Rw4G017890

NEDD8-activating enzyme E1 catalytic

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
40051555 .. 40055259
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017890.1

Sequence Viewer

Length: 1269 bp
ATGGTGGAGTCTACTGTCCAGCAGAGCCGATCGAGGGACCTCGACAAGCTCCTCCTCCGACCCGGAAATCTCGAGTACGTCAGAGTGCTGGTGGTAGGCGCTGGCGGGTTGGGCTGTGAATTGCTCAAGGACTTGGCTCTGTCCGGCTTTCGCGAAATCGAAGTCATCGACATGGATCGCATTGAGGTCTCTAACCTCAATCGGCAGTTTCTCTTCAGGCTTGAAGATGTGGGCAAGCCGAAGGCTGAGGTTGCTGCAAGACGAGTAATGCAAAGAGTTGCTGGGGTTAACATCGTTCCACACTTCTGCCGGATTGAGGACAAAGAGCTTGACTTTTACAGCAATTTCAGCATCATTGCTCTCGGTCTCGATTCGATTGAAGCTCGGAGCTATATAAATTCTGTTGCTTGTAGCTTTCTTGAGTACGATGCTGATGATAAACCCCAAGAAGAAACTGTCAAACCTATGGTAGATGGTGGGACTGAAGGTTTTCAAGGACATGCCAGGGTCATTATGCCAGGGATGACTCCATTGAAGTTCCCTTTATGCACACTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGGATGAGGTACATAGTGGAGAGGCTTTTGATCCAGATGACCCTGAACATATGAAGTGGGTGTACGATGAGGCTAACAAAAGAGCTGAGCTGTTTGGTATTCCAGGAGTTACATTGTCTCTCACTCAGGGCGTTGTGAAAAACATCATACCGGCTATTGCTTCCACAAATGCGATTATATCAGCGGCCTGTGCACTAGAAACATTGAAGATTGCATCTGGATGCAGTAAAACTCTATCGAATTATCTAACGTATAATGGTGCAGAAGGTCTCCACACGAAAGTGACCGAGTTTGTTAGGGACAAAGACTGTCTTGTATGTGGCCCTGGTGTTCTTATTGAGCTGGACACCTCAATTACTTTGCAAAAGTTCATTGAGCTACTTGAAGAACACCCTAAATTACTGTTGTCAAAAGCAAGCATTGCACATAGAGGGAAGAATTTGTACATGCAAGCGCCACCTGTACTGGAAGAGATGACCAGATCAAACTTAAGCAAGTCTCTCTATGATCTAATGGGTAAAATTCCCAAAGATGTTGTCCATGCGACTGGTACTACCAACAAGAATGACAAAAAGACTTCAGTTCTGAGGAAGTTACGAGTTGTCTTCAAGGGAGTTGATGAGATTACAGATATGGAGACTGCAGCAGGTGGGGCATGA

Protein Analysis

422

Amino Acids

46.57

Weight (kDa)

5.59

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiF PF00899 24 - 308 4.1e-52 ThiF family
E2_bind PF08825 317 - 406 2.8e-23 E2 binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1247
Acc36I ACCTGC 1 cut(s) 1247
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 105, 794
AclWI GGATC 2 cut(s) 183, 635
AcsI RAATTY 3 cut(s) 397, 1048, 1131
AcuI CTGAAG 3 cut(s) 199, 504, 1173
AfaI GTAC 7 cut(s) 77, 425, 621, 674, 1055, 1074, 1162
AfiI CCNNNNNNNGG 2 cut(s) 34, 316
AflII CTTAAG 1 cut(s) 1099
AgsI TTSAA 8 cut(s) 224, 380, 494, 535, 590, 817, 995, 1219
AjnI CCWGG 4 cut(s) 503, 517, 712, 934
AleI CACNNNNGTG 1 cut(s) 890
AluBI AGCT 9 cut(s) 49, 328, 383, 390, 414, 695, 700, 952, 988
AluI AGCT 9 cut(s) 49, 328, 383, 390, 414, 695, 700, 952, 988
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 6 cut(s) 193, 371, 732, 884, 1113, 1241
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 2 cut(s) 183, 635
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 795, 931
ApaLI GTGCAC 1 cut(s) 801
ApeKI GCWGC 3 cut(s) 254, 575, 1253
ApoI RAATTY 3 cut(s) 397, 1048, 1131
ArsI GACNNNNNNTTYG 4 cut(s) 147, 179, 1131, 1163
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 2 cut(s) 101, 1066
AspS9I GGNCC 2 cut(s) 37, 932
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 805
BarI GAAGNNNNNNTAC 4 cut(s) 656, 688, 1037, 1069
BbsI GAAGAC 1 cut(s) 1207
Bbv12I GWGCWC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 241, 562, 1265
BccI CCATC 1 cut(s) 467
BciT130I CCWGG 4 cut(s) 505, 519, 714, 936
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 6 cut(s) 193, 371, 732, 884, 1113, 1241
BfaI CTAG 2 cut(s) 567, 806
BfmI CTRYAG 1 cut(s) 1251
BfoI RGCGCY 2 cut(s) 102, 1067
BfrI CTTAAG 1 cut(s) 1099
BfuAI ACCTGC 1 cut(s) 1247
BisI GCNGC 4 cut(s) 255, 576, 795, 1254
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 4 cut(s) 256, 577, 796, 1255
Bme1390I CCNGG 5 cut(s) 63, 505, 519, 714, 936
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 37, 932
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 5 cut(s) 63, 505, 519, 714, 936
BmsI GCATC 4 cut(s) 360, 418, 821, 833
BpiI GAAGAC 1 cut(s) 1207
Bpu10I CCTNAGC 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 110, 440
BpuMI CCSGG 1 cut(s) 63
BsaI GGTCTC 3 cut(s) 193, 371, 884
BsaJI CCNNGG 3 cut(s) 504, 518, 934
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 316
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 1080, 1162
Bse3DI GCAATG 2 cut(s) 354, 1029
BseBI CCWGG 4 cut(s) 505, 519, 714, 936
BseDI CCNNGG 3 cut(s) 504, 518, 934
BseGI GGATG 3 cut(s) 528, 619, 836
BseLI CCNNNNNNNGG 2 cut(s) 34, 316
BseMI GCAATG 2 cut(s) 354, 1029
BseMII CTCAG 4 cut(s) 237, 687, 749, 1187
BseNI ACTGG 2 cut(s) 1080, 1162
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 3 cut(s) 241, 562, 1265
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 797, 933
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 805
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 4 cut(s) 63, 144, 310, 761
BslFI GGGAC 3 cut(s) 50, 493, 923
BslI CCNNNNNNNGG 2 cut(s) 34, 316
BsmAI GTCTC 6 cut(s) 193, 371, 732, 884, 1113, 1241
BsmFI GGGAC 3 cut(s) 50, 493, 923
BsnI GGCC 2 cut(s) 797, 933
Bso31I GGTCTC 3 cut(s) 193, 371, 884
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 805
Bsp1407I TGTACA 1 cut(s) 1053
Bsp143I GATC 5 cut(s) 29, 175, 640, 1091, 1117
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 2 cut(s) 105, 794
BspANI GGCC 2 cut(s) 797, 933
BspCNI CTCAG 4 cut(s) 238, 688, 748, 1188
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 1255
BspMI ACCTGC 1 cut(s) 1247
BspPI GGATC 2 cut(s) 183, 635
BspTI CTTAAG 1 cut(s) 1099
BspTNI GGTCTC 3 cut(s) 193, 371, 884
BsrDI GCAATG 2 cut(s) 354, 1029
BsrFI RCCGGY 1 cut(s) 760
BsrGI TGTACA 1 cut(s) 1053
BsrI ACTGG 2 cut(s) 1080, 1162
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 3 cut(s) 504, 518, 934
BssMI GATC 5 cut(s) 29, 175, 640, 1091, 1117
Bst2UI CCWGG 4 cut(s) 505, 519, 714, 936
Bst4CI ACNGT 4 cut(s) 16, 457, 920, 1014
Bst6I CTCTTC 2 cut(s) 218, 1074
BstAFI CTTAAG 1 cut(s) 1099
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstAUI TGTACA 1 cut(s) 1053
BstC8I GCNNGC 4 cut(s) 103, 236, 1027, 1062
BstDEI CTNAG 4 cut(s) 246, 696, 735, 1196
BstF5I GGATG 3 cut(s) 528, 619, 836
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 2 cut(s) 102, 1067
BstHHI GCGC 2 cut(s) 101, 1066
BstKTI GATC 5 cut(s) 32, 178, 643, 1094, 1120
BstMAI GTCTC 6 cut(s) 193, 371, 732, 884, 1113, 1241
BstMBI GATC 5 cut(s) 29, 175, 640, 1091, 1117
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 6 cut(s) 111, 251, 348, 800, 1031, 1262
BstNI CCWGG 4 cut(s) 505, 519, 714, 936
BstNSI RCATGY 2 cut(s) 503, 1060
BstSCI CCNGG 5 cut(s) 61, 503, 517, 712, 934
BstSFI CTRYAG 1 cut(s) 1251
BstSLI GKGCMC 1 cut(s) 805
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 241, 562, 1265
BstV2I GAAGAC 1 cut(s) 1207
BstXI CCANNNNNNTGG 1 cut(s) 1157
BsuRI GGCC 2 cut(s) 797, 933
BtsCI GGATG 3 cut(s) 528, 619, 836
BtuMI TCGCGA 1 cut(s) 153
BveI ACCTGC 1 cut(s) 1247
Cac8I GCNNGC 4 cut(s) 103, 236, 1027, 1062
CfoI GCGC 2 cut(s) 101, 1066
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 37, 932
Csp6I GTAC 7 cut(s) 76, 424, 620, 673, 1054, 1073, 1161
CviAII CATG 5 cut(s) 172, 500, 1057, 1151, 1266
CviQI GTAC 7 cut(s) 76, 424, 620, 673, 1054, 1073, 1161
DdeI CTNAG 4 cut(s) 246, 696, 735, 1196
DpnI GATC 5 cut(s) 31, 177, 642, 1093, 1119
DpnII GATC 5 cut(s) 29, 175, 640, 1091, 1117
Eam1104I CTCTTC 2 cut(s) 218, 1074
EarI CTCTTC 2 cut(s) 218, 1074
Eco31I GGTCTC 3 cut(s) 193, 371, 884
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 3 cut(s) 199, 504, 1173
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 4 cut(s) 503, 517, 712, 934
FaeI CATG 5 cut(s) 175, 503, 1060, 1154, 1269
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 3 cut(s) 50, 493, 923
FatI CATG 5 cut(s) 171, 499, 1056, 1150, 1265
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 660
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 4 cut(s) 255, 576, 795, 1254
FokI GGATG 3 cut(s) 535, 626, 843
Fsp4HI GCNGC 4 cut(s) 255, 576, 795, 1254
FspBI CTAG 2 cut(s) 567, 806
GlaI GCGC 2 cut(s) 100, 1065
GluI GCNGC 4 cut(s) 255, 576, 795, 1254
GsaI CCCAGC 1 cut(s) 285
HaeII RGCGCY 2 cut(s) 102, 1067
HaeIII GGCC 2 cut(s) 797, 933
HapII CCGG 4 cut(s) 63, 144, 310, 761
HhaI GCGC 2 cut(s) 101, 1066
Hin1II CATG 5 cut(s) 175, 503, 1060, 1154, 1269
Hin6I GCGC 2 cut(s) 99, 1064
HinP1I GCGC 2 cut(s) 99, 1064
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 3 cut(s) 8, 371, 526
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 4 cut(s) 63, 144, 310, 761
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 4 cut(s) 12, 289, 673, 803
Hpy188I TCNGA 4 cut(s) 59, 83, 387, 1197
Hpy188III TCNNGA 6 cut(s) 71, 152, 368, 419, 644, 828
Hpy8I GTNNAC 4 cut(s) 12, 289, 673, 803
HpyAV CCTTC 3 cut(s) 235, 479, 869
HpyCH4III ACNGT 4 cut(s) 16, 457, 920, 1014
HpyCH4IV ACGT 2 cut(s) 78, 860
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 251, 348, 800, 1031, 1262
HpyF3I CTNAG 4 cut(s) 246, 696, 735, 1196
HpySE526I ACGT 2 cut(s) 78, 860
Hsp92II CATG 5 cut(s) 175, 503, 1060, 1154, 1269
HspAI GCGC 2 cut(s) 99, 1064
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 5 cut(s) 29, 175, 640, 1091, 1117
LmnI GCTCC 2 cut(s) 54, 387
Lsp1109I GCAGC 3 cut(s) 241, 562, 1265
LweI GCATC 4 cut(s) 360, 418, 821, 833
MaeI CTAG 2 cut(s) 567, 806
MaeII ACGT 2 cut(s) 78, 860
MaeIII GTNAC 3 cut(s) 718, 892, 1203
MalI GATC 5 cut(s) 31, 177, 642, 1093, 1119
MboI GATC 5 cut(s) 29, 175, 640, 1091, 1117
MboII GAAGA 8 cut(s) 205, 236, 461, 829, 1007, 1057, 1091, 1207
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 9 cut(s) 119, 343, 397, 603, 850, 963, 1007, 1048, 1131
MlyI GAGTC 2 cut(s) 17, 520
MmeI TCCRAC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 3 cut(s) 288, 606, 1100
MslI CAYNNNNRTG 3 cut(s) 170, 829, 890
MspA1I CMGCKG 1 cut(s) 794
MspCI CTTAAG 1 cut(s) 1099
MspI CCGG 4 cut(s) 63, 144, 310, 761
MspR9I CCNGG 5 cut(s) 63, 505, 519, 714, 936
MvaI CCWGG 4 cut(s) 505, 519, 714, 936
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 111, 251, 348, 800, 1031, 1262
NciI CCSGG 1 cut(s) 63
NdeI CATATG 1 cut(s) 660
NdeII GATC 5 cut(s) 29, 175, 640, 1091, 1117
NlaIII CATG 5 cut(s) 175, 503, 1060, 1154, 1269
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 892
NruI TCGCGA 1 cut(s) 153
NspI RCATGY 2 cut(s) 503, 1060
OliI CACNNNNGTG 1 cut(s) 890
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 1247
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 712
PkrI GCNGC 4 cut(s) 256, 577, 796, 1255
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 2 cut(s) 16, 520
PpsI GAGTC 2 cut(s) 16, 520
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 4 cut(s) 503, 517, 712, 934
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 4 cut(s) 503, 517, 712, 934
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 2 cut(s) 37, 932
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 1 cut(s) 1255
PvuI CGATCG 1 cut(s) 32
RruI TCGCGA 1 cut(s) 153
RsaI GTAC 7 cut(s) 77, 425, 621, 674, 1055, 1074, 1162
RsaNI GTAC 7 cut(s) 76, 424, 620, 673, 1054, 1073, 1161
RseI CAYNNNNRTG 3 cut(s) 170, 829, 890
SaqAI TTAA 3 cut(s) 288, 606, 1100
SatI GCNGC 4 cut(s) 255, 576, 795, 1254
Sau3AI GATC 5 cut(s) 29, 175, 640, 1091, 1117
Sau96I GGNCC 2 cut(s) 37, 932
SchI GAGTC 2 cut(s) 17, 520
ScrFI CCNGG 5 cut(s) 63, 505, 519, 714, 936
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 4 cut(s) 360, 418, 821, 833
SfcI CTRYAG 1 cut(s) 1251
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 3 cut(s) 170, 829, 890
SmlI CTYRAG 4 cut(s) 71, 125, 419, 1099
SmoI CTYRAG 4 cut(s) 71, 125, 419, 1099
Sse9I AATT 9 cut(s) 119, 343, 397, 603, 850, 963, 1007, 1048, 1131
SsiI CCGC 2 cut(s) 105, 794
SspMI CTAG 2 cut(s) 567, 806
StyD4I CCNGG 5 cut(s) 61, 503, 517, 712, 934
TaaI ACNGT 4 cut(s) 16, 457, 920, 1014
TaiI ACGT 2 cut(s) 81, 863
TaqI TCGA 8 cut(s) 32, 42, 72, 159, 168, 369, 374, 848
TaqII GACCGA 2 cut(s) 353, 911
TasI AATT 9 cut(s) 119, 343, 397, 603, 850, 963, 1007, 1048, 1131
TatI WGTACW 2 cut(s) 1053, 1072
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 288, 606, 1100
Tru9I TTAA 3 cut(s) 288, 606, 1100
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 3 cut(s) 254, 575, 1253
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 2 cut(s) 677, 970
Vha464I CTTAAG 1 cut(s) 1099
VneI GTGCAC 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 3 cut(s) 397, 1048, 1131
XceI RCATGY 2 cut(s) 503, 1060
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 567, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.