FvH4_4g14790

NEDD8-activating enzyme E1 catalytic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
18435506 .. 18440052
4547 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14790.t2

Sequence Viewer

Length: 1353 bp
ATGGTGGAATCTACAGTCCAACAGAGCCGATCGAGGGACCTCGACAAGCTCCTCCTCCGACCCGGCAATCTCATCGGATCCAACTTCGAACCCGGCCCAGGACTGAGAGATGACCTGAAGGAGTACGTCAGGGTGTTGGTGGTCGGGGCCGGTGGCTTGGGCTGTGAATTGCTCAAGGACTTGGCTCTTTCTGGGTTTCGAGAGCTCGAGGTCATCGACATGGATCGCATTGAGGTCACTAACCTCAATCGTCAGTTCCTATTCAGGCTTGAAGATGTGGGAAAGCCCAAGGCTGAGGTGGCGGCGAAACGAGTGATGCAAAGAGTTACTGGGGTTAATATCATTCCCCACTTTTGCCGGATTGAGGACAAAGAGCTTGACTTCTACAGCAATTTCAGCATTATTGCTCTTGGTCTCGATTCGATTGAGGCTCGCAGCTACATCAACTCTGTTGCTTGTAGCTTTCTTGAGTATGATGCTGATGATAAACCACTAGAAGAAACTGTCAAACCTATGGTAGATGGTGGGACTGAAGGTTTTCAAGGACATGCTAGGGTCATTATGCCAGGGATGACTCCATGCTTTGAGTGTACAATCTGGCTTTTCCCCCCTCAAGTGAAGTTTCCTTTATGCACACTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGCATGAGGTACAGAGTGGAGAGACTTTTGATCCAGATGACCCTGGTCATATGAAGTGGGTATACGATGAGGCTACCAAGAGAGCTGAGCTATTTGGTATTCCAGGAGTTACATTGTCTCTCACTCAGGGGGTTGTGAAGAACATCATACCGGCTATTGCTTCCACAAATGCGATTATATCAGCTGCATGTGCACTAGAAACATTGAAGATTGCATCTGGATGCAGTAAAACTCTAACGAACTATCTAACGTATAATGGTGCACAAGGTCTCCACACGAAAGTGACAGAGTTTGTCAGGGACAAAGAATGTCTTGTATGTGGGCCAGGTGTTCTAATTGAGCTGGACACCTCAGTTACTTTGGAAAAGTTCATTGAGCTACTTGAAGAACACCCTAAATTGCTGTTGTCAAAAGCAAGCATTGCGCATAGAGGGAAGAATCTGTACATGCAAGCACCACCTGTACTGGAAGAGATGACCAGATCAAACTTAAGCAAGTCTCTCTATGACCTAATGGGAAAAATTCCCAAGGATGTTGTCCATGCTACTGGTACTACTGACAAGAACGACAAAAAGACTTCGGTTGTGAGAAAGTTACGAGTTGCTTTCAAGGGAGTTGATGGAATTACAGATATGGAGACTGCAGCAGGCGGGGCATGA

Protein Analysis

451

Amino Acids

49.59

Weight (kDa)

5.6

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiF PF00899 36 - 314 1.5e-56 ThiF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1119
AccI GTMKAC 1 cut(s) 756
AciI CCGC 2 cut(s) 302, 1344
AclWI GGATC 4 cut(s) 72, 85, 231, 719
AcsI RAATTY 1 cut(s) 1215
AcuI CTGAAG 2 cut(s) 137, 552
AfaI GTAC 6 cut(s) 125, 592, 705, 1139, 1158, 1246
AfiI CCNNNNNNNGG 3 cut(s) 34, 98, 364
AflII CTTAAG 1 cut(s) 1183
AgsI TTSAA 6 cut(s) 272, 542, 674, 901, 1079, 1303
AjnI CCWGG 5 cut(s) 97, 565, 736, 796, 1018
AleI CACNNNNGTG 1 cut(s) 974
Alw21I GWGCWC 3 cut(s) 207, 889, 958
Alw26I GTCTC 6 cut(s) 419, 710, 816, 968, 1197, 1325
Alw44I GTGCAC 2 cut(s) 885, 954
AlwI GGATC 4 cut(s) 72, 85, 231, 719
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 94, 147, 1016
ApaLI GTGCAC 2 cut(s) 885, 954
ApeKI GCWGC 4 cut(s) 435, 659, 878, 1337
ApoI RAATTY 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 1120
AspS9I GGNCC 4 cut(s) 37, 95, 147, 1016
AsuC2I CCSGG 2 cut(s) 63, 93
AsuHPI GGTGA 1 cut(s) 674
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 2 cut(s) 889, 958
BamHI GGATCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 207
BarI GAAGNNNNNNTAC 4 cut(s) 740, 772, 1121, 1153
Bbv12I GWGCWC 3 cut(s) 207, 889, 958
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 447, 646, 865, 1349
BccI CCATC 2 cut(s) 515, 1307
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 5 cut(s) 99, 567, 738, 798, 1020
BcnI CCSGG 2 cut(s) 63, 93
BcoDI GTCTC 6 cut(s) 419, 710, 816, 968, 1197, 1325
BfaI CTAG 4 cut(s) 494, 552, 651, 890
BfmI CTRYAG 3 cut(s) 12, 385, 1335
BfrI CTTAAG 1 cut(s) 1183
BisI GCNGC 5 cut(s) 303, 436, 660, 879, 1338
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 5 cut(s) 304, 437, 661, 880, 1339
Bme1390I CCNGG 7 cut(s) 63, 93, 99, 567, 738, 798, 1020
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 4 cut(s) 37, 95, 147, 1016
BmiI GGNNCC 3 cut(s) 38, 79, 148
BmrFI CCNGG 7 cut(s) 63, 93, 99, 567, 738, 798, 1020
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 4 cut(s) 306, 466, 905, 917
BmuI ACTGGG 1 cut(s) 339
BoxI GACNNNNGTC 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 3 cut(s) 158, 488, 597
BpuMI CCSGG 2 cut(s) 63, 93
BsaI GGTCTC 2 cut(s) 419, 968
BsaJI CCNNGG 5 cut(s) 97, 288, 566, 736, 1221
BsaXI ACNNNNNCTCC 2 cut(s) 948, 978
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 98, 364
Bse118I RCCGGY 2 cut(s) 149, 844
Bse1I ACTGG 3 cut(s) 334, 1164, 1246
Bse3DI GCAATG 1 cut(s) 1113
BseBI CCWGG 5 cut(s) 99, 567, 738, 798, 1020
BseDI CCNNGG 5 cut(s) 97, 288, 566, 736, 1221
BseGI GGATG 3 cut(s) 576, 920, 1231
BseLI CCNNNNNNNGG 3 cut(s) 34, 98, 364
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 5 cut(s) 95, 285, 771, 833, 1059
BseNI ACTGG 3 cut(s) 334, 1164, 1246
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 2 cut(s) 889, 958
BseXI GCAGC 4 cut(s) 447, 646, 865, 1349
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 96, 149, 1018
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 3 cut(s) 207, 889, 958
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 5 cut(s) 63, 93, 150, 358, 845
BslFI GGGAC 3 cut(s) 50, 541, 1007
BslI CCNNNNNNNGG 3 cut(s) 34, 98, 364
BsmAI GTCTC 6 cut(s) 419, 710, 816, 968, 1197, 1325
BsmFI GGGAC 3 cut(s) 50, 541, 1007
BsnI GGCC 3 cut(s) 96, 149, 1018
Bso31I GGTCTC 2 cut(s) 419, 968
BsoBI CYCGRG 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 3 cut(s) 207, 889, 958
Bsp1407I TGTACA 2 cut(s) 590, 1137
Bsp143I GATC 5 cut(s) 29, 77, 223, 724, 1175
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 2 cut(s) 302, 1344
BspANI GGCC 3 cut(s) 96, 149, 1018
BspCNI CTCAG 5 cut(s) 96, 286, 772, 832, 1058
BspLI GGNNCC 3 cut(s) 38, 79, 148
BspMAI CTGCAG 1 cut(s) 1339
BspPI GGATC 4 cut(s) 72, 85, 231, 719
BspT104I TTCGAA 1 cut(s) 87
BspTI CTTAAG 1 cut(s) 1183
BspTNI GGTCTC 2 cut(s) 419, 968
BsrDI GCAATG 1 cut(s) 1113
BsrFI RCCGGY 2 cut(s) 149, 844
BsrGI TGTACA 2 cut(s) 590, 1137
BsrI ACTGG 3 cut(s) 334, 1164, 1246
BssAI RCCGGY 2 cut(s) 149, 844
BssECI CCNNGG 5 cut(s) 97, 288, 566, 736, 1221
BssMI GATC 5 cut(s) 29, 77, 223, 724, 1175
BssNAI GTATAC 1 cut(s) 757
BssT1I CCWWGG 2 cut(s) 288, 1221
Bst1107I GTATAC 1 cut(s) 757
Bst2UI CCWGG 5 cut(s) 99, 567, 738, 798, 1020
Bst4CI ACNGT 2 cut(s) 16, 505
Bst6I CTCTTC 1 cut(s) 1158
BstAFI CTTAAG 1 cut(s) 1183
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstAUI TGTACA 2 cut(s) 590, 1137
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 4 cut(s) 433, 1111, 1146, 1342
BstDEI CTNAG 5 cut(s) 104, 294, 780, 819, 1045
BstF5I GGATG 3 cut(s) 576, 920, 1231
BstHHI GCGC 1 cut(s) 1120
BstKTI GATC 5 cut(s) 32, 80, 226, 727, 1178
BstMAI GTCTC 6 cut(s) 419, 710, 816, 968, 1197, 1325
BstMBI GATC 5 cut(s) 29, 77, 223, 724, 1175
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 5 cut(s) 299, 396, 884, 1115, 1346
BstNI CCWGG 5 cut(s) 99, 567, 738, 798, 1020
BstNSI RCATGY 3 cut(s) 551, 885, 1144
BstPAI GACNNNNGTC 1 cut(s) 738
BstSCI CCNGG 7 cut(s) 61, 91, 97, 565, 736, 796, 1018
BstSFI CTRYAG 3 cut(s) 12, 385, 1335
BstSLI GKGCMC 2 cut(s) 889, 958
BstV1I GCAGC 4 cut(s) 447, 646, 865, 1349
BstX2I RGATCY 1 cut(s) 77
BstXI CCANNNNNNTGG 1 cut(s) 1241
BstYI RGATCY 1 cut(s) 77
BstZ17I GTATAC 1 cut(s) 757
BsuRI GGCC 3 cut(s) 96, 149, 1018
BtsCI GGATG 3 cut(s) 576, 920, 1231
Cac8I GCNNGC 4 cut(s) 433, 1111, 1146, 1342
CfoI GCGC 1 cut(s) 1120
Cfr10I RCCGGY 2 cut(s) 149, 844
Cfr13I GGNCC 4 cut(s) 37, 95, 147, 1016
Csp6I GTAC 6 cut(s) 124, 591, 704, 1138, 1157, 1245
CviAII CATG 8 cut(s) 220, 548, 579, 698, 882, 1141, 1235, 1350
CviQI GTAC 6 cut(s) 124, 591, 704, 1138, 1157, 1245
DdeI CTNAG 5 cut(s) 104, 294, 780, 819, 1045
DpnI GATC 5 cut(s) 31, 79, 225, 726, 1177
DpnII GATC 5 cut(s) 29, 77, 223, 724, 1175
Eam1104I CTCTTC 1 cut(s) 1158
EarI CTCTTC 1 cut(s) 1158
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 288, 1221
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 2 cut(s) 419, 968
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 137, 552
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 5 cut(s) 97, 565, 736, 796, 1018
EcoT14I CCWWGG 2 cut(s) 288, 1221
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 288, 1221
FaeI CATG 8 cut(s) 223, 551, 582, 701, 885, 1144, 1238, 1353
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 3 cut(s) 50, 541, 1007
FatI CATG 8 cut(s) 219, 547, 578, 697, 881, 1140, 1234, 1349
FauI CCCGC 1 cut(s) 1337
FauNDI CATATG 1 cut(s) 744
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 5 cut(s) 303, 436, 660, 879, 1338
FokI GGATG 3 cut(s) 583, 927, 1238
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 5 cut(s) 303, 436, 660, 879, 1338
FspBI CTAG 4 cut(s) 494, 552, 651, 890
FspI TGCGCA 1 cut(s) 1119
GlaI GCGC 1 cut(s) 1119
GluI GCNGC 5 cut(s) 303, 436, 660, 879, 1338
HaeIII GGCC 3 cut(s) 96, 149, 1018
HapII CCGG 5 cut(s) 63, 93, 150, 358, 845
HhaI GCGC 1 cut(s) 1120
Hin1II CATG 8 cut(s) 223, 551, 582, 701, 885, 1144, 1238, 1353
Hin6I GCGC 1 cut(s) 1118
HinP1I GCGC 1 cut(s) 1118
HinfI GANTC 4 cut(s) 8, 419, 574, 1132
HpaII CCGG 5 cut(s) 63, 93, 150, 358, 845
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 4 cut(s) 591, 757, 887, 956
Hpy188I TCNGA 2 cut(s) 59, 77
Hpy188III TCNNGA 5 cut(s) 200, 416, 467, 728, 912
Hpy8I GTNNAC 4 cut(s) 591, 757, 887, 956
HpyAV CCTTC 2 cut(s) 112, 527
HpyCH4III ACNGT 2 cut(s) 16, 505
HpyCH4IV ACGT 2 cut(s) 126, 944
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 396, 884, 1115, 1346
HpyF3I CTNAG 5 cut(s) 104, 294, 780, 819, 1045
HpySE526I ACGT 2 cut(s) 126, 944
Hsp92II CATG 8 cut(s) 223, 551, 582, 701, 885, 1144, 1238, 1353
HspAI GCGC 1 cut(s) 1118
Kzo9I GATC 5 cut(s) 29, 77, 223, 724, 1175
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 4 cut(s) 447, 646, 865, 1349
LweI GCATC 4 cut(s) 306, 466, 905, 917
MaeI CTAG 4 cut(s) 494, 552, 651, 890
MaeII ACGT 2 cut(s) 126, 944
MaeIII GTNAC 6 cut(s) 235, 325, 802, 976, 1048, 1287
MalI GATC 5 cut(s) 31, 79, 225, 726, 1177
MboI GATC 5 cut(s) 29, 77, 223, 724, 1175
MboII GAAGA 7 cut(s) 284, 509, 844, 913, 1091, 1141, 1175
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 3 cut(s) 207, 889, 958
MluCI AATT 7 cut(s) 167, 391, 687, 1029, 1091, 1215, 1317
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 3 cut(s) 43, 82, 105
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 3 cut(s) 336, 690, 1184
MslI CAYNNNNRTG 3 cut(s) 218, 913, 974
MspA1I CMGCKG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 1183
MspI CCGG 5 cut(s) 63, 93, 150, 358, 845
MspR9I CCNGG 7 cut(s) 63, 93, 99, 567, 738, 798, 1020
MvaI CCWGG 5 cut(s) 99, 567, 738, 798, 1020
MwoI GCNNNNNNNGC 5 cut(s) 299, 396, 884, 1115, 1346
NciI CCSGG 2 cut(s) 63, 93
NdeI CATATG 1 cut(s) 744
NdeII GATC 5 cut(s) 29, 77, 223, 724, 1175
NlaIII CATG 8 cut(s) 223, 551, 582, 701, 885, 1144, 1238, 1353
NlaIV GGNNCC 3 cut(s) 38, 79, 148
NmuCI GTSAC 2 cut(s) 235, 976
NsbI TGCGCA 1 cut(s) 1119
NspI RCATGY 3 cut(s) 551, 885, 1144
NspV TTCGAA 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 974
PaeR7I CTCGAG 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 8, 419, 1132
PfoI TCCNGGA 1 cut(s) 796
PkrI GCNGC 5 cut(s) 304, 437, 661, 880, 1339
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PpuMI RGGWCCY 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 5 cut(s) 97, 565, 736, 796, 1018
PspGI CCWGG 5 cut(s) 97, 565, 736, 796, 1018
PspN4I GGNNCC 3 cut(s) 38, 79, 148
PspPI GGNCC 4 cut(s) 37, 95, 147, 1016
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 206
PstI CTGCAG 1 cut(s) 1339
PsuI RGATCY 1 cut(s) 77
PvuI CGATCG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 6 cut(s) 125, 592, 705, 1139, 1158, 1246
RsaNI GTAC 6 cut(s) 124, 591, 704, 1138, 1157, 1245
RseI CAYNNNNRTG 3 cut(s) 218, 913, 974
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 336, 690, 1184
SatI GCNGC 5 cut(s) 303, 436, 660, 879, 1338
Sau3AI GATC 5 cut(s) 29, 77, 223, 724, 1175
Sau96I GGNCC 4 cut(s) 37, 95, 147, 1016
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 7 cut(s) 63, 93, 99, 567, 738, 798, 1020
SduI GDGCHC 3 cut(s) 207, 889, 958
SfaNI GCATC 4 cut(s) 306, 466, 905, 917
SfcI CTRYAG 3 cut(s) 12, 385, 1335
Sfr274I CTCGAG 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 218, 913, 974
SmlI CTYRAG 5 cut(s) 173, 206, 467, 612, 1183
SmoI CTYRAG 5 cut(s) 173, 206, 467, 612, 1183
Sse9I AATT 7 cut(s) 167, 391, 687, 1029, 1091, 1215, 1317
SsiI CCGC 2 cut(s) 302, 1344
SspMI CTAG 4 cut(s) 494, 552, 651, 890
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 7 cut(s) 61, 91, 97, 565, 736, 796, 1018
StyI CCWWGG 2 cut(s) 288, 1221
TaaI ACNGT 2 cut(s) 16, 505
TaiI ACGT 2 cut(s) 129, 947
TaqI TCGA 8 cut(s) 32, 42, 87, 199, 207, 216, 417, 422
TasI AATT 7 cut(s) 167, 391, 687, 1029, 1091, 1215, 1317
TatI WGTACW 3 cut(s) 590, 1137, 1156
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 3 cut(s) 8, 419, 1132
Tru1I TTAA 3 cut(s) 336, 690, 1184
Tru9I TTAA 3 cut(s) 336, 690, 1184
TseFI GTSAC 2 cut(s) 235, 976
TseI GCWGC 4 cut(s) 435, 659, 878, 1337
Tsp45I GTSAC 2 cut(s) 235, 976
TspDTI ATGAA 2 cut(s) 761, 1054
Vha464I CTTAAG 1 cut(s) 1183
VneI GTGCAC 2 cut(s) 885, 954
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 1215
XceI RCATGY 3 cut(s) 551, 885, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 4 cut(s) 494, 552, 651, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.