Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

14438203 .. 14438714

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGCTGATGATAAACCCCAAGAAGAAACTGTCAACCCTATGGTCGATGGTGGGACTGAAGGTTTTCAAGGACATGCCAGGGTCATTATGCCAGGGATCAGTCCATGCATGCTTTGAGTGTACAATCTGGCTTTTCCCCCCTCAAGTGAAGTTCCCTTTATGCACACTTGCAGAAATCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGGATGAGGTACATAGCGGAGAGGCTTTTGATCCAGATGACCCTGAACATATAAAGTGGGTGTATGATGAGGTCAATTATGGCAATTATTTAGTGATTTCTCTATTCCTTTTATGGACCTTTAATTATGTTCCTTTCATTTATTTATTTATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

127

Amino Acids

14.87

Weight (kDa)

5.63

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	106, 251
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	2 cut(s)	124, 237
AgsI	TTSAA	2 cut(s)	70, 206
AjnI	CCWGG	2 cut(s)	79, 93
AlwI	GGATC	2 cut(s)	106, 251
ApeKI	GCWGC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	81, 95
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	81, 95
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	81, 95
BpuEI	CTTGAG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	80, 94
BseBI	CCWGG	2 cut(s)	81, 95
BseDI	CCNNGG	2 cut(s)	80, 94
BseGI	GGATG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	98, 256
BspACI	CCGC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	106, 251
BsrGI	TGTACA	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	80, 94
BssMI	GATC	2 cut(s)	98, 256
Bst2UI	CCWGG	2 cut(s)	81, 95
Bst4CI	ACNGT	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	2 cut(s)	101, 259
BstMBI	GATC	2 cut(s)	98, 256
BstNI	CCWGG	2 cut(s)	81, 95
BstNSI	RCATGY	2 cut(s)	79, 114
BstSCI	CCNGG	2 cut(s)	79, 93
BstV1I	GCAGC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	123, 236
CviAII	CATG	3 cut(s)	76, 107, 111
CviJI	RGCY	2 cut(s)	133, 251
CviKI_1	RGCY	2 cut(s)	133, 251
CviQI	GTAC	2 cut(s)	123, 236
DpnI	GATC	2 cut(s)	100, 258
DpnII	GATC	2 cut(s)	98, 256
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	79, 93
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	3 cut(s)	79, 110, 114
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	3 cut(s)	75, 106, 110
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	79, 110, 114
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	36, 123
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	2 cut(s)	36, 123
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	110, 165, 173
Hsp92II	CATG	3 cut(s)	79, 110, 114
Kzo9I	GATC	2 cut(s)	98, 256
LpnPI	CCDG	7 cut(s)	66, 80, 93, 107, 115, 273, 282
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	183
MalI	GATC	2 cut(s)	100, 258
MboI	GATC	2 cut(s)	98, 256
MboII	GAAGA	1 cut(s)	37
MluCI	AATT	4 cut(s)	219, 301, 310, 349
MnlI	CCTC	4 cut(s)	153, 226, 241, 289
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	222, 348
MspR9I	CCNGG	2 cut(s)	81, 95
MvaI	CCWGG	2 cut(s)	81, 95
NdeII	GATC	2 cut(s)	98, 256
NlaIII	CATG	3 cut(s)	79, 110, 114
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	2 cut(s)	79, 114
PaeI	GCATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	79, 93
PspGI	CCWGG	2 cut(s)	79, 93
PspPI	GGNCC	1 cut(s)	342
RsaI	GTAC	2 cut(s)	124, 237
RsaNI	GTAC	2 cut(s)	123, 236
SaqAI	TTAA	2 cut(s)	222, 348
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	98, 256
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	81, 95
SetI	ASST	5 cut(s)	66, 219, 237, 300, 347
SinI	GGWCC	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	4 cut(s)	219, 301, 310, 349
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	79, 93
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	47
TasI	AATT	4 cut(s)	219, 301, 310, 349
TatI	WGTACW	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	222, 348
Tru9I	TTAA	2 cut(s)	222, 348
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	342
XceI	RCATGY	2 cut(s)	79, 114
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.