Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

34286607 .. 34310732

Gene Structure 24126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG186400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATGCACAATCTTCGAAAATATGAGGTTCCATTGAAAAGATTTGCTGGCCTCAAGGATACCCTTTTTTTCACGTGTGAATTTCTCTCAAGTAGTTGCTGGGGTTTCTTTGGGCGCACCCAAAATATAATGGTGCAAGTGCTGAGAAGGCAAGGAGTGAAGGGCGTGGAGATAAAGAAACCAGAGCAGCTCAAAACCGTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCTAAGCTCGCCGAGTACCACAACCTGTCCAATACTCATCTTATTGCTTTGCTAGTTTTGTTTCCAGAGGTTGCTCTTTGTGCGGCTATTGTAGCTAATCTCAACATTGTATACTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009228 GO:0009987 GO:0010941 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0060548 GO:0065007 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 SNO

Protein Analysis

120

Amino Acids

13.46

Weight (kDa)

9.33

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	46 - 91	2.3e-09	SNO glutamine amidotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	80
AcvI	CACGTG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	190, 247, 335
AluI	AGCT	3 cut(s)	190, 247, 335
Alw21I	GWGCWC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	49, 201
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	16
BbrPI	CACGTG	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	188, 324
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	2 cut(s)	189, 325
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	16
BpuEI	CTTGAG	2 cut(s)	38, 73
BsaAI	YACGTR	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	198, 217, 237
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	198, 217, 237
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	99
BshFI	GGCC	2 cut(s)	51, 203
BsiHKAI	GWGCWC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	51, 203
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp1720I	GCTNAGC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	51, 203
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	198, 217, 237
BssNAI	GTATAC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	49, 249
BstDEI	CTNAG	2 cut(s)	143, 243
BstDSI	CCRYGG	2 cut(s)	198, 237
BstHHI	GCGC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 248, 320, 332
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	51, 203
BtgI	CCRYGG	2 cut(s)	198, 237
Cac8I	GCNNGC	2 cut(s)	49, 249
CfoI	GCGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	238, 360
CviJI	RGCY	7 cut(s)	51, 190, 203, 242, 247, 326, 335
CviKI_1	RGCY	7 cut(s)	51, 190, 203, 242, 247, 326, 335
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	143, 243
Eco130I	CCWWGG	1 cut(s)	237
Eco72I	CACGTG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	241, 363
FaiI	YATR	6 cut(s)	24, 128, 212, 239, 352, 361
FatI	CATG	2 cut(s)	237, 359
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	188, 324
Fsp4HI	GCNGC	2 cut(s)	188, 324
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	188, 324
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	51, 203
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	241, 363
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	141, 154
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	7, 136, 359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 248, 320, 332
HpyF3I	CTNAG	2 cut(s)	143, 243
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	241, 363
HspAI	GCGC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	33, 85, 195, 204, 231, 278, 318
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	74
MboII	GAAGA	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	5 cut(s)	19, 62, 214, 215, 301
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	148, 248, 320, 332
NcoI	CCATGG	1 cut(s)	237
NlaIII	CATG	2 cut(s)	241, 363
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	189, 325
PmaCI	CACGTG	1 cut(s)	75
PmlI	CACGTG	1 cut(s)	75
Ppu21I	YACGTR	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	2 cut(s)	188, 324
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	7 cut(s)	30, 77, 192, 249, 267, 312, 337
SfuI	TTCGAA	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	53, 88
SmoI	CTYRAG	2 cut(s)	53, 88
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	80
TauI	GCSGC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.