AT5G19180

E2_bind

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6453248 .. 6456033
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19180.2

Sequence Viewer

Length: 1365 bp
ATGGCTGATCTCGATGTTCCTCCTCAAGTTCCTCAAAGTAAAACTAGAGACCTTGACAAGCTTCTTCTCCGTCATGGGAATCTCGTTGACCCCGGCTTCGTACCCGGACCCGGCCTGAGGGATGACATAAGGGATTATGTGAGAATCTTGGTGATTGGTGCGGGTGGGTTGGGTTGTGAGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTAATCTCGAAGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAATGGAGAGAGTGAGTGGAGTAGAGATTGTGCCGCATTTTTCACGTATAGAAGACAAAGAGATTGAGTTTTATAACGATTTTAATATCATTGCTCTTGGTCTTGATTCTATCGAAGCTCGCAAATACATCAATGGGGTAGCTTGTGGGTTTCTTGAGTATAATGAAGATGATACTCCGAAAAGAGAAACGATCAAGCCAATGGTAGATGGGGGAACTGAAGGTTTCAAGGGTCATGCTAGAGTTATCTTGCCTGGAGTTACACCCTGTTTTGAGTGCACTATTTATCTTTTCCCACCTCAAGTGAAGTTTCCGTTGTGCACTCTTGCAGAAACCCCTAGGAATGCAGCTCATTGCATTGAATATGCTCATCTTATTCAGTGGGAAACGGTTCATCGTGGGAAAACCTTTGATCCTGATGAACCAGAACATATGAAGTGGGTTTATGATGAGGCTATCAGGAGAGCTGAGCTTTTTGGAATTCCAGGTGTCACATACTCTCTCACACAAGGTGTGGTTAAAAACATAATACCGGCGATTGCTTCCACCAATGCGATAATATCTGCAGCTTGTGCACTTGAAACCTTGAAGATTGTGTCTGCATGCAGCAAAACACTTGTAAATTATTTGACGTATAACGGTGGAGAGGGTCTTTACACTGAAGTGACAAAGTTCGAGAGGGACACCGAATGTCTTGTATGTGGTCCGGGCATTCTGATTGAGCTGGACACCTCAGTCACTTTATCAAAGTTCATTGAGATGCTTGAAGATCACCCGAAGCTTCTATTGTCAAAAGCAAGTGTTAAACAGGGGGAAAACACTCTCTACATGCAGGCACCTCCGGTTCTAGAAGAGTTTCACAGACCAAAGCTAAGCAAGCCGCTTTATGACCTCATGGGAAGAGTCCAGAAGGACACTATCCACGTGTTTGGACAAAGAGCCCTCAAGAACAATGAGAAAGAGTCGTGCACAACGAAGGTAAGAGTTGTATTCAAAGGAGCCGATGGTGTTGCAGACATGGATACAGCCATTGGAGCATGA

Protein Analysis

454

Amino Acids

50.54

Weight (kDa)

5.46

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiF PF00899 40 - 340 8.6e-59 ThiF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AasI GACNNNNNNGTC 1 cut(s) 1058
AccB1I GGYRCC 1 cut(s) 1159
AciI CCGC 3 cut(s) 161, 359, 1205
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 2 cut(s) 564, 1005
AcvI CACGTG 1 cut(s) 1249
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 110, 117, 244
AflIII ACRYGT 1 cut(s) 1248
AgsI TTSAA 7 cut(s) 284, 553, 686, 905, 913, 1091, 1318
AjnI CCWGG 2 cut(s) 577, 808
AleI CACNNNNGTG 1 cut(s) 986
Alw21I GWGCWC 4 cut(s) 605, 647, 901, 1295
Alw26I GTCTC 1 cut(s) 42
Alw44I GTGCAC 4 cut(s) 601, 643, 897, 1291
AlwI GGATC 1 cut(s) 731
AlwNI CAGNNNCTG 1 cut(s) 271
AoxI GGCC 1 cut(s) 112
ApaLI GTGCAC 4 cut(s) 601, 643, 897, 1291
ApeKI GCWGC 4 cut(s) 314, 671, 890, 930
ApoI RAATTY 1 cut(s) 804
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 2 cut(s) 714, 1179
AspA2I CCTAGG 1 cut(s) 662
AspS9I GGNCC 3 cut(s) 107, 235, 1028
AsuC2I CCSGG 4 cut(s) 93, 105, 111, 1032
AsuHPI GGTGA 2 cut(s) 163, 1088
AvaII GGWCC 3 cut(s) 107, 235, 1028
AvrII CCTAGG 1 cut(s) 662
AxyI CCTNAGG 2 cut(s) 116, 300
BaeGI GKGCMC 4 cut(s) 605, 647, 901, 1295
BanI GGYRCC 1 cut(s) 1159
BanII GRGCYC 1 cut(s) 1267
BbrPI CACGTG 1 cut(s) 1249
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 4 cut(s) 605, 647, 901, 1295
BbvI GCAGC 4 cut(s) 326, 683, 902, 942
BccI CCATC 2 cut(s) 527, 1322
BcgI CGANNNNNNTGC 2 cut(s) 1316, 1350
BciT130I CCWGG 2 cut(s) 579, 810
BciVI GTATCC 1 cut(s) 1339
BcnI CCSGG 4 cut(s) 93, 105, 111, 1032
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 4 cut(s) 45, 564, 663, 1172
BfmI CTRYAG 1 cut(s) 888
BfuI GTATCC 1 cut(s) 1339
BisI GCNGC 6 cut(s) 315, 359, 672, 891, 931, 1205
BlnI CCTAGG 1 cut(s) 662
BlpI GCTNAGC 2 cut(s) 792, 1196
BlsI GCNGC 6 cut(s) 316, 360, 673, 892, 932, 1206
Bme1390I CCNGG 6 cut(s) 93, 105, 111, 579, 810, 1032
Bme18I GGWCC 3 cut(s) 107, 235, 1028
BmgT120I GGNCC 3 cut(s) 107, 235, 1028
BmiI GGNNCC 3 cut(s) 109, 1161, 1324
BmrFI CCNGG 6 cut(s) 93, 105, 111, 579, 810, 1032
BmsI GCATC 1 cut(s) 1074
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 600
Bpu1102I GCTNAGC 2 cut(s) 792, 1196
BpuEI CTTGAG 5 cut(s) 9, 170, 500, 609, 1253
BpuMI CCSGG 4 cut(s) 93, 105, 111, 1032
BsaAI YACGTR 2 cut(s) 371, 1249
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 91, 662
BsaWI WCCGGW 1 cut(s) 1165
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 117, 244
Bse118I RCCGGY 1 cut(s) 856
Bse1I ACTGG 1 cut(s) 265
Bse21I CCTNAGG 2 cut(s) 116, 300
Bse3DI GCAATG 2 cut(s) 414, 676
BseBI CCWGG 2 cut(s) 579, 810
BseDI CCNNGG 2 cut(s) 91, 662
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 3 cut(s) 110, 117, 244
BseMI GCAATG 2 cut(s) 414, 676
BseMII CTCAG 3 cut(s) 107, 783, 1071
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 4 cut(s) 605, 647, 901, 1295
BseXI GCAGC 4 cut(s) 326, 683, 902, 942
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 1159
BsiHKAI GWGCWC 4 cut(s) 605, 647, 901, 1295
BsiSI CCGG 6 cut(s) 93, 105, 111, 857, 1031, 1166
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 3 cut(s) 110, 117, 244
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 1019
BsmI GAATGC 2 cut(s) 673, 1035
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 5 cut(s) 605, 647, 901, 1267, 1295
Bsp143I GATC 4 cut(s) 7, 516, 736, 1093
Bsp1720I GCTNAGC 2 cut(s) 792, 1196
BspACI CCGC 3 cut(s) 161, 359, 1205
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 3 cut(s) 108, 784, 1070
BspLI GGNNCC 3 cut(s) 109, 1161, 1324
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 1159
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 2 cut(s) 414, 676
BsrFI RCCGGY 1 cut(s) 856
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 856
BssECI CCNNGG 2 cut(s) 91, 662
BssMI GATC 4 cut(s) 7, 516, 736, 1093
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 579, 810
Bst4CI ACNGT 3 cut(s) 239, 715, 965
Bst6I CTCTTC 2 cut(s) 1170, 1219
BstAPI GCANNNNNTGC 1 cut(s) 896
BstBAI YACGTR 2 cut(s) 371, 1249
BstC8I GCNNGC 4 cut(s) 445, 928, 1158, 1202
BstDEI CTNAG 5 cut(s) 116, 300, 792, 1057, 1196
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 4 cut(s) 10, 519, 739, 1096
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 7, 516, 736, 1093
BstMWI GCNNNNNNNGC 4 cut(s) 311, 896, 1201, 1358
BstNI CCWGG 2 cut(s) 579, 810
BstNSI RCATGY 2 cut(s) 930, 1156
BstSCI CCNGG 6 cut(s) 91, 103, 109, 577, 808, 1030
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 4 cut(s) 605, 647, 901, 1295
BstV1I GCAGC 4 cut(s) 326, 683, 902, 942
BstV2I GAAGAC 1 cut(s) 384
BstXI CCANNNNNNTGG 1 cut(s) 1253
Bsu36I CCTNAGG 2 cut(s) 116, 300
BsuI GTATCC 1 cut(s) 1339
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 710, 981
Cac8I GCNNGC 4 cut(s) 445, 928, 1158, 1202
CaiI CAGNNNCTG 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 856
Cfr13I GGNCC 3 cut(s) 107, 235, 1028
Csp6I GTAC 1 cut(s) 101
CviAII CATG 7 cut(s) 74, 560, 927, 1153, 1219, 1342, 1362
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 5 cut(s) 116, 300, 792, 1057, 1196
DpnI GATC 4 cut(s) 9, 518, 738, 1095
DpnII GATC 4 cut(s) 7, 516, 736, 1093
DraIII CACNNNGTG 1 cut(s) 836
DrdI GACNNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 1058
Eam1104I CTCTTC 2 cut(s) 1170, 1219
EarI CTCTTC 2 cut(s) 1170, 1219
Eco130I CCWWGG 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 1267
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 3 cut(s) 107, 235, 1028
Eco57I CTGAAG 2 cut(s) 564, 1005
Eco72I CACGTG 1 cut(s) 1249
Eco81I CCTNAGG 2 cut(s) 116, 300
EcoRI GAATTC 1 cut(s) 804
EcoRII CCWGG 2 cut(s) 577, 808
EcoT14I CCWWGG 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 1267
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 7 cut(s) 77, 563, 930, 1156, 1222, 1345, 1365
FaqI GGGAC 1 cut(s) 1019
FatI CATG 7 cut(s) 73, 559, 926, 1152, 1218, 1341, 1361
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 756
Fnu4HI GCNGC 6 cut(s) 315, 359, 672, 891, 931, 1205
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 1267
Fsp4HI GCNGC 6 cut(s) 315, 359, 672, 891, 931, 1205
FspBI CTAG 4 cut(s) 45, 564, 663, 1172
GluI GCNGC 6 cut(s) 315, 359, 672, 891, 931, 1205
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 1 cut(s) 114
HapII CCGG 6 cut(s) 93, 105, 111, 857, 1031, 1166
Hin1II CATG 7 cut(s) 77, 563, 930, 1156, 1222, 1345, 1365
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 59, 1103
HinfI GANTC 5 cut(s) 79, 144, 431, 1227, 1286
HpaII CCGG 6 cut(s) 93, 105, 111, 857, 1031, 1166
HphI GGTGA 2 cut(s) 163, 1088
Hpy166II GTNNAC 5 cut(s) 88, 603, 645, 899, 1293
Hpy188I TCNGA 2 cut(s) 504, 1041
Hpy8I GTNNAC 5 cut(s) 88, 603, 645, 899, 1293
HpyAV CCTTC 3 cut(s) 539, 1228, 1294
HpyCH4III ACNGT 3 cut(s) 239, 715, 965
HpyCH4IV ACGT 3 cut(s) 370, 956, 1248
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 896, 1201, 1358
HpyF3I CTNAG 5 cut(s) 116, 300, 792, 1057, 1196
HpySE526I ACGT 3 cut(s) 370, 956, 1248
Hsp92II CATG 7 cut(s) 77, 563, 930, 1156, 1222, 1345, 1365
Kzo9I GATC 4 cut(s) 7, 516, 736, 1093
LmnI GCTCC 2 cut(s) 1322, 1358
Lsp1109I GCAGC 4 cut(s) 326, 683, 902, 942
LweI GCATC 1 cut(s) 1074
MaeI CTAG 4 cut(s) 45, 564, 663, 1172
MaeII ACGT 3 cut(s) 370, 956, 1248
MaeIII GTNAC 5 cut(s) 247, 583, 814, 988, 1060
MalI GATC 4 cut(s) 9, 518, 738, 1095
MboI GATC 4 cut(s) 7, 516, 736, 1093
MboII GAAGA 8 cut(s) 56, 296, 389, 503, 925, 1103, 1187, 1236
MhlI GDGCHC 5 cut(s) 605, 647, 901, 1267, 1295
MluCI AATT 2 cut(s) 804, 946
MlyI GAGTC 2 cut(s) 1236, 1295
MroXI GAANNNNTTC 2 cut(s) 714, 1179
MseI TTAA 3 cut(s) 408, 843, 1128
MslI CAYNNNNRTG 2 cut(s) 986, 1082
MspI CCGG 6 cut(s) 93, 105, 111, 857, 1031, 1166
MspR9I CCNGG 6 cut(s) 93, 105, 111, 579, 810, 1032
Mva1269I GAATGC 2 cut(s) 673, 1035
MvaI CCWGG 2 cut(s) 579, 810
MwoI GCNNNNNNNGC 4 cut(s) 311, 896, 1201, 1358
NciI CCSGG 4 cut(s) 93, 105, 111, 1032
NdeI CATATG 1 cut(s) 756
NdeII GATC 4 cut(s) 7, 516, 736, 1093
NlaIII CATG 7 cut(s) 77, 563, 930, 1156, 1222, 1345, 1365
NlaIV GGNNCC 3 cut(s) 109, 1161, 1324
NmuCI GTSAC 3 cut(s) 814, 988, 1060
NspI RCATGY 2 cut(s) 930, 1156
OliI CACNNNNGTG 1 cut(s) 986
PaeI GCATGC 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 1295
PctI GAATGC 2 cut(s) 673, 1035
PdmI GAANNNNTTC 2 cut(s) 714, 1179
PfeI GAWTC 3 cut(s) 79, 144, 431
PkrI GCNGC 6 cut(s) 316, 360, 673, 892, 932, 1206
PleI GAGTC 2 cut(s) 1235, 1294
PmaCI CACGTG 1 cut(s) 1249
PmlI CACGTG 1 cut(s) 1249
PpsI GAGTC 2 cut(s) 1235, 1294
Ppu21I YACGTR 2 cut(s) 371, 1249
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 577, 808
PspCI CACGTG 1 cut(s) 1249
PspGI CCWGG 2 cut(s) 577, 808
PspN4I GGNNCC 3 cut(s) 109, 1161, 1324
PspPI GGNCC 3 cut(s) 107, 235, 1028
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 986, 1082
SaqAI TTAA 3 cut(s) 408, 843, 1128
SatI GCNGC 6 cut(s) 315, 359, 672, 891, 931, 1205
Sau3AI GATC 4 cut(s) 7, 516, 736, 1093
Sau96I GGNCC 3 cut(s) 107, 235, 1028
SchI GAGTC 2 cut(s) 1236, 1295
ScrFI CCNGG 6 cut(s) 93, 105, 111, 579, 810, 1032
SduI GDGCHC 5 cut(s) 605, 647, 901, 1267, 1295
SfaNI GCATC 1 cut(s) 1074
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 3 cut(s) 107, 235, 1028
SmiMI CAYNNNNRTG 2 cut(s) 986, 1082
SmlI CTYRAG 5 cut(s) 24, 185, 479, 624, 1268
SmoI CTYRAG 5 cut(s) 24, 185, 479, 624, 1268
SphI GCATGC 1 cut(s) 930
Sse9I AATT 2 cut(s) 804, 946
SsiI CCGC 3 cut(s) 161, 359, 1205
SspMI CTAG 4 cut(s) 45, 564, 663, 1172
StyD4I CCNGG 6 cut(s) 91, 103, 109, 577, 808, 1030
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 3 cut(s) 239, 715, 965
TaiI ACGT 3 cut(s) 373, 959, 1251
TaqI TCGA 4 cut(s) 12, 219, 438, 999
TasI AATT 2 cut(s) 804, 946
TauI GCSGC 2 cut(s) 361, 1207
TfiI GAWTC 3 cut(s) 79, 144, 431
Tru1I TTAA 3 cut(s) 408, 843, 1128
Tru9I TTAA 3 cut(s) 408, 843, 1128
TscAI CASTG 2 cut(s) 710, 988
TseFI GTSAC 3 cut(s) 814, 988, 1060
TseI GCWGC 4 cut(s) 314, 671, 890, 930
Tsp45I GTSAC 3 cut(s) 814, 988, 1060
TspDTI ATGAA 5 cut(s) 504, 707, 759, 773, 1066
TspGWI ACGGA 2 cut(s) 59, 627
TspRI CASTG 2 cut(s) 710, 988
VneI GTGCAC 4 cut(s) 601, 643, 897, 1291
VpaK11BI GGWCC 3 cut(s) 107, 235, 1028
XapI RAATTY 1 cut(s) 804
XbaI TCTAGA 1 cut(s) 1171
XceI RCATGY 2 cut(s) 930, 1156
XmaJI CCTAGG 1 cut(s) 662
XmnI GAANNNNTTC 2 cut(s) 714, 1179
XspI CTAG 4 cut(s) 45, 564, 663, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.