Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000039.1

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

56821 .. 58521

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000039.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggtgggtcaaggggaggaggctataggtggaggaggtgagggtgacgatgtggtggctcaaggtggagatcttggaaaaccgaaacgatgtttgaggtctctgattgaattagggtttaatgttgatgagggattcgacgtgaagctcttctatggggctagaaaccttgacagaatggcttatccggtgagtggtatcattgcagtggaacagtggttattggagtggagaggaaacgaggtgctgagaaggctgggagtgaagggcgtggagataaagaaaccagagcagctcaaaaccgtggcctcactcataatctctggaggagagagcaccaccatggctaaactcgccgagtaccacaacctggtctctctatcactcacccaaacagtctctattatttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009228 GO:0009987 GO:0010941 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042723 GO:0042724 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0060548 GO:0065007 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 SNO

Protein Analysis

137

Amino Acids

14.78

Weight (kDa)

5.22

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	194, 370
AgsI	TTSAA	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	148, 295
AluI	AGCT	2 cut(s)	148, 295
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	3 cut(s)	105, 379, 403
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	149
AsuHPI	GGTGA	4 cut(s)	50, 56, 202, 379
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	105, 379, 403
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	105, 379
BsaJI	CCNNGG	2 cut(s)	303, 342
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 370
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	303, 342
BseLI	CCNNNNNNNGG	2 cut(s)	194, 370
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	3 cut(s)	32, 48, 342
BseXI	GCAGC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	194, 370
BsmAI	GTCTC	3 cut(s)	105, 379, 403
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	2 cut(s)	105, 379
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	342
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	105, 379
BsrDI	GCAATG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	303, 342
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	216, 304, 397
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	2 cut(s)	303, 342
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	3 cut(s)	105, 379, 403
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 353
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	308
BtgI	CCRYGG	2 cut(s)	303, 342
BtrI	CACGTC	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 221
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	9 cut(s)	23, 59, 148, 161, 182, 256, 295, 308, 347
CviKI_1	RGCY	9 cut(s)	23, 59, 148, 161, 182, 256, 295, 308, 347
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	2 cut(s)	105, 379
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	346
FaiI	YATR	4 cut(s)	26, 156, 317, 344
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	293
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	346
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	4 cut(s)	50, 56, 202, 379
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	324
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	246, 259
HpyCH4III	ACNGT	3 cut(s)	216, 304, 397
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 353
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	155
LpnPI	CCDG	6 cut(s)	201, 242, 300, 309, 356, 383
Lsp1109I	GCAGC	1 cut(s)	304
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	2 cut(s)	206, 341
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	253, 353
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	206, 341
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	338
SexAI	ACCWGGT	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	206, 341
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	110
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	216, 304, 397
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	213, 221
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	44
TspRI	CASTG	2 cut(s)	213, 221
Van91I	CCANNNNNTGG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.