Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449369.1

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1571

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 677 bp

atggtggagtctactgtccagcagagccgatcgagggacctcgacaagctcctcctccgacccggaaatctcgtcggacccaacttcgaacccggcccagggctcagagaagacctcaaggagtacgtcagagtgttggtggtaggcgctggcggattgggctgtgaattgctcaaggacttggctctgtccggctttcgcgaaatcgaagtcatcgacatggatcgcattgaggtctctaacctcaatcggcagtttctcttcaggcttgaagatgtgggcaagccgaaggctgaggttgctgcaagacgagtaatgcaaagagttgccggggttaacattgttccgcacttctgccggattgaggacaaagagcttgacttttacagcaatttcagcatcattgctctcggtctcgattcgattgaagctcggagctatataaactctgttgcttgtagctttcttgagtacgatgctgatgataaaccccaagaagaaactgtcaaacctatggtagatggtgggactgaaggttttcaaggacatgccagggtcattatgccagggatgactccatgctttgagtgtacaatctggcttttccctcctcaagtgaagttccctttatgcacacttgcagaaacccctagaactgctgctcattgtattgaata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

225

Amino Acids

25.12

Weight (kDa)

4.99

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	201
AciI	CCGC	2 cut(s)	153, 347
AclWI	GGATC	1 cut(s)	231
AcuI	CTGAAG	2 cut(s)	247, 552
AfaI	GTAC	3 cut(s)	125, 473, 592
AfiI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
AgsI	TTSAA	4 cut(s)	272, 428, 542, 674
AjnI	CCWGG	3 cut(s)	97, 551, 565
AluBI	AGCT	5 cut(s)	49, 376, 431, 438, 462
AluI	AGCT	5 cut(s)	49, 376, 431, 438, 462
Alw26I	GTCTC	2 cut(s)	241, 419
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	302, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	37, 77, 95
AsuC2I	CCSGG	3 cut(s)	63, 93, 331
AsuII	TTCGAA	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	37, 77
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	289, 646
BccI	CCATC	1 cut(s)	515
BciT130I	CCWGG	3 cut(s)	99, 553, 567
BcnI	CCSGG	3 cut(s)	63, 93, 331
BcoDI	GTCTC	2 cut(s)	241, 419
BfaI	CTAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	2 cut(s)	303, 660
BlsI	GCNGC	2 cut(s)	304, 661
Bme1390I	CCNGG	6 cut(s)	63, 93, 99, 331, 553, 567
Bme18I	GGWCC	2 cut(s)	37, 77
BmgT120I	GGNCC	3 cut(s)	37, 77, 95
BmiI	GGNNCC	2 cut(s)	38, 79
BmrFI	CCNGG	6 cut(s)	63, 93, 99, 331, 553, 567
BmsI	GCATC	2 cut(s)	408, 466
BpiI	GAAGAC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	4 cut(s)	101, 158, 488, 597
BpuMI	CCSGG	3 cut(s)	63, 93, 331
BsaI	GGTCTC	2 cut(s)	241, 419
BsaJI	CCNNGG	5 cut(s)	97, 98, 330, 552, 566
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	99, 553, 567
BseDI	CCNNGG	5 cut(s)	97, 98, 330, 552, 566
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	118, 285
BseRI	GAGGAG	3 cut(s)	41, 44, 600
BseXI	GCAGC	2 cut(s)	289, 646
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	63, 93, 192, 330, 358
BslFI	GGGAC	2 cut(s)	50, 541
BslI	CCNNNNNNNGG	4 cut(s)	34, 98, 99, 364
BsmAI	GTCTC	2 cut(s)	241, 419
BsmFI	GGGAC	2 cut(s)	50, 541
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	2 cut(s)	241, 419
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	590
Bsp143I	GATC	2 cut(s)	29, 223
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	2 cut(s)	153, 347
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	117, 286
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	38, 79
BspPI	GGATC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	87
BspTNI	GGTCTC	2 cut(s)	241, 419
BsrDI	GCAATG	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	590
BssECI	CCNNGG	5 cut(s)	97, 98, 330, 552, 566
BssMI	GATC	2 cut(s)	29, 223
Bst2UI	CCWGG	3 cut(s)	99, 553, 567
Bst4CI	ACNGT	2 cut(s)	16, 505
Bst6I	CTCTTC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	590
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	151, 284
BstDEI	CTNAG	2 cut(s)	104, 294
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	32, 226
BstMAI	GTCTC	2 cut(s)	241, 419
BstMBI	GATC	2 cut(s)	29, 223
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 299, 396
BstNI	CCWGG	3 cut(s)	99, 553, 567
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	6 cut(s)	61, 91, 97, 329, 551, 565
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	289, 646
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	576
BtuMI	TCGCGA	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	151, 284
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	37, 77, 95
Csp6I	GTAC	3 cut(s)	124, 472, 591
CviAII	CATG	3 cut(s)	220, 548, 579
CviQI	GTAC	3 cut(s)	124, 472, 591
DdeI	CTNAG	2 cut(s)	104, 294
DpnI	GATC	2 cut(s)	31, 225
DpnII	GATC	2 cut(s)	29, 223
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	241, 419
Eco47I	GGWCC	2 cut(s)	37, 77
Eco57I	CTGAAG	2 cut(s)	247, 552
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	97, 551, 565
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	223, 551, 582
FaiI	YATR	8 cut(s)	221, 441, 443, 515, 549, 563, 580, 631
FaqI	GGGAC	2 cut(s)	50, 541
FatI	CATG	3 cut(s)	219, 547, 578
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	303, 660
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	303, 660
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	303, 660
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	5 cut(s)	63, 93, 192, 330, 358
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	223, 551, 582
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	3 cut(s)	8, 419, 574
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	5 cut(s)	63, 93, 192, 330, 358
Hpy166II	GTNNAC	3 cut(s)	12, 337, 591
Hpy188I	TCNGA	5 cut(s)	59, 77, 107, 131, 435
Hpy188III	TCNNGA	3 cut(s)	200, 416, 467
Hpy8I	GTNNAC	3 cut(s)	12, 337, 591
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	283, 527
HpyCH4III	ACNGT	2 cut(s)	16, 505
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	305, 319, 633, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 299, 396
HpyF3I	CTNAG	2 cut(s)	104, 294
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	223, 551, 582
HspAI	GCGC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	29, 223
LmnI	GCTCC	2 cut(s)	54, 435
Lsp1109I	GCAGC	2 cut(s)	289, 646
LweI	GCATC	2 cut(s)	408, 466
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	1 cut(s)	126
MalI	GATC	2 cut(s)	31, 225
MboI	GATC	2 cut(s)	29, 223
MboII	GAAGA	4 cut(s)	122, 253, 284, 509
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	167, 391
MlyI	GAGTC	2 cut(s)	17, 568
MmeI	TCCRAC	2 cut(s)	55, 82
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	5 cut(s)	63, 93, 192, 330, 358
MspR9I	CCNGG	6 cut(s)	63, 93, 99, 331, 553, 567
MvaI	CCWGG	3 cut(s)	99, 553, 567
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	159, 299, 396
NciI	CCSGG	3 cut(s)	63, 93, 331
NdeII	GATC	2 cut(s)	29, 223
NlaIII	CATG	3 cut(s)	223, 551, 582
NlaIV	GGNNCC	2 cut(s)	38, 79
NruI	TCGCGA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	551
NspV	TTCGAA	1 cut(s)	87
PasI	CCCWGGG	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	304, 661
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	2 cut(s)	16, 568
PpsI	GAGTC	2 cut(s)	16, 568
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	3 cut(s)	97, 551, 565
PspGI	CCWGG	3 cut(s)	97, 551, 565
PspN4I	GGNNCC	2 cut(s)	38, 79
PspPI	GGNCC	3 cut(s)	37, 77, 95
PspPPI	RGGWCCY	1 cut(s)	37
PvuI	CGATCG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	3 cut(s)	125, 473, 592
RsaNI	GTAC	3 cut(s)	124, 472, 591
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	303, 660
Sau3AI	GATC	2 cut(s)	29, 223
Sau96I	GGNCC	3 cut(s)	37, 77, 95
SchI	GAGTC	2 cut(s)	17, 568
ScrFI	CCNGG	6 cut(s)	63, 93, 99, 331, 553, 567
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	408, 466
SfuI	TTCGAA	1 cut(s)	87
SinI	GGWCC	2 cut(s)	37, 77
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	4 cut(s)	116, 173, 467, 612
SmoI	CTYRAG	4 cut(s)	116, 173, 467, 612
Sse9I	AATT	2 cut(s)	167, 391
SsiI	CCGC	2 cut(s)	153, 347
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	6 cut(s)	61, 91, 97, 329, 551, 565
TaaI	ACNGT	2 cut(s)	16, 505
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	7 cut(s)	32, 42, 87, 207, 216, 417, 422
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	167, 391
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	2 cut(s)	302, 659
VpaK11BI	GGWCC	2 cut(s)	37, 77
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.