Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081816.1

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 390

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081816.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 242 bp

ctttgcctccgaccaatatggccctcgtcggcgtgcttgctttacagggctcttacaacgaacacatagcagtgctgagaaggctgggagtgaagggcgtggagataaagaaaccagagcagctcgaaaacttggcctcactcataatccctggaggagagagcaccaccatggctaagctcgccgagtaccacaacctggtctctctatcactcaccaaaacagtctctgtcatttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

79

Amino Acids

8.44

Weight (kDa)

8.12

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	150, 197
AluBI	AGCT	2 cut(s)	123, 180
AluI	AGCT	2 cut(s)	123, 180
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	207, 231
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	20, 134
ApeKI	GCWGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	132
BciT130I	CCWGG	2 cut(s)	152, 199
BcoDI	GTCTC	2 cut(s)	207, 231
BisI	GCNGC	1 cut(s)	121
BlpI	GCTNAGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	152, 199
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	152, 199
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	150, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	152, 199
BseDI	CCNNGG	2 cut(s)	150, 170
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	2 cut(s)	22, 136
BsiHKAI	GWGCWC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	207, 231
BsnI	GGCC	2 cut(s)	22, 136
Bso31I	GGTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	52, 166
Bsp1720I	GCTNAGC	1 cut(s)	176
Bsp19I	CCATGG	1 cut(s)	170
BspANI	GGCC	2 cut(s)	22, 136
BspCNI	CTCAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	150, 170
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	152, 199
Bst4CI	ACNGT	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	34, 38, 182
BstDEI	CTNAG	2 cut(s)	76, 176
BstDSI	CCRYGG	1 cut(s)	170
BstMAI	GTCTC	2 cut(s)	207, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 181
BstNI	CCWGG	2 cut(s)	152, 199
BstSCI	CCNGG	2 cut(s)	150, 197
BstV1I	GCAGC	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	22, 136
BtgI	CCRYGG	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	34, 38, 182
CaiI	CAGNNNCTG	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	21
CsiI	ACCWGGT	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	7 cut(s)	22, 50, 84, 123, 136, 175, 180
CviKI_1	RGCY	7 cut(s)	22, 50, 84, 123, 136, 175, 180
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	76, 176
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	150, 197
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	174
FaiI	YATR	4 cut(s)	19, 67, 145, 172
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	22, 136
Hin1II	CATG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	74, 87
HpyCH4III	ACNGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 181
HpyF3I	CTNAG	2 cut(s)	76, 176
Hsp92II	CATG	1 cut(s)	174
LpnPI	CCDG	7 cut(s)	31, 70, 128, 137, 164, 184, 211
Lsp1109I	GCAGC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	52, 166
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	17, 34, 147, 148
MslI	CAYNNNNRTG	2 cut(s)	70, 169
MspR9I	CCNGG	2 cut(s)	152, 199
MvaI	CCWGG	2 cut(s)	152, 199
MwoI	GCNNNNNNNGC	2 cut(s)	81, 181
NcoI	CCATGG	1 cut(s)	170
NlaIII	CATG	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	150, 197
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	150, 197
PspPI	GGNCC	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	2 cut(s)	70, 169
SatI	GCNGC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	152, 199
SduI	GDGCHC	2 cut(s)	52, 166
SetI	ASST	3 cut(s)	125, 182, 200
SexAI	ACCWGGT	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	70, 169
StyD4I	CCNGG	2 cut(s)	150, 197
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	125
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	120
TspRI	CASTG	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.