTGC	2 cut(s)	47, 129
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	2 cut(s)	240, 618
BspT104I	TTCGAA	1 cut(s)	783
BspTNI	GGTCTC	1 cut(s)	864
BsrDI	GCAATG	2 cut(s)	858, 898
BsrI	ACTGG	3 cut(s)	9, 271, 756
BssECI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
BssMI	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
BssSI	CACGAG	1 cut(s)	668
BssT1I	CCWWGG	4 cut(s)	713, 730, 836, 911
Bst2BI	CACGAG	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	308, 484, 832, 1099
Bst6I	CTCTTC	2 cut(s)	240, 618
BstBI	TTCGAA	1 cut(s)	783
BstC8I	GCNNGC	7 cut(s)	40, 103, 252, 388, 540, 555, 790
BstDEI	CTNAG	4 cut(s)	273, 315, 675, 987
BstDSI	CCRYGG	2 cut(s)	304, 911
BstF5I	GGATG	4 cut(s)	203, 346, 903, 943
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	6 cut(s)	160, 238, 475, 681, 828, 1142
BstMAI	GTCTC	3 cut(s)	193, 665, 864
BstMBI	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
BstMCI	CGRYCG	2 cut(s)	238, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 497, 535
BstNSI	RCATGY	1 cut(s)	644
BstSFI	CTRYAG	2 cut(s)	84, 558
BstSLI	GKGCMC	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	129, 503
BstV2I	GAAGAC	1 cut(s)	456
BstXI	CCANNNNNNTGG	2 cut(s)	46, 731
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
BtgI	CCRYGG	2 cut(s)	304, 911
BtsCI	GGATG	4 cut(s)	203, 346, 903, 943
BtsIMutI	CAGTG	2 cut(s)	747, 763
BveI	ACCTGC	2 cut(s)	47, 129
Cac8I	GCNNGC	7 cut(s)	40, 103, 252, 388, 540, 555, 790
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	3 cut(s)	12, 163, 1133
CviQI	GTAC	3 cut(s)	12, 163, 1133
DdeI	CTNAG	4 cut(s)	273, 315, 675, 987
DpnI	GATC	6 cut(s)	159, 237, 474, 680, 827, 1141
DpnII	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
EaeI	YGGCCR	4 cut(s)	252, 427, 498, 839
EagI	CGGCCG	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	240, 618
EarI	CTCTTC	2 cut(s)	240, 618
EclXI	CGGCCG	1 cut(s)	498
Eco130I	CCWWGG	4 cut(s)	713, 730, 836, 911
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	639
EcoT14I	CCWWGG	4 cut(s)	713, 730, 836, 911
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	4 cut(s)	713, 730, 836, 911
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	143, 492
FokI	GGATG	4 cut(s)	190, 353, 910, 950
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	2 cut(s)	143, 492
FspBI	CTAG	4 cut(s)	98, 632, 857, 878
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	143, 492
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
HapII	CCGG	4 cut(s)	125, 430, 497, 501
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	111, 317
HpaII	CCGG	4 cut(s)	125, 430, 497, 501
HphI	GGTGA	3 cut(s)	358, 820, 1073
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	3 cut(s)	193, 448, 990
Hpy188III	TCNNGA	3 cut(s)	32, 92, 617
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	7 cut(s)	293, 343, 376, 506, 782, 805, 1042
HpyCH4III	ACNGT	4 cut(s)	308, 484, 832, 1099
HpyCH4V	TGCA	4 cut(s)	145, 328, 575, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 497, 535
HpyF3I	CTNAG	4 cut(s)	273, 315, 675, 987
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
LguI	GCTCTTC	2 cut(s)	240, 618
LmnI	GCTCC	4 cut(s)	269, 499, 503, 804
Lsp1109I	GCAGC	2 cut(s)	129, 503
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	4 cut(s)	98, 632, 857, 878
MaeIII	GTNAC	3 cut(s)	478, 925, 1061
MalI	GATC	6 cut(s)	159, 237, 474, 680, 827, 1141
MboI	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
MboII	GAAGA	7 cut(s)	257, 391, 461, 583, 605, 767, 1114
MhlI	GDGCHC	2 cut(s)	763, 801
MlsI	TGGCCA	2 cut(s)	254, 841
MluCI	AATT	6 cut(s)	22, 62, 221, 544, 779, 1006
MluNI	TGGCCA	2 cut(s)	254, 841
MlyI	GAGTC	2 cut(s)	105, 326
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	2 cut(s)	254, 841
MroXI	GAANNNNTTC	3 cut(s)	353, 516, 612
MscI	TGGCCA	2 cut(s)	254, 841
MslI	CAYNNNNRTG	3 cut(s)	77, 212, 750
Msp20I	TGGCCA	2 cut(s)	254, 841
MspA1I	CMGCKG	1 cut(s)	792
MspI	CCGG	4 cut(s)	125, 430, 497, 501
MwoI	GCNNNNNNNGC	3 cut(s)	256, 497, 535
NcoI	CCATGG	1 cut(s)	911
NdeII	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
NlaIV	GGNNCC	2 cut(s)	195, 800
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	478, 1061
NspI	RCATGY	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	783
OliI	CACNNNNGTG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	2 cut(s)	240, 618
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	3 cut(s)	353, 516, 612
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	144, 493
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	2 cut(s)	105, 325
PpsI	GAGTC	2 cut(s)	105, 325
PscI	ACATGT	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	195, 800
PspPI	GGNCC	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	3 cut(s)	13, 164, 1134
RsaNI	GTAC	3 cut(s)	12, 163, 1133
RseI	CAYNNNNRTG	3 cut(s)	77, 212, 750
SapI	GCTCTTC	2 cut(s)	240, 618
SatI	GCNGC	2 cut(s)	143, 492
Sau3AI	GATC	6 cut(s)	157, 235, 472, 678, 825, 1139
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	2 cut(s)	105, 326
SduI	GDGCHC	2 cut(s)	763, 801
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	2 cut(s)	84, 558
SfiI	GGCCNNNNNGGCC	1 cut(s)	535
SfuI	TTCGAA	1 cut(s)	783
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	3 cut(s)	77, 212, 750
Sse9I	AATT	6 cut(s)	22, 62, 221, 544, 779, 1006
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	168, 792
SspMI	CTAG	4 cut(s)	98, 632, 857, 878
StuI	AGGCCT	1 cut(s)	538
StyI	CCWWGG	4 cut(s)	713, 730, 836, 911
TaaI	ACNGT	4 cut(s)	308, 484, 832, 1099
TaqI	TCGA	3 cut(s)	238, 783, 982
TasI	AATT	6 cut(s)	22, 62, 221, 544, 779, 1006
TatI	WGTACW	1 cut(s)	11
TscAI	CASTG	2 cut(s)	754, 763
TseFI	GTSAC	2 cut(s)	478, 1061
TseI	GCWGC	2 cut(s)	142, 491
Tsp45I	GTSAC	2 cut(s)	478, 1061
TspDTI	ATGAA	4 cut(s)	20, 48, 509, 1002
TspRI	CASTG	2 cut(s)	754, 763
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	644
XmnI	GAANNNNTTC	3 cut(s)	353, 516, 612
XspI	CTAG	4 cut(s)	98, 632, 857, 878
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.