NEDD8-activating enzyme E1 catalytic
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 953 |
| AccB1I | GGYRCC | 2 cut(s) | 4, 1150 |
| AccI | GTMKAC | 1 cut(s) | 14 |
| AccII | CGCG | 1 cut(s) | 63 |
| AciI | CCGC | 6 cut(s) | 18, 61, 714, 882, 1017, 1338 |
| AclWI | GGATC | 5 cut(s) | 27, 234, 722, 731, 1328 |
| AcsI | RAATTY | 3 cut(s) | 383, 448, 986 |
| AcuI | CTGAAG | 2 cut(s) | 250, 555 |
| AcyI | GRCGYC | 1 cut(s) | 1151 |
| AfaI | GTAC | 6 cut(s) | 128, 708, 1142, 1161, 1236, 1249 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 37, 101, 367 |
| AflIII | ACRYGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 7 cut(s) | 275, 383, 545, 677, 904, 1013, 1037 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1278 |
| AjnI | CCWGG | 4 cut(s) | 35, 568, 799, 1021 |
| AleI | CACNNNNGTG | 1 cut(s) | 977 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1011, 1043 |
| AluBI | AGCT | 9 cut(s) | 52, 172, 208, 379, 441, 782, 787, 851, 1207 |
| AluI | AGCT | 9 cut(s) | 52, 172, 208, 379, 441, 782, 787, 851, 1207 |
| Alw21I | GWGCWC | 3 cut(s) | 210, 596, 892 |
| Alw26I | GTCTC | 2 cut(s) | 890, 971 |
| Alw44I | GTGCAC | 2 cut(s) | 592, 888 |
| AlwI | GGATC | 5 cut(s) | 27, 234, 722, 731, 1328 |
| AoxI | GGCC | 1 cut(s) | 97 |
| ApaLI | GTGCAC | 2 cut(s) | 592, 888 |
| ApeKI | GCWGC | 6 cut(s) | 165, 172, 305, 662, 921, 959 |
| ApoI | RAATTY | 3 cut(s) | 383, 448, 986 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AspLEI | GCGC | 2 cut(s) | 65, 1153 |
| AspS9I | GGNCC | 4 cut(s) | 40, 80, 98, 1019 |
| AsuC2I | CCSGG | 2 cut(s) | 96, 102 |
| AsuII | TTCGAA | 2 cut(s) | 90, 1305 |
| AvaII | GGWCC | 3 cut(s) | 40, 80, 1019 |
| BaeGI | GKGCMC | 2 cut(s) | 596, 892 |
| BanI | GGYRCC | 2 cut(s) | 4, 1150 |
| BanII | GRGCYC | 1 cut(s) | 210 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1124, 1156 |
| BbsI | GAAGAC | 1 cut(s) | 30 |
| Bbv12I | GWGCWC | 3 cut(s) | 210, 596, 892 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BbvI | GCAGC | 6 cut(s) | 152, 159, 292, 649, 933, 971 |
| BccI | CCATC | 4 cut(s) | 515, 518, 605, 1310 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 58, 92 |
| BciT130I | CCWGG | 4 cut(s) | 37, 570, 801, 1023 |
| BcnI | CCSGG | 2 cut(s) | 96, 102 |
| BcoDI | GTCTC | 2 cut(s) | 890, 971 |
| BfaI | CTAG | 3 cut(s) | 555, 893, 1079 |
| BfoI | RGCGCY | 1 cut(s) | 1154 |
| BfuAI | ACCTGC | 1 cut(s) | 953 |
| BisI | GCNGC | 7 cut(s) | 166, 173, 306, 663, 882, 922, 960 |
| BlpI | GCTNAGC | 1 cut(s) | 783 |
| BlsI | GCNGC | 7 cut(s) | 167, 174, 307, 664, 883, 923, 961 |
| Bme1390I | CCNGG | 6 cut(s) | 37, 96, 102, 570, 801, 1023 |
| Bme18I | GGWCC | 3 cut(s) | 40, 80, 1019 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1278 |
| BmgT120I | GGNCC | 4 cut(s) | 40, 80, 98, 1019 |
| BmiI | GGNNCC | 5 cut(s) | 6, 41, 82, 100, 1152 |
| BmrFI | CCNGG | 6 cut(s) | 37, 96, 102, 570, 801, 1023 |
| BmsI | GCATC | 3 cut(s) | 908, 920, 1125 |
| BpiI | GAAGAC | 1 cut(s) | 30 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 102, 134 |
| Bpu10I | CCTNAGC | 3 cut(s) | 297, 1187, 1224 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 783 |
| Bpu14I | TTCGAA | 2 cut(s) | 90, 1305 |
| BpuEI | CTTGAG | 3 cut(s) | 161, 491, 600 |
| BpuMI | CCSGG | 2 cut(s) | 96, 102 |
| Bsa29I | ATCGAT | 1 cut(s) | 1071 |
| BsaHI | GRCGYC | 1 cut(s) | 1151 |
| BsaI | GGTCTC | 1 cut(s) | 971 |
| BsaJI | CCNNGG | 4 cut(s) | 36, 100, 412, 569 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 37, 101, 367 |
| Bse118I | RCCGGY | 1 cut(s) | 65 |
| Bse1I | ACTGG | 4 cut(s) | 256, 1044, 1167, 1249 |
| BseBI | CCWGG | 4 cut(s) | 37, 570, 801, 1023 |
| BseCI | ATCGAT | 1 cut(s) | 1071 |
| BseDI | CCNNGG | 4 cut(s) | 36, 100, 412, 569 |
| BseGI | GGATG | 3 cut(s) | 706, 923, 1234 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 37, 101, 367 |
| BseMII | CTCAG | 4 cut(s) | 288, 774, 836, 1274 |
| BseNI | ACTGG | 4 cut(s) | 256, 1044, 1167, 1249 |
| BseRI | GAGGAG | 1 cut(s) | 47 |
| BseSI | GKGCMC | 2 cut(s) | 596, 892 |
| BseXI | GCAGC | 6 cut(s) | 152, 159, 292, 649, 933, 971 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| BsgI | GTGCAG | 1 cut(s) | 978 |
| Bsh1236I | CGCG | 1 cut(s) | 63 |
| BshFI | GGCC | 1 cut(s) | 99 |
| BshNI | GGYRCC | 2 cut(s) | 4, 1150 |
| BshVI | ATCGAT | 1 cut(s) | 1071 |
| BsiHKAI | GWGCWC | 3 cut(s) | 210, 596, 892 |
| BsiSI | CCGG | 4 cut(s) | 66, 96, 102, 361 |
| BslFI | GGGAC | 3 cut(s) | 53, 544, 1010 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 37, 101, 367 |
| BsmAI | GTCTC | 2 cut(s) | 890, 971 |
| BsmFI | GGGAC | 3 cut(s) | 53, 544, 1010 |
| BsmI | GAATGC | 1 cut(s) | 1019 |
| BsnI | GGCC | 1 cut(s) | 99 |
| Bso31I | GGTCTC | 1 cut(s) | 971 |
| Bsp119I | TTCGAA | 2 cut(s) | 90, 1305 |
| Bsp1286I | GDGCHC | 3 cut(s) | 210, 596, 892 |
| Bsp1407I | TGTACA | 2 cut(s) | 1140, 1234 |
| Bsp143I | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 783 |
| BspACI | CCGC | 6 cut(s) | 18, 61, 714, 882, 1017, 1338 |
| BspANI | GGCC | 1 cut(s) | 99 |
| BspCNI | CTCAG | 4 cut(s) | 289, 775, 835, 1275 |
| BspDI | ATCGAT | 1 cut(s) | 1071 |
| BspFNI | CGCG | 1 cut(s) | 63 |
| BspLI | GGNNCC | 5 cut(s) | 6, 41, 82, 100, 1152 |
| BspMI | ACCTGC | 1 cut(s) | 953 |
| BspPI | GGATC | 5 cut(s) | 27, 234, 722, 731, 1328 |
| BspT104I | TTCGAA | 2 cut(s) | 90, 1305 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 1150 |
| BspTNI | GGTCTC | 1 cut(s) | 971 |
| BsrFI | RCCGGY | 1 cut(s) | 65 |
| BsrGI | TGTACA | 2 cut(s) | 1140, 1234 |
| BsrI | ACTGG | 4 cut(s) | 256, 1044, 1167, 1249 |
| BssAI | RCCGGY | 1 cut(s) | 65 |
| BssECI | CCNNGG | 4 cut(s) | 36, 100, 412, 569 |
| BssMI | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| BssNI | GRCGYC | 1 cut(s) | 1151 |
| Bst2UI | CCWGG | 4 cut(s) | 37, 570, 801, 1023 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 1007 |
| Bst6I | CTCTTC | 2 cut(s) | 269, 1161 |
| BstACI | GRCGYC | 1 cut(s) | 1151 |
| BstAUI | TGTACA | 2 cut(s) | 1140, 1234 |
| BstBI | TTCGAA | 2 cut(s) | 90, 1305 |
| BstC8I | GCNNGC | 6 cut(s) | 67, 170, 287, 1114, 1149, 1342 |
| BstDEI | CTNAG | 6 cut(s) | 297, 783, 822, 1187, 1224, 1283 |
| BstF5I | GGATG | 3 cut(s) | 706, 923, 1234 |
| BstFNI | CGCG | 1 cut(s) | 63 |
| BstH2I | RGCGCY | 1 cut(s) | 1154 |
| BstHHI | GCGC | 2 cut(s) | 65, 1153 |
| BstKTI | GATC | 7 cut(s) | 35, 229, 730, 739, 1075, 1181, 1323 |
| BstMAI | GTCTC | 2 cut(s) | 890, 971 |
| BstMBI | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 302, 591, 887, 1346 |
| BstNI | CCWGG | 4 cut(s) | 37, 570, 801, 1023 |
| BstNSI | RCATGY | 4 cut(s) | 554, 888, 1147, 1241 |
| BstSCI | CCNGG | 6 cut(s) | 35, 94, 100, 568, 799, 1021 |
| BstSLI | GKGCMC | 2 cut(s) | 596, 892 |
| BstUI | CGCG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 6 cut(s) | 152, 159, 292, 649, 933, 971 |
| BstV2I | GAAGAC | 1 cut(s) | 30 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| Bsu15I | ATCGAT | 1 cut(s) | 1071 |
| BsuRI | GGCC | 1 cut(s) | 99 |
| BsuTUI | ATCGAT | 1 cut(s) | 1071 |
| BtsCI | GGATG | 3 cut(s) | 706, 923, 1234 |
| BveI | ACCTGC | 1 cut(s) | 953 |
| Cac8I | GCNNGC | 6 cut(s) | 67, 170, 287, 1114, 1149, 1342 |
| CfoI | GCGC | 2 cut(s) | 65, 1153 |
| Cfr10I | RCCGGY | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 4 cut(s) | 40, 80, 98, 1019 |
| ClaI | ATCGAT | 1 cut(s) | 1071 |
| CsiI | ACCWGGT | 1 cut(s) | 1021 |
| Csp6I | GTAC | 6 cut(s) | 127, 707, 1141, 1160, 1235, 1248 |
| CviAII | CATG | 8 cut(s) | 223, 319, 551, 582, 885, 1144, 1238, 1350 |
| CviQI | GTAC | 6 cut(s) | 127, 707, 1141, 1160, 1235, 1248 |
| DdeI | CTNAG | 6 cut(s) | 297, 783, 822, 1187, 1224, 1283 |
| DinI | GGCGCC | 1 cut(s) | 1152 |
| DpnI | GATC | 7 cut(s) | 34, 228, 729, 738, 1074, 1180, 1322 |
| DpnII | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1278 |
| Eam1104I | CTCTTC | 2 cut(s) | 269, 1161 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1278 |
| EarI | CTCTTC | 2 cut(s) | 269, 1161 |
| Ecl136II | GAGCTC | 1 cut(s) | 208 |
| Eco24I | GRGCYC | 1 cut(s) | 210 |
| Eco31I | GGTCTC | 1 cut(s) | 971 |
| Eco47I | GGWCC | 3 cut(s) | 40, 80, 1019 |
| Eco53kI | GAGCTC | 1 cut(s) | 208 |
| Eco57I | CTGAAG | 2 cut(s) | 250, 555 |
| EcoICRI | GAGCTC | 1 cut(s) | 208 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoRII | CCWGG | 4 cut(s) | 35, 568, 799, 1021 |
| EcoT38I | GRGCYC | 1 cut(s) | 210 |
| EgeI | GGCGCC | 1 cut(s) | 1152 |
| EheI | GGCGCC | 1 cut(s) | 1152 |
| FaeI | CATG | 8 cut(s) | 226, 322, 554, 585, 888, 1147, 1241, 1353 |
| FaqI | GGGAC | 3 cut(s) | 53, 544, 1010 |
| FatI | CATG | 8 cut(s) | 222, 318, 550, 581, 884, 1143, 1237, 1349 |
| FauNDI | CATATG | 1 cut(s) | 747 |
| FblI | GTMKAC | 1 cut(s) | 14 |
| Fnu4HI | GCNGC | 7 cut(s) | 166, 173, 306, 663, 882, 922, 960 |
| FokI | GGATG | 3 cut(s) | 713, 930, 1241 |
| FriOI | GRGCYC | 1 cut(s) | 210 |
| Fsp4HI | GCNGC | 7 cut(s) | 166, 173, 306, 663, 882, 922, 960 |
| FspBI | CTAG | 3 cut(s) | 555, 893, 1079 |
| GlaI | GCGC | 2 cut(s) | 64, 1152 |
| GluI | GCNGC | 7 cut(s) | 166, 173, 306, 663, 882, 922, 960 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| HaeII | RGCGCY | 1 cut(s) | 1154 |
| HaeIII | GGCC | 1 cut(s) | 99 |
| HapII | CCGG | 4 cut(s) | 66, 96, 102, 361 |
| HhaI | GCGC | 2 cut(s) | 65, 1153 |
| Hin1I | GRCGYC | 1 cut(s) | 1151 |
| Hin1II | CATG | 8 cut(s) | 226, 322, 554, 585, 888, 1147, 1241, 1353 |
| Hin6I | GCGC | 2 cut(s) | 63, 1151 |
| HinP1I | GCGC | 2 cut(s) | 63, 1151 |
| HinfI | GANTC | 3 cut(s) | 422, 804, 1135 |
| HpaII | CCGG | 4 cut(s) | 66, 96, 102, 361 |
| Hpy166II | GTNNAC | 3 cut(s) | 15, 594, 890 |
| Hpy188I | TCNGA | 5 cut(s) | 80, 269, 438, 484, 1284 |
| Hpy188III | TCNNGA | 6 cut(s) | 203, 419, 470, 731, 740, 915 |
| Hpy8I | GTNNAC | 3 cut(s) | 15, 594, 890 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyAV | CCTTC | 4 cut(s) | 97, 530, 1202, 1301 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 1007 |
| HpyCH4IV | ACGT | 2 cut(s) | 313, 947 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 302, 591, 887, 1346 |
| HpyF3I | CTNAG | 6 cut(s) | 297, 783, 822, 1187, 1224, 1283 |
| HpySE526I | ACGT | 2 cut(s) | 313, 947 |
| Hsp92I | GRCGYC | 1 cut(s) | 1151 |
| Hsp92II | CATG | 8 cut(s) | 226, 322, 554, 585, 888, 1147, 1241, 1353 |
| HspAI | GCGC | 2 cut(s) | 63, 1151 |
| KasI | GGCGCC | 1 cut(s) | 1150 |
| KroI | GCCGGC | 1 cut(s) | 65 |
| KroNI | GCCGGC | 1 cut(s) | 67 |
| Kzo9I | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| LmnI | GCTCC | 3 cut(s) | 205, 376, 438 |
| Lsp1109I | GCAGC | 6 cut(s) | 152, 159, 292, 649, 933, 971 |
| LweI | GCATC | 3 cut(s) | 908, 920, 1125 |
| MabI | ACCWGGT | 1 cut(s) | 1021 |
| MaeI | CTAG | 3 cut(s) | 555, 893, 1079 |
| MaeII | ACGT | 2 cut(s) | 313, 947 |
| MaeIII | GTNAC | 3 cut(s) | 574, 805, 979 |
| MalI | GATC | 7 cut(s) | 34, 228, 729, 738, 1074, 1180, 1322 |
| MboI | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| MboII | GAAGA | 9 cut(s) | 35, 256, 287, 512, 847, 916, 1094, 1144, 1178 |
| MhlI | GDGCHC | 3 cut(s) | 210, 596, 892 |
| MluCI | AATT | 7 cut(s) | 383, 448, 478, 870, 986, 1050, 1094 |
| Mly113I | GGCGCC | 1 cut(s) | 1151 |
| MlyI | GAGTC | 1 cut(s) | 813 |
| MmeI | TCCRAC | 1 cut(s) | 58 |
| MroNI | GCCGGC | 1 cut(s) | 65 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MseI | TTAA | 2 cut(s) | 689, 944 |
| MslI | CAYNNNNRTG | 4 cut(s) | 221, 916, 977, 1328 |
| MspI | CCGG | 4 cut(s) | 66, 96, 102, 361 |
| MspR9I | CCNGG | 6 cut(s) | 37, 96, 102, 570, 801, 1023 |
| Mva1269I | GAATGC | 1 cut(s) | 1019 |
| MvaI | CCWGG | 4 cut(s) | 37, 570, 801, 1023 |
| MvnI | CGCG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 302, 591, 887, 1346 |
| NaeI | GCCGGC | 1 cut(s) | 67 |
| NarI | GGCGCC | 1 cut(s) | 1151 |
| NciI | CCSGG | 2 cut(s) | 96, 102 |
| NdeI | CATATG | 1 cut(s) | 747 |
| NdeII | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| NgoMIV | GCCGGC | 1 cut(s) | 65 |
| NlaIII | CATG | 8 cut(s) | 226, 322, 554, 585, 888, 1147, 1241, 1353 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 41, 82, 100, 1152 |
| NmuCI | GTSAC | 3 cut(s) | 574, 805, 979 |
| NspI | RCATGY | 4 cut(s) | 554, 888, 1147, 1241 |
| NspV | TTCGAA | 2 cut(s) | 90, 1305 |
| OliI | CACNNNNGTG | 1 cut(s) | 977 |
| PctI | GAATGC | 1 cut(s) | 1019 |
| PdiI | GCCGGC | 1 cut(s) | 67 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 2 cut(s) | 422, 1135 |
| PfoI | TCCNGGA | 1 cut(s) | 799 |
| PkrI | GCNGC | 7 cut(s) | 167, 174, 307, 664, 883, 923, 961 |
| PleI | GAGTC | 1 cut(s) | 812 |
| PluTI | GGCGCC | 1 cut(s) | 1154 |
| PpsI | GAGTC | 1 cut(s) | 812 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| Psp124BI | GAGCTC | 1 cut(s) | 210 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| Psp6I | CCWGG | 4 cut(s) | 35, 568, 799, 1021 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 4 cut(s) | 35, 568, 799, 1021 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 41, 82, 100, 1152 |
| PspPI | GGNCC | 4 cut(s) | 40, 80, 98, 1019 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 330, 362 |
| RsaI | GTAC | 6 cut(s) | 128, 708, 1142, 1161, 1236, 1249 |
| RsaNI | GTAC | 6 cut(s) | 127, 707, 1141, 1160, 1235, 1248 |
| RseI | CAYNNNNRTG | 4 cut(s) | 221, 916, 977, 1328 |
| SacI | GAGCTC | 1 cut(s) | 210 |
| SaqAI | TTAA | 2 cut(s) | 689, 944 |
| SatI | GCNGC | 7 cut(s) | 166, 173, 306, 663, 882, 922, 960 |
| Sau3AI | GATC | 7 cut(s) | 32, 226, 727, 736, 1072, 1178, 1320 |
| Sau96I | GGNCC | 4 cut(s) | 40, 80, 98, 1019 |
| SchI | GAGTC | 1 cut(s) | 813 |
| ScrFI | CCNGG | 6 cut(s) | 37, 96, 102, 570, 801, 1023 |
| SduI | GDGCHC | 3 cut(s) | 210, 596, 892 |
| SexAI | ACCWGGT | 1 cut(s) | 1021 |
| SfaNI | GCATC | 3 cut(s) | 908, 920, 1125 |
| SfoI | GGCGCC | 1 cut(s) | 1152 |
| SfuI | TTCGAA | 2 cut(s) | 90, 1305 |
| SinI | GGWCC | 3 cut(s) | 40, 80, 1019 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 221, 916, 977, 1328 |
| SmlI | CTYRAG | 3 cut(s) | 176, 470, 615 |
| SmoI | CTYRAG | 3 cut(s) | 176, 470, 615 |
| Sse9I | AATT | 7 cut(s) | 383, 448, 478, 870, 986, 1050, 1094 |
| SsiI | CCGC | 6 cut(s) | 18, 61, 714, 882, 1017, 1338 |
| SspDI | GGCGCC | 1 cut(s) | 1150 |
| SspMI | CTAG | 3 cut(s) | 555, 893, 1079 |
| SstI | GAGCTC | 1 cut(s) | 210 |
| StyD4I | CCNGG | 6 cut(s) | 35, 94, 100, 568, 799, 1021 |
| TaaI | ACNGT | 2 cut(s) | 12, 1007 |
| TaiI | ACGT | 2 cut(s) | 316, 950 |
| TaqI | TCGA | 7 cut(s) | 45, 90, 210, 234, 1071, 1106, 1305 |
| TaqII | GACCGA | 1 cut(s) | 404 |
| TasI | AATT | 7 cut(s) | 383, 448, 478, 870, 986, 1050, 1094 |
| TatI | WGTACW | 3 cut(s) | 1140, 1159, 1234 |
| TauI | GCSGC | 1 cut(s) | 884 |
| TfiI | GAWTC | 2 cut(s) | 422, 1135 |
| Tru1I | TTAA | 2 cut(s) | 689, 944 |
| Tru9I | TTAA | 2 cut(s) | 689, 944 |
| TseFI | GTSAC | 3 cut(s) | 574, 805, 979 |
| TseI | GCWGC | 6 cut(s) | 165, 172, 305, 662, 921, 959 |
| Tsp45I | GTSAC | 3 cut(s) | 574, 805, 979 |
| TspDTI | ATGAA | 2 cut(s) | 764, 1057 |
| TspGWI | ACGGA | 1 cut(s) | 1140 |
| VneI | GTGCAC | 2 cut(s) | 592, 888 |
| VpaK11BI | GGWCC | 3 cut(s) | 40, 80, 1019 |
| XapI | RAATTY | 3 cut(s) | 383, 448, 986 |
| XceI | RCATGY | 4 cut(s) | 554, 888, 1147, 1241 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 139, 514 |
| XmiI | GTMKAC | 1 cut(s) | 14 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 3 cut(s) | 555, 893, 1079 |