pycom16g15600

NEDD8-activating enzyme E1 catalytic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
11596304 .. 11600079
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15600.2

Sequence Viewer

Length: 1173 bp
ATGAAGATCGTTCAGTTTGGAAGCGTGAAAATCAAGCCTACTACAGTCAGTCACACTCGCCCCGTGGAAGAAGTATTACAATTAGCAATGGCACCAGCGTCCACAGCCCAAGAGAGCCGATCGAGGGACCTCGATAAACTCCTCCTCCGCCCCGGTAATCTCGTCGGAACCGCCTTCGAACCCGGCCCTGGACTACGAGATGATCTCAAAGAGTACGCCAGAGTTTTGGTGGTTGGGGCTGGTGGGTTGGGCTGTGAGCTGCTCAAGGACTTGGCTTTGTCTGGTTTCCGGGAGCTCGAAGTCATAGACATGGATCGCATCGAGGTTTCCAATCTCAATCGCCAGTTCCTCTTCAGACTTGAAGATGTAGGTAAGCCAAAGGCTGAGGTGGCTGCGAAACGTGTCATGGAGAGAGTTAGTGGTGTAAATATCGTTCCACATTTTTGCCGGATTGAGGACAAGGAGCTTGAATTTTATAGTGATTTCAGTATCATCGCCCTCGGTCTTGATTCCATTGAGGCTCGGAGCTACATCAATTCTGTTGCTTGTAGTTTTCTTGAGTATAATTCTGATGATACCCCACAAGAAGAAACCATCAAGCCTATGGTAGATGGAGGGACTGAAGGTTTTCAAGGACATGCTAGGGTCATTGTTCCAGGGGTCACTCCATGCTTTGAGTGCACCATCTGGCTTTTCCCCCCTCAAGTGAAGTTCCCTCTATGCACCCTTGCAGAAACCCCTAGAACTGCTGCTCACTGTATTGAATATGCTCACTTGATCAAATGGGATGAGAGTTACATAGCGGAAAGTCTTTTGATCCAGATCGATCCAGAGCATATGAAGTGGGTCTATGACGAGGCTACCAAGAGAGCTGAGCTTTTCGGTATTCCAGGAGTTACATATTCTTTTACTCAGGGTGTTGTGAAGAACATCATACCAGCTATTGCTTCTACAAATGCAATTATATCAGCGGCATGTGCACTAGAGACATTGAAGATTGCATCTGGATGCAGCAAAACACTATCAAACTATTTGACGTATAATGGTGCACAAGGTCTCCACACAAAAGTGACTGAATTTGTCAGGGACAAAGACTGTCTTGTATGCGGACCGGGTGTTCTTGTTCAACTGGACACCTCAATTACTTTGCAAAAGTTCATTGATCCATCTTGA

Protein Analysis

391

Amino Acids

42.96

Weight (kDa)

5.19

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 5 cut(s) 148, 171, 803, 971, 1107
AclWI GGATC 4 cut(s) 321, 811, 821, 1157
AcsI RAATTY 2 cut(s) 470, 1076
AcuI CTGAAG 2 cut(s) 337, 642
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 124, 188, 454
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 6 cut(s) 362, 470, 632, 764, 994, 1127
AjnI CCWGG 3 cut(s) 187, 655, 889
AleI CACNNNNGTG 1 cut(s) 1067
AloI GAACNNNNNNTCC 2 cut(s) 1101, 1133
AluBI AGCT 7 cut(s) 259, 295, 466, 528, 872, 877, 941
AluI AGCT 7 cut(s) 259, 295, 466, 528, 872, 877, 941
Alw21I GWGCWC 4 cut(s) 297, 683, 982, 1051
Alw26I GTCTC 2 cut(s) 980, 1061
Alw44I GTGCAC 3 cut(s) 679, 978, 1047
AlwI GGATC 4 cut(s) 321, 811, 821, 1157
AoxI GGCC 1 cut(s) 184
ApaLI GTGCAC 3 cut(s) 679, 978, 1047
ApeKI GCWGC 4 cut(s) 259, 392, 749, 1011
ApoI RAATTY 2 cut(s) 470, 1076
Asp700I GAANNNNTTC 1 cut(s) 627
AspS9I GGNCC 3 cut(s) 127, 185, 1109
AsuC2I CCSGG 4 cut(s) 153, 183, 290, 1113
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 2 cut(s) 127, 1109
BaeGI GKGCMC 3 cut(s) 683, 982, 1051
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 297
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
Bbv12I GWGCWC 4 cut(s) 297, 683, 982, 1051
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 4 cut(s) 246, 379, 736, 1023
BccI CCATC 3 cut(s) 602, 605, 692
BciT130I CCWGG 3 cut(s) 189, 657, 891
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 4 cut(s) 153, 183, 290, 1113
BcoDI GTCTC 2 cut(s) 980, 1061
BfaI CTAG 3 cut(s) 642, 741, 983
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 5 cut(s) 260, 393, 750, 972, 1012
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 5 cut(s) 261, 394, 751, 973, 1013
Bme1390I CCNGG 7 cut(s) 153, 183, 189, 290, 657, 891, 1113
Bme18I GGWCC 2 cut(s) 127, 1109
BmgT120I GGNCC 3 cut(s) 127, 185, 1109
BmiI GGNNCC 3 cut(s) 93, 128, 169
BmrFI CCNGG 7 cut(s) 153, 183, 189, 290, 657, 891, 1113
BmsI GCATC 3 cut(s) 327, 998, 1010
BplI GAGNNNNNCTC 2 cut(s) 189, 221
Bpu10I CCTNAGC 1 cut(s) 384
Bpu1102I GCTNAGC 1 cut(s) 873
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 3 cut(s) 248, 578, 687
BpuMI CCSGG 4 cut(s) 153, 183, 290, 1113
Bsa29I ATCGAT 1 cut(s) 825
BsaBI GATNNNNATC 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 5 cut(s) 63, 151, 187, 499, 656
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 1041, 1071
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 188, 454
Bse1I ACTGG 2 cut(s) 343, 1134
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 821
BseBI CCWGG 3 cut(s) 189, 657, 891
BseCI ATCGAT 1 cut(s) 825
BseDI CCNNGG 5 cut(s) 63, 151, 187, 499, 656
BseGI GGATG 2 cut(s) 793, 1013
BseJI GATNNNNATC 1 cut(s) 821
BseLI CCNNNNNNNGG 3 cut(s) 124, 188, 454
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 375, 864, 926
BseNI ACTGG 2 cut(s) 343, 1134
BseRI GAGGAG 2 cut(s) 131, 134
BseSI GKGCMC 3 cut(s) 683, 982, 1051
BseXI GCAGC 4 cut(s) 246, 379, 736, 1023
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 825
BsiEI CGRYCG 1 cut(s) 122
BsiHKAI GWGCWC 4 cut(s) 297, 683, 982, 1051
BsiSI CCGG 5 cut(s) 153, 183, 289, 448, 1112
BslFI GGGAC 3 cut(s) 140, 631, 1100
BslI CCNNNNNNNGG 3 cut(s) 124, 188, 454
BsmAI GTCTC 2 cut(s) 980, 1061
BsmFI GGGAC 3 cut(s) 140, 631, 1100
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 1061
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 4 cut(s) 297, 683, 982, 1051
Bsp143I GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 5 cut(s) 148, 171, 803, 971, 1107
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 3 cut(s) 376, 865, 925
BspDI ATCGAT 1 cut(s) 825
BspLI GGNNCC 3 cut(s) 93, 128, 169
BspPI GGATC 4 cut(s) 321, 811, 821, 1157
BspT104I TTCGAA 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 1061
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 343, 1134
BssECI CCNNGG 5 cut(s) 63, 151, 187, 499, 656
BssMI GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
Bst2UI CCWGG 3 cut(s) 189, 657, 891
Bst4CI ACNGT 3 cut(s) 46, 758, 1097
Bst6I CTCTTC 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 384, 873, 912
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 793, 1013
BstKTI GATC 9 cut(s) 9, 122, 205, 316, 780, 819, 825, 829, 1165
BstMAI GTCTC 2 cut(s) 980, 1061
BstMBI GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 4 cut(s) 104, 389, 678, 977
BstNI CCWGG 3 cut(s) 189, 657, 891
BstNSI RCATGY 2 cut(s) 641, 978
BstSCI CCNGG 7 cut(s) 151, 181, 187, 288, 655, 889, 1111
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 3 cut(s) 683, 982, 1051
BstV1I GCAGC 4 cut(s) 246, 379, 736, 1023
BstXI CCANNNNNNTGG 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 825
BsuRI GGCC 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 825
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 478
BtsCI GGATG 2 cut(s) 793, 1013
BtsIMutI CAGTG 1 cut(s) 754
Cfr13I GGNCC 3 cut(s) 127, 185, 1109
ClaI ATCGAT 1 cut(s) 825
CpoI CGGWCCG 1 cut(s) 1109
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 214
CspI CGGWCCG 1 cut(s) 1109
CviAII CATG 5 cut(s) 310, 406, 638, 669, 975
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 384, 873, 912
DpnI GATC 9 cut(s) 8, 121, 204, 315, 779, 818, 824, 828, 1164
DpnII GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 1061
Eco47I GGWCC 2 cut(s) 127, 1109
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 337, 642
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 3 cut(s) 187, 655, 889
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 5 cut(s) 313, 409, 641, 672, 978
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 3 cut(s) 140, 631, 1100
FatI CATG 5 cut(s) 309, 405, 637, 668, 974
FauNDI CATATG 1 cut(s) 837
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 5 cut(s) 260, 393, 750, 972, 1012
FokI GGATG 2 cut(s) 800, 1020
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 5 cut(s) 260, 393, 750, 972, 1012
FspBI CTAG 3 cut(s) 642, 741, 983
GluI GCNGC 5 cut(s) 260, 393, 750, 972, 1012
HaeIII GGCC 1 cut(s) 186
HapII CCGG 5 cut(s) 153, 183, 289, 448, 1112
HgaI GACGC 1 cut(s) 87
Hin1II CATG 5 cut(s) 313, 409, 641, 672, 978
HinfI GANTC 1 cut(s) 509
HpaII CCGG 5 cut(s) 153, 183, 289, 448, 1112
Hpy166II GTNNAC 4 cut(s) 102, 681, 980, 1049
Hpy188I TCNGA 4 cut(s) 167, 356, 525, 571
Hpy188III TCNNGA 6 cut(s) 506, 557, 820, 830, 1005, 1170
Hpy8I GTNNAC 4 cut(s) 102, 681, 980, 1049
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 184, 617
HpyCH4III ACNGT 3 cut(s) 46, 758, 1097
HpyCH4IV ACGT 2 cut(s) 400, 1037
HpyCH4V TGCA 9 cut(s) 681, 723, 731, 959, 980, 1001, 1011, 1049, 1150
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 389, 678, 977
HpyF3I CTNAG 3 cut(s) 384, 873, 912
HpySE526I ACGT 2 cut(s) 400, 1037
Hsp92II CATG 5 cut(s) 313, 409, 641, 672, 978
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
LmnI GCTCC 3 cut(s) 292, 463, 525
Lsp1109I GCAGC 4 cut(s) 246, 379, 736, 1023
LweI GCATC 3 cut(s) 327, 998, 1010
MaeI CTAG 3 cut(s) 642, 741, 983
MaeII ACGT 2 cut(s) 400, 1037
MaeIII GTNAC 5 cut(s) 50, 661, 794, 895, 1069
MalI GATC 9 cut(s) 8, 121, 204, 315, 779, 818, 824, 828, 1164
MboI GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
MboII GAAGA 7 cut(s) 16, 80, 343, 374, 599, 937, 1006
MhlI GDGCHC 4 cut(s) 297, 683, 982, 1051
MluCI AATT 7 cut(s) 80, 470, 535, 565, 960, 1076, 1140
MmeI TCCRAC 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 627
MslI CAYNNNNRTG 3 cut(s) 308, 1006, 1067
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 5 cut(s) 153, 183, 289, 448, 1112
MspR9I CCNGG 7 cut(s) 153, 183, 189, 290, 657, 891, 1113
MvaI CCWGG 3 cut(s) 189, 657, 891
MwoI GCNNNNNNNGC 4 cut(s) 104, 389, 678, 977
NciI CCSGG 4 cut(s) 153, 183, 290, 1113
NdeI CATATG 1 cut(s) 837
NdeII GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
NlaIII CATG 5 cut(s) 313, 409, 641, 672, 978
NlaIV GGNNCC 3 cut(s) 93, 128, 169
NmuCI GTSAC 3 cut(s) 50, 661, 1069
NspI RCATGY 2 cut(s) 641, 978
NspV TTCGAA 1 cut(s) 177
OliI CACNNNNGTG 1 cut(s) 1067
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 1 cut(s) 509
PfoI TCCNGGA 2 cut(s) 288, 889
PkrI GCNGC 5 cut(s) 261, 394, 751, 973, 1013
Ple19I CGATCG 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 3 cut(s) 187, 655, 889
PspGI CCWGG 3 cut(s) 187, 655, 889
PspN4I GGNNCC 3 cut(s) 93, 128, 169
PspPI GGNCC 3 cut(s) 127, 185, 1109
PspPPI RGGWCCY 1 cut(s) 127
PsrI GAACNNNNNNTAC 2 cut(s) 417, 449
PvuI CGATCG 1 cut(s) 122
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 3 cut(s) 308, 1006, 1067
Rsr2I CGGWCCG 1 cut(s) 1109
RsrII CGGWCCG 1 cut(s) 1109
SacI GAGCTC 1 cut(s) 297
SatI GCNGC 5 cut(s) 260, 393, 750, 972, 1012
Sau3AI GATC 9 cut(s) 6, 119, 202, 313, 777, 816, 822, 826, 1162
Sau96I GGNCC 3 cut(s) 127, 185, 1109
ScrFI CCNGG 7 cut(s) 153, 183, 189, 290, 657, 891, 1113
SduI GDGCHC 4 cut(s) 297, 683, 982, 1051
SfaNI GCATC 3 cut(s) 327, 998, 1010
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 2 cut(s) 127, 1109
SmiMI CAYNNNNRTG 3 cut(s) 308, 1006, 1067
SmlI CTYRAG 3 cut(s) 263, 557, 702
SmoI CTYRAG 3 cut(s) 263, 557, 702
Sse9I AATT 7 cut(s) 80, 470, 535, 565, 960, 1076, 1140
SsiI CCGC 5 cut(s) 148, 171, 803, 971, 1107
SspMI CTAG 3 cut(s) 642, 741, 983
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 7 cut(s) 151, 181, 187, 288, 655, 889, 1111
TaaI ACNGT 3 cut(s) 46, 758, 1097
TaiI ACGT 2 cut(s) 403, 1040
TaqI TCGA 6 cut(s) 122, 132, 177, 297, 321, 825
TaqII GACCGA 1 cut(s) 491
TasI AATT 7 cut(s) 80, 470, 535, 565, 960, 1076, 1140
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 1 cut(s) 509
TscAI CASTG 1 cut(s) 761
TseFI GTSAC 3 cut(s) 50, 661, 1069
TseI GCWGC 4 cut(s) 259, 392, 749, 1011
Tsp45I GTSAC 3 cut(s) 50, 661, 1069
TspDTI ATGAA 3 cut(s) 17, 854, 1147
TspRI CASTG 1 cut(s) 761
VneI GTGCAC 3 cut(s) 679, 978, 1047
VpaK11BI GGWCC 2 cut(s) 127, 1109
XapI RAATTY 2 cut(s) 470, 1076
XceI RCATGY 2 cut(s) 641, 978
XcmI CCANNNNNNNNNTGG 2 cut(s) 226, 601
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 3 cut(s) 642, 741, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.