Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

26194727 .. 26195950

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0148800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGCAAGCTGATGCCTCTCTTTTGTCTAGTGTATTTCACATTATGTTCCTCTCCATTGTTTACTAGCTCACTAACACTCCATTCCGATATTCAAGTTCTTCATGTCATGAAGCGTTGCATAGATCTATACTCCATCCCCCCAAATTCCTATCTGAGTAGCTGGGACTTCATACACGATCCATGTGAAACTACAGGCGGGCAGTTTCTCGGAGTCTTATGCAGTTTCCCTCTAGACCAATCCCCAAGCAGAATAACTGCCATTGATCTTGATGGTGCGGGTTATGAGGGGTTCATAACATCAGAAATTGGGAACCTAACCGAGCTCACCTTCATCAATCTAAGTAAAAACAACTTTCGAGGACAAATACCCCAATCCATTTCCAATCTAAAGAAGCTCACTAGACTTTCACTGTCCAACAATTTCTTCACGGGCGGCATTCCCTTGGAATTGAACTCACTCAAAAAGCTAGAATCTCTGGACATTTCGTTCAATAAGCTTTCTGGTATAATACGCTCCAGCATCGGTGGATTACGAGGCTTGACATTCTTAAGCCTGTCCAACAATGGATTCACTGGCAGAATCCCAGACCTCTCGGGGTTATGGCAGTTGAAGACATTAGATCTCAGCAGAAACCAGCTCTTCGGGAGTCTGCCAAATTTTCCAATAAGCTTGAGAACCTTAATTCTGAGCCATAACATACTTTCTGGGAGCCTTACACCTCTAATCACACTCAAAAACCTCAGAGTGCTAGATGCGAGCAACAACAGACTTTCAGGTGCTATAACTAGAGATTTTTTTACCATACCCAAGATGGCTCGACTCAACGTTTCAAATAACCACTTCAAATTGATAGAAATCATTAGATTTGTTGGACACGGAGCACAGCTTCAGGTGCTTGATGCTCAACGAAATCAGCTGCGAGGACATTTGCCTGTAAATTTGGTAAGCCTGCAGAATCTAACAACAATCAACCTTTCCTACAACCAGTTCTTTGGTCATATACCCGAGGAATACGGAGCAAGAGTCGGAGCCTGGAGAACGCTCTACCTAGATCACAACGATTTGCTAGGAAGGCTTCCAGCGGAATTCATTAAAAGACCAGATAGAATCAAGGGTAGTCTTTCAAACAACTGCCTACAGTGTCCGGACAACATTCCATTGTGCACCGGTCGCCAGAGGAAAATATCAGAATGTCAGGAACACACAGACACCAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

407

Amino Acids

45.42

Weight (kDa)

8.95

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	131 - 168	2.2e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	152 - 190	3e-06	Leucine rich repeat
LRR_4	PF12799	181 - 221	3.8e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1147
AciI	CCGC	4 cut(s)	198, 278, 435, 1085
AclI	AACGTT	1 cut(s)	828
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	145, 658, 940, 1088
AcuI	CTGAAG	1 cut(s)	875
AflII	CTTAAG	1 cut(s)	550
AgeI	ACCGGT	1 cut(s)	1169
AgsI	TTSAA	7 cut(s)	95, 454, 493, 613, 834, 847, 1128
AjnI	CCWGG	1 cut(s)	1034
AjuI	GAANNNNNNNTTGG	4 cut(s)	410, 442, 554, 586
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
Alw21I	GWGCWC	3 cut(s)	327, 886, 1169
Alw44I	GTGCAC	1 cut(s)	1165
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	595, 1007
Aor13HI	TCCGGA	1 cut(s)	1147
ApaLI	GTGCAC	1 cut(s)	1165
ApeKI	GCWGC	1 cut(s)	919
ApoI	RAATTY	4 cut(s)	145, 658, 940, 1088
AsiGI	ACCGGT	1 cut(s)	1169
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	2 cut(s)	595, 1007
BaeGI	GKGCMC	1 cut(s)	1169
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	3 cut(s)	327, 886, 1169
BbvI	GCAGC	1 cut(s)	906
BccI	CCATC	3 cut(s)	143, 266, 808
BciT130I	CCWGG	1 cut(s)	1036
BfaI	CTAG	9 cut(s)	29, 66, 233, 402, 470, 752, 789, 1052, 1070
BfmI	CTRYAG	3 cut(s)	192, 953, 1139
BfrI	CTTAAG	1 cut(s)	550
BglII	AGATCT	2 cut(s)	124, 622
BisI	GCNGC	2 cut(s)	436, 920
BlsI	GCNGC	2 cut(s)	437, 921
Bme1390I	CCNGG	1 cut(s)	1036
BmeT110I	CYCGRG	2 cut(s)	595, 1007
BmiI	GGNNCC	3 cut(s)	314, 713, 1033
BmrFI	CCNGG	1 cut(s)	1036
BmsI	GCATC	4 cut(s)	3, 531, 745, 892
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	2 cut(s)	502, 1057
BpuEI	CTTGAG	1 cut(s)	694
BsaBI	GATNNNNATC	1 cut(s)	857
BsaJI	CCNNGG	2 cut(s)	444, 1008
BsaWI	WCCGGW	2 cut(s)	1147, 1169
BsaXI	ACNNNNNCTCC	4 cut(s)	63, 93, 1011, 1041
Bse118I	RCCGGY	1 cut(s)	1169
Bse1I	ACTGG	2 cut(s)	580, 988
Bse8I	GATNNNNATC	1 cut(s)	857
BseAI	TCCGGA	1 cut(s)	1147
BseBI	CCWGG	1 cut(s)	1036
BseDI	CCNNGG	2 cut(s)	444, 1008
BseGI	GGATG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	857
BseMII	CTCAG	4 cut(s)	146, 640, 680, 757
BseNI	ACTGG	2 cut(s)	580, 988
BseSI	GKGCMC	1 cut(s)	1169
BseXI	GCAGC	1 cut(s)	906
BseYI	CCCAGC	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	1174
BshTI	ACCGGT	1 cut(s)	1169
BsiEI	CGRYCG	1 cut(s)	1174
BsiHKAI	GWGCWC	3 cut(s)	327, 886, 1169
BsiHKCI	CYCGRG	2 cut(s)	595, 1007
BsiSI	CCGG	2 cut(s)	1148, 1170
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	438
BsoBI	CYCGRG	2 cut(s)	595, 1007
Bsp1286I	GDGCHC	3 cut(s)	327, 886, 1169
Bsp13I	TCCGGA	1 cut(s)	1147
Bsp143I	GATC	5 cut(s)	124, 178, 265, 622, 1054
BspACI	CCGC	4 cut(s)	198, 278, 435, 1085
BspCNI	CTCAG	4 cut(s)	147, 639, 681, 756
BspEI	TCCGGA	1 cut(s)	1147
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	314, 713, 1033
BspMAI	CTGCAG	1 cut(s)	957
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	647
BspTI	CTTAAG	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	1169
BsrI	ACTGG	2 cut(s)	580, 988
BssAI	RCCGGY	1 cut(s)	1169
BssECI	CCNNGG	2 cut(s)	444, 1008
BssMI	GATC	5 cut(s)	124, 178, 265, 622, 1054
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	1036
Bst4CI	ACNGT	2 cut(s)	414, 1143
Bst6I	CTCTTC	1 cut(s)	647
BstAFI	CTTAAG	1 cut(s)	550
BstC8I	GCNNGC	4 cut(s)	8, 200, 760, 953
BstDEI	CTNAG	5 cut(s)	155, 341, 626, 689, 743
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	5 cut(s)	127, 181, 268, 625, 1057
BstMBI	GATC	5 cut(s)	124, 178, 265, 622, 1054
BstMCI	CGRYCG	1 cut(s)	1174
BstMWI	GCNNNNNNNGC	3 cut(s)	895, 1075, 1173
BstNI	CCWGG	1 cut(s)	1036
BstSCI	CCNGG	1 cut(s)	1034
BstSFI	CTRYAG	3 cut(s)	192, 953, 1139
BstSLI	GKGCMC	1 cut(s)	1169
BstV1I	GCAGC	1 cut(s)	906
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	124, 622
BstXI	CCANNNNNNTGG	1 cut(s)	995
BstYI	RGATCY	2 cut(s)	124, 622
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	410, 573, 1148
Cac8I	GCNNGC	4 cut(s)	8, 200, 760, 953
CciI	TCATGA	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	1169
CspAI	ACCGGT	1 cut(s)	1169
CviAII	CATG	3 cut(s)	104, 109, 183
DdeI	CTNAG	5 cut(s)	155, 341, 626, 689, 743
DpnI	GATC	5 cut(s)	126, 180, 267, 624, 1056
DpnII	GATC	5 cut(s)	124, 178, 265, 622, 1054
Eam1104I	CTCTTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	647
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	875
Eco88I	CYCGRG	2 cut(s)	595, 1007
EcoICRI	GAGCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	1088
EcoRII	CCWGG	1 cut(s)	1034
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	107, 112, 186
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	103, 108, 182
FauI	CCCGC	2 cut(s)	191, 271
Fnu4HI	GCNGC	2 cut(s)	436, 920
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	436, 920
FspBI	CTAG	9 cut(s)	29, 66, 233, 402, 470, 752, 789, 1052, 1070
GluI	GCNGC	2 cut(s)	436, 920
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	2 cut(s)	502, 1057
HapII	CCGG	2 cut(s)	1148, 1170
Hin1II	CATG	3 cut(s)	107, 112, 186
HindIII	AAGCTT	2 cut(s)	497, 670
HinfI	GANTC	9 cut(s)	213, 473, 570, 582, 649, 822, 958, 1026, 1110
HpaII	CCGG	2 cut(s)	1148, 1170
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	63, 1167
Hpy188I	TCNGA	8 cut(s)	88, 156, 212, 304, 690, 746, 1031, 1192
Hpy188III	TCNNGA	7 cut(s)	109, 233, 269, 479, 646, 1148, 1199
Hpy8I	GTNNAC	2 cut(s)	63, 1167
HpyAV	CCTTC	2 cut(s)	340, 1068
HpyCH4III	ACNGT	2 cut(s)	414, 1143
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	4 cut(s)	120, 222, 955, 1167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	895, 1075, 1173
HpyF3I	CTNAG	5 cut(s)	155, 341, 626, 689, 743
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	3 cut(s)	107, 112, 186
Kpn2I	TCCGGA	1 cut(s)	1147
Kzo9I	GATC	5 cut(s)	124, 178, 265, 622, 1054
LguI	GCTCTTC	1 cut(s)	647
LmnI	GCTCC	5 cut(s)	521, 711, 881, 1019, 1031
Lsp1109I	GCAGC	1 cut(s)	906
LweI	GCATC	4 cut(s)	3, 531, 745, 892
MaeI	CTAG	9 cut(s)	29, 66, 233, 402, 470, 752, 789, 1052, 1070
MaeII	ACGT	1 cut(s)	828
MalI	GATC	5 cut(s)	126, 180, 267, 624, 1056
MboI	GATC	5 cut(s)	124, 178, 265, 622, 1054
MboII	GAAGA	4 cut(s)	92, 418, 625, 634
MflI	RGATCY	2 cut(s)	124, 622
MhlI	GDGCHC	3 cut(s)	327, 886, 1169
MluCI	AATT	9 cut(s)	145, 306, 421, 449, 658, 684, 848, 940, 1088
MlyI	GAGTC	4 cut(s)	222, 658, 816, 1035
MmeI	TCCRAC	4 cut(s)	441, 585, 853, 1009
MroI	TCCGGA	1 cut(s)	1147
MseI	TTAA	3 cut(s)	551, 683, 1095
MspA1I	CMGCKG	2 cut(s)	919, 1085
MspCI	CTTAAG	1 cut(s)	550
MspI	CCGG	2 cut(s)	1148, 1170
MspR9I	CCNGG	1 cut(s)	1036
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	1036
MwoI	GCNNNNNNNGC	3 cut(s)	895, 1075, 1173
NdeII	GATC	5 cut(s)	124, 178, 265, 622, 1054
NlaIII	CATG	3 cut(s)	107, 112, 186
NlaIV	GGNNCC	3 cut(s)	314, 713, 1033
PagI	TCATGA	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	647
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	5 cut(s)	473, 570, 582, 958, 1110
PinAI	ACCGGT	1 cut(s)	1169
PkrI	GCNGC	2 cut(s)	437, 921
PleI	GAGTC	4 cut(s)	221, 657, 816, 1034
PpsI	GAGTC	4 cut(s)	221, 657, 816, 1034
Psp124BI	GAGCTC	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	1034
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	1034
PspN4I	GGNNCC	3 cut(s)	314, 713, 1033
PstI	CTGCAG	1 cut(s)	957
PsuI	RGATCY	2 cut(s)	124, 622
PvuII	CAGCTG	1 cut(s)	919
SacI	GAGCTC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	647
SaqAI	TTAA	3 cut(s)	551, 683, 1095
SatI	GCNGC	2 cut(s)	436, 920
Sau3AI	GATC	5 cut(s)	124, 178, 265, 622, 1054
SchI	GAGTC	4 cut(s)	222, 658, 816, 1035
ScrFI	CCNGG	1 cut(s)	1036
SduI	GDGCHC	3 cut(s)	327, 886, 1169
SfaNI	GCATC	4 cut(s)	3, 531, 745, 892
SfcI	CTRYAG	3 cut(s)	192, 953, 1139
SmlI	CTYRAG	2 cut(s)	550, 673
SmoI	CTYRAG	2 cut(s)	550, 673
Sse9I	AATT	9 cut(s)	145, 306, 421, 449, 658, 684, 848, 940, 1088
SsiI	CCGC	4 cut(s)	198, 278, 435, 1085
SspMI	CTAG	9 cut(s)	29, 66, 233, 402, 470, 752, 789, 1052, 1070
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	1034
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	414, 1143
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	2 cut(s)	358, 820
TasI	AATT	9 cut(s)	145, 306, 421, 449, 658, 684, 848, 940, 1088
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	5 cut(s)	473, 570, 582, 958, 1110
Tru1I	TTAA	3 cut(s)	551, 683, 1095
Tru9I	TTAA	3 cut(s)	551, 683, 1095
TscAI	CASTG	3 cut(s)	417, 580, 1148
TseI	GCWGC	1 cut(s)	919
TspDTI	ATGAA	6 cut(s)	92, 125, 160, 283, 322, 1081
TspGWI	ACGGA	2 cut(s)	894, 1032
TspRI	CASTG	3 cut(s)	417, 580, 1148
Vha464I	CTTAAG	1 cut(s)	550
VneI	GTGCAC	1 cut(s)	1165
XapI	RAATTY	4 cut(s)	145, 658, 940, 1088
XbaI	TCTAGA	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811
XspI	CTAG	9 cut(s)	29, 66, 233, 402, 470, 752, 789, 1052, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.