Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

9196270 .. 9200392

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG111800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCTGCTAGTTGTTTCATTCACTACGGCCTCAGATTCTTCTGCTCAAGGTATAATGGTGCAGAAGGCCTCCACACGAAAGTGACCGAGTTTGTCAGGGACAAAGACTGTGTTGTATGTGGCCCAGGTGTGCTTATTGAGCTGGACACCTCAGTTACTTTGCAAAAGTTCATTGAGCTACTTGAAGAACACCCTAAATTGCTATGGCTTATTCTAAAAAAAAACAAAAAATTTAGGGGTATAAGACAAAATGGCAAGGTGGAGTGCAGTAATACCAAAAGCTTTGAAATAATTATCAAAAGCTTTGAATTCATGCAAAAATTTTGGCGTGGCTGGGACTTTGTTATTTGTCTAAGTGATCAATATCTCCTTCAATGTGGCATTATGATTTGTTCAGCTGCATTTAGTTTCATGCTTAATGGAATGGTCTCATTTTCATTGCAAATGGAGTCCACCATAGTTTCCGAAAGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

158

Amino Acids

18.25

Weight (kDa)

8.42

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	230, 308, 320
AgsI	TTSAA	4 cut(s)	185, 287, 308, 374
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	80
AluBI	AGCT	5 cut(s)	142, 178, 282, 303, 398
AluI	AGCT	5 cut(s)	142, 178, 282, 303, 398
Alw26I	GTCTC	1 cut(s)	433
AoxI	GGCC	4 cut(s)	28, 67, 121, 470
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	3 cut(s)	230, 308, 320
AspS9I	GGNCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	46, 165
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	333
BsgI	GTGCAG	2 cut(s)	81, 286
BshFI	GGCC	4 cut(s)	30, 69, 123, 472
BslFI	GGGAC	2 cut(s)	113, 350
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	2 cut(s)	113, 350
BsnI	GGCC	4 cut(s)	30, 69, 123, 472
Bso31I	GGTCTC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	358
BspANI	GGCC	4 cut(s)	30, 69, 123, 472
BspCNI	CTCAG	2 cut(s)	45, 164
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	32, 151, 353
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	30, 69, 123, 472
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	2 cut(s)	313, 412
DdeI	CTNAG	3 cut(s)	32, 151, 353
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco147I	AGGCCT	2 cut(s)	69, 472
Eco31I	GGTCTC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	316, 415
FaiI	YATR	8 cut(s)	54, 118, 205, 242, 314, 386, 413, 458
FaqI	GGGAC	2 cut(s)	113, 350
FatI	CATG	2 cut(s)	312, 411
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	399
GsaI	CCCAGC	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	30, 69, 123, 472
Hin1II	CATG	2 cut(s)	316, 415
HindIII	AAGCTT	2 cut(s)	280, 301
HinfI	GANTC	2 cut(s)	36, 449
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	2 cut(s)	35, 466
Hpy8I	GTNNAC	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	59, 380
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	6 cut(s)	62, 163, 267, 316, 401, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	32, 151, 353
Hsp92II	CATG	2 cut(s)	316, 415
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	5 cut(s)	82, 111, 128, 138, 319
Lsp1109I	GCAGC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	82, 154
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	31, 197
MluCI	AATT	5 cut(s)	197, 230, 291, 308, 320
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	3 cut(s)	41, 80, 160
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	316, 415
NmuCI	GTSAC	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	80
PceI	AGGCCT	2 cut(s)	69, 472
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	9 cut(s)	53, 130, 144, 152, 180, 261, 284, 305, 400
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	5 cut(s)	197, 230, 291, 308, 320
SseBI	AGGCCT	2 cut(s)	69, 472
SspMI	CTAG	1 cut(s)	9
StuI	AGGCCT	2 cut(s)	69, 472
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	110
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	5 cut(s)	197, 230, 291, 308, 320
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	7, 160, 301, 400, 426
XapI	RAATTY	3 cut(s)	230, 308, 320
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.