FvH4_1g25030

NEDD8-activating enzyme E1 catalytic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
16821312 .. 16823198
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25030.t1

Sequence Viewer

Length: 1356 bp
ATGGTGGAGTCTAGGGTCCAACAGAGCCGAACCAGGGACCTCGACAAGCTCCTCCTCCGACCCGGGTATCTCGTCGGACCCAACTTCGAACCCGGCGTAGAACTGAGAGAAGACTTGAAAGAGTACGTGAGAGTTTTGGTGGTAGGGGCTGGTGGGCTAGGCTGTGAATTGCTCAAGGACTTGGCTTTGTCTGGCTTTCGAGAAATCGAAGTCATCGACATGGATCGTATTGAGGTCACTAACCTCAATCGTCAATTTCTTTTCAGGCTTGAAGATGTGGGCAAGCCAAAGGCTGAGGTGGCTGCCAAACGAGTCATGCAAAGAGTTGCAGGGGTAAACATAATTCCCCACTTCTGCCGCATTGAGGACAAAGAACTCGACTTCTACAGCAATTTCAGCATCATTGTTCTTGGTCTTGATTCGATCGAAGCTCGTAGCTACATTAACTCTGTTGCTTGTAGCTTTCTTGAGTATGATGATGATGATCAACCGCAAGAAGAAACGGTCAAGCCTATGGTAGATGGTGGGACTGAAGGTTTTCAAGGACATGCTAGGGTTATTATGCCAGGGATGACTCCATGCTTTGAGTGTACACTTTGGCTTTTCCCCCCTCAAGTCAAGTTCCCTTTATGCACACTTGCAGAAACTCCTAGAACTGCTGCTCATTGTATTGAGTATGCTCACCTAATAAAATGGAATGAGGTACATAGTGGAGAGGCTTTTGATCCAGATGACCCCGAACATATGAACATGGTGTACGATGAGGCTTATAAGAGAGCTGAGCTATTTGGTATTCCAGGAGTTACATTGTCTCTCACTCAGGGAGTTGTGAAGAACATCATCCCGGCTATTGCTTCCACAAATGCGATTATATCAGCTGCCTGTGCACTAGAAACATTGAAGATTGCATCTGGATGCAGCACAACTCTATCGAACTATCTAACGTATAACGGTGCAGAAGGTCTCCACACGAAAGTGACCGAGTTTGTGAGGGACAAAGACTGTCTAGTATGTGGCTCAGGTGTTCTTATTGAGCTTGACACCTCAGTTACTTTGCAAACGTTCATTGAGCTACTTGAAGAACACCCTAAATTGCTGTTGTCAAAAGCAAGCATTGCGCATAGAGGGAACAATCTGTACATGCAAGCACCACCTGTACTGGAAGAGATGACCAAATCAAACTTAAGCAAGTCTCTCTATGACCTAATGGGTAAAATTCCCAAGGATGTTGTCCATGCCACTGGTACTACAAACAAGAATGACATAAAGACTTCGGTTCTGAGAAAGTTACGAGTTGTTTTCAAGATAGTTGATGGGATTACGGATATGGAGACTGCAGCAGGTGATCAAGCATGA

Protein Analysis

452

Amino Acids

50.0

Weight (kDa)

5.09

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiF PF00899 32 - 336 6.7e-59 ThiF family
E2_bind PF08825 345 - 433 2.1e-21 E2 binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AarI CACCTGC 1 cut(s) 1331
Acc16I TGCGCA 1 cut(s) 1119
Acc36I ACCTGC 1 cut(s) 1331
AciI CCGC 2 cut(s) 358, 491
AclI AACGTT 1 cut(s) 1061
AclWI GGATC 2 cut(s) 231, 719
AcsI RAATTY 1 cut(s) 1215
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 7 cut(s) 125, 592, 705, 758, 1139, 1158, 1246
AfiI CCNNNNNNNGG 2 cut(s) 34, 364
AflII CTTAAG 1 cut(s) 1183
AgsI TTSAA 6 cut(s) 118, 272, 542, 901, 1079, 1303
AjnI CCWGG 3 cut(s) 32, 565, 796
AleI CACNNNNGTG 1 cut(s) 974
AluBI AGCT 9 cut(s) 49, 431, 438, 462, 779, 784, 878, 1036, 1072
AluI AGCT 9 cut(s) 49, 431, 438, 462, 779, 784, 878, 1036, 1072
Alw21I GWGCWC 1 cut(s) 889
Alw26I GTCTC 4 cut(s) 816, 968, 1197, 1325
Alw44I GTGCAC 1 cut(s) 885
AlwI GGATC 2 cut(s) 231, 719
Ama87I CYCGRG 1 cut(s) 62
ApaLI GTGCAC 1 cut(s) 885
ApeKI GCWGC 5 cut(s) 302, 659, 878, 918, 1337
ApoI RAATTY 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 1120
AspS9I GGNCC 3 cut(s) 16, 37, 77
AsuC2I CCSGG 4 cut(s) 63, 64, 93, 845
AsuHPI GGTGA 2 cut(s) 674, 1355
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 3 cut(s) 16, 37, 77
BaeGI GKGCMC 1 cut(s) 889
BaeI ACNNNNGTAYC 2 cut(s) 50, 83
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 889
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 5 cut(s) 289, 646, 865, 930, 1349
BccI CCATC 2 cut(s) 515, 1307
BciT130I CCWGG 3 cut(s) 34, 567, 798
BclI TGATCA 2 cut(s) 484, 1345
BcnI CCSGG 4 cut(s) 63, 64, 93, 845
BcoDI GTCTC 4 cut(s) 816, 968, 1197, 1325
BfaI CTAG 6 cut(s) 12, 158, 552, 651, 890, 1007
BfmI CTRYAG 2 cut(s) 385, 1335
BfrI CTTAAG 1 cut(s) 1183
BfuAI ACCTGC 1 cut(s) 1331
BisI GCNGC 6 cut(s) 303, 358, 660, 879, 919, 1338
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 6 cut(s) 304, 359, 661, 880, 920, 1339
Bme1390I CCNGG 7 cut(s) 34, 63, 64, 93, 567, 798, 845
Bme18I GGWCC 3 cut(s) 16, 37, 77
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 16, 37, 77
BmiI GGNNCC 3 cut(s) 17, 38, 79
BmrFI CCNGG 7 cut(s) 34, 63, 64, 93, 567, 798, 845
BmsI GCATC 3 cut(s) 408, 905, 917
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 2 cut(s) 294, 1018
Bpu1102I GCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 3 cut(s) 158, 488, 597
BpuMI CCSGG 4 cut(s) 63, 64, 93, 845
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 4 cut(s) 33, 62, 566, 1221
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 364
Bse1I ACTGG 2 cut(s) 1164, 1246
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 3 cut(s) 34, 567, 798
BseDI CCNNGG 4 cut(s) 33, 62, 566, 1221
BseGI GGATG 4 cut(s) 576, 840, 920, 1231
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 34, 364
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 7 cut(s) 95, 285, 771, 833, 1032, 1059, 1271
BseNI ACTGG 2 cut(s) 1164, 1246
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 5 cut(s) 289, 646, 865, 930, 1349
BsgI GTGCAG 1 cut(s) 975
Bsh1285I CGRYCG 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 889
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 63, 93, 845
BslFI GGGAC 3 cut(s) 50, 541, 1007
BslI CCNNNNNNNGG 2 cut(s) 34, 364
BsmAI GTCTC 4 cut(s) 816, 968, 1197, 1325
BsmFI GGGAC 3 cut(s) 50, 541, 1007
Bso31I GGTCTC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 889
Bsp1407I TGTACA 2 cut(s) 590, 1137
Bsp143I GATC 5 cut(s) 223, 423, 484, 724, 1345
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 2 cut(s) 358, 491
BspCNI CTCAG 7 cut(s) 96, 286, 772, 832, 1031, 1058, 1272
BspLI GGNNCC 3 cut(s) 17, 38, 79
BspMAI CTGCAG 1 cut(s) 1339
BspMI ACCTGC 1 cut(s) 1331
BspPI GGATC 2 cut(s) 231, 719
BspT104I TTCGAA 1 cut(s) 87
BspTI CTTAAG 1 cut(s) 1183
BspTNI GGTCTC 1 cut(s) 968
BsrDI GCAATG 1 cut(s) 1113
BsrGI TGTACA 2 cut(s) 590, 1137
BsrI ACTGG 2 cut(s) 1164, 1246
BssECI CCNNGG 4 cut(s) 33, 62, 566, 1221
BssMI GATC 5 cut(s) 223, 423, 484, 724, 1345
BssT1I CCWWGG 1 cut(s) 1221
Bst2UI CCWGG 3 cut(s) 34, 567, 798
Bst4CI ACNGT 3 cut(s) 505, 953, 1004
Bst6I CTCTTC 1 cut(s) 1158
BstAFI CTTAAG 1 cut(s) 1183
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstAUI TGTACA 2 cut(s) 590, 1137
BstBAI YACGTR 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 284, 1111, 1146
BstDEI CTNAG 7 cut(s) 104, 294, 780, 819, 1018, 1045, 1280
BstF5I GGATG 4 cut(s) 576, 840, 920, 1231
BstHHI GCGC 1 cut(s) 1120
BstKTI GATC 5 cut(s) 226, 426, 487, 727, 1348
BstMAI GTCTC 4 cut(s) 816, 968, 1197, 1325
BstMBI GATC 5 cut(s) 223, 423, 484, 724, 1345
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 4 cut(s) 299, 396, 884, 1115
BstNI CCWGG 3 cut(s) 34, 567, 798
BstNSI RCATGY 2 cut(s) 551, 1144
BstSCI CCNGG 7 cut(s) 32, 61, 62, 91, 565, 796, 843
BstSFI CTRYAG 2 cut(s) 385, 1335
BstSLI GKGCMC 1 cut(s) 889
BstV1I GCAGC 5 cut(s) 289, 646, 865, 930, 1349
BstV2I GAAGAC 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 1241
BtsCI GGATG 4 cut(s) 576, 840, 920, 1231
BtsIMutI CAGTG 1 cut(s) 1239
BveI ACCTGC 1 cut(s) 1331
Cac8I GCNNGC 3 cut(s) 284, 1111, 1146
CfoI GCGC 1 cut(s) 1120
Cfr13I GGNCC 3 cut(s) 16, 37, 77
Cfr9I CCCGGG 1 cut(s) 62
Csp6I GTAC 7 cut(s) 124, 591, 704, 757, 1138, 1157, 1245
CviAII CATG 8 cut(s) 220, 316, 548, 579, 751, 1141, 1235, 1353
CviQI GTAC 7 cut(s) 124, 591, 704, 757, 1138, 1157, 1245
DdeI CTNAG 7 cut(s) 104, 294, 780, 819, 1018, 1045, 1280
DpnI GATC 5 cut(s) 225, 425, 486, 726, 1347
DpnII GATC 5 cut(s) 223, 423, 484, 724, 1345
Eam1104I CTCTTC 1 cut(s) 1158
EarI CTCTTC 1 cut(s) 1158
Eco130I CCWWGG 1 cut(s) 1221
Eco31I GGTCTC 1 cut(s) 968
Eco47I GGWCC 3 cut(s) 16, 37, 77
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 32, 565, 796
EcoT14I CCWWGG 1 cut(s) 1221
ErhI CCWWGG 1 cut(s) 1221
FaeI CATG 8 cut(s) 223, 319, 551, 582, 754, 1144, 1238, 1356
FaqI GGGAC 3 cut(s) 50, 541, 1007
FatI CATG 8 cut(s) 219, 315, 547, 578, 750, 1140, 1234, 1352
FauNDI CATATG 1 cut(s) 744
FbaI TGATCA 2 cut(s) 484, 1345
Fnu4HI GCNGC 6 cut(s) 303, 358, 660, 879, 919, 1338
FokI GGATG 4 cut(s) 583, 827, 927, 1238
Fsp4HI GCNGC 6 cut(s) 303, 358, 660, 879, 919, 1338
FspBI CTAG 6 cut(s) 12, 158, 552, 651, 890, 1007
FspI TGCGCA 1 cut(s) 1119
GlaI GCGC 1 cut(s) 1119
GluI GCNGC 6 cut(s) 303, 358, 660, 879, 919, 1338
HapII CCGG 3 cut(s) 63, 93, 845
HhaI GCGC 1 cut(s) 1120
Hin1II CATG 8 cut(s) 223, 319, 551, 582, 754, 1144, 1238, 1356
Hin6I GCGC 1 cut(s) 1118
HinP1I GCGC 1 cut(s) 1118
HinfI GANTC 4 cut(s) 8, 312, 419, 574
HpaII CCGG 3 cut(s) 63, 93, 845
HphI GGTGA 2 cut(s) 674, 1355
Hpy166II GTNNAC 5 cut(s) 337, 591, 593, 757, 887
Hpy188I TCNGA 3 cut(s) 59, 77, 1281
Hpy188III TCNNGA 6 cut(s) 200, 416, 467, 728, 912, 1303
Hpy8I GTNNAC 5 cut(s) 337, 591, 593, 757, 887
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 527, 953
HpyCH4III ACNGT 3 cut(s) 505, 953, 1004
HpyCH4IV ACGT 3 cut(s) 126, 944, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 396, 884, 1115
HpyF3I CTNAG 7 cut(s) 104, 294, 780, 819, 1018, 1045, 1280
HpySE526I ACGT 3 cut(s) 126, 944, 1061
Hsp92II CATG 8 cut(s) 223, 319, 551, 582, 754, 1144, 1238, 1356
HspAI GCGC 1 cut(s) 1118
Ksp22I TGATCA 2 cut(s) 484, 1345
Kzo9I GATC 5 cut(s) 223, 423, 484, 724, 1345
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 5 cut(s) 289, 646, 865, 930, 1349
LweI GCATC 3 cut(s) 408, 905, 917
MaeI CTAG 6 cut(s) 12, 158, 552, 651, 890, 1007
MaeII ACGT 3 cut(s) 126, 944, 1061
MaeIII GTNAC 5 cut(s) 235, 802, 976, 1048, 1287
MalI GATC 5 cut(s) 225, 425, 486, 726, 1347
MboI GATC 5 cut(s) 223, 423, 484, 724, 1345
MboII GAAGA 7 cut(s) 122, 284, 509, 844, 913, 1091, 1175
MhlI GDGCHC 1 cut(s) 889
MluCI AATT 6 cut(s) 167, 254, 342, 391, 1091, 1215
MlyI GAGTC 3 cut(s) 17, 321, 568
MmeI TCCRAC 3 cut(s) 43, 55, 82
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 2 cut(s) 444, 1184
MslI CAYNNNNRTG 3 cut(s) 218, 913, 974
MspA1I CMGCKG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 1183
MspI CCGG 3 cut(s) 63, 93, 845
MspR9I CCNGG 7 cut(s) 34, 63, 64, 93, 567, 798, 845
MvaI CCWGG 3 cut(s) 34, 567, 798
MwoI GCNNNNNNNGC 4 cut(s) 299, 396, 884, 1115
NciI CCSGG 4 cut(s) 63, 64, 93, 845
NdeI CATATG 1 cut(s) 744
NdeII GATC 5 cut(s) 223, 423, 484, 724, 1345
NlaIII CATG 8 cut(s) 223, 319, 551, 582, 754, 1144, 1238, 1356
NlaIV GGNNCC 3 cut(s) 17, 38, 79
NmuCI GTSAC 2 cut(s) 235, 976
NsbI TGCGCA 1 cut(s) 1119
NspI RCATGY 2 cut(s) 551, 1144
NspV TTCGAA 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 974
PaqCI CACCTGC 1 cut(s) 1331
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 213
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 419
PfoI TCCNGGA 1 cut(s) 796
PkrI GCNGC 6 cut(s) 304, 359, 661, 880, 920, 1339
Ple19I CGATCG 1 cut(s) 426
PleI GAGTC 3 cut(s) 16, 320, 568
PpsI GAGTC 3 cut(s) 16, 320, 568
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 37
PsiI TTATAA 1 cut(s) 771
Psp1406I AACGTT 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 3 cut(s) 32, 565, 796
PspGI CCWGG 3 cut(s) 32, 565, 796
PspN4I GGNNCC 3 cut(s) 17, 38, 79
PspPI GGNCC 3 cut(s) 16, 37, 77
PspPPI RGGWCCY 1 cut(s) 37
PsrI GAACNNNNNNTAC 4 cut(s) 740, 772, 1121, 1153
PstI CTGCAG 1 cut(s) 1339
PvuI CGATCG 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 7 cut(s) 125, 592, 705, 758, 1139, 1158, 1246
RsaNI GTAC 7 cut(s) 124, 591, 704, 757, 1138, 1157, 1245
RseI CAYNNNNRTG 3 cut(s) 218, 913, 974
SaqAI TTAA 2 cut(s) 444, 1184
SatI GCNGC 6 cut(s) 303, 358, 660, 879, 919, 1338
Sau3AI GATC 5 cut(s) 223, 423, 484, 724, 1345
Sau96I GGNCC 3 cut(s) 16, 37, 77
SchI GAGTC 3 cut(s) 17, 321, 568
ScrFI CCNGG 7 cut(s) 34, 63, 64, 93, 567, 798, 845
SduI GDGCHC 1 cut(s) 889
SfaNI GCATC 3 cut(s) 408, 905, 917
SfcI CTRYAG 2 cut(s) 385, 1335
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 3 cut(s) 16, 37, 77
SmaI CCCGGG 1 cut(s) 64
SmiMI CAYNNNNRTG 3 cut(s) 218, 913, 974
SmlI CTYRAG 4 cut(s) 173, 467, 612, 1183
SmoI CTYRAG 4 cut(s) 173, 467, 612, 1183
Sse9I AATT 6 cut(s) 167, 254, 342, 391, 1091, 1215
SsiI CCGC 2 cut(s) 358, 491
SspMI CTAG 6 cut(s) 12, 158, 552, 651, 890, 1007
StyD4I CCNGG 7 cut(s) 32, 61, 62, 91, 565, 796, 843
StyI CCWWGG 1 cut(s) 1221
TaaI ACNGT 3 cut(s) 505, 953, 1004
TaiI ACGT 3 cut(s) 129, 947, 1064
TaqI TCGA 9 cut(s) 42, 87, 199, 207, 216, 378, 422, 426, 932
TaqII GACCGA 1 cut(s) 995
TasI AATT 6 cut(s) 167, 254, 342, 391, 1091, 1215
TatI WGTACW 3 cut(s) 590, 1137, 1156
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 2 cut(s) 444, 1184
Tru9I TTAA 2 cut(s) 444, 1184
TscAI CASTG 1 cut(s) 1246
TseFI GTSAC 2 cut(s) 235, 976
TseI GCWGC 5 cut(s) 302, 659, 878, 918, 1337
Tsp45I GTSAC 2 cut(s) 235, 976
TspDTI ATGAA 2 cut(s) 761, 1054
TspGWI ACGGA 1 cut(s) 1337
TspMI CCCGGG 1 cut(s) 62
TspRI CASTG 1 cut(s) 1246
Vha464I CTTAAG 1 cut(s) 1183
VneI GTGCAC 1 cut(s) 885
VpaK11BI GGWCC 3 cut(s) 16, 37, 77
XapI RAATTY 1 cut(s) 1215
XceI RCATGY 2 cut(s) 551, 1144
XmaI CCCGGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 6 cut(s) 12, 158, 552, 651, 890, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.