Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

38582659 .. 38584390

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTGGGTGAGAAAAGGATTTAGGACTTTGAAACTAAGGGGGGTTGTGAAGAACATTATACCAGCTATTGCTTCCACAAATGCGATTATATCAGCTGCCTGTGCGCTAGAAACATTGAAGATTGCATCTGGATGCAGTAAAACTCTATCGAACTATCTAACGTATAATGGTGCAGAAGTCCTCCACACGAAAGTGACCGAGTTTGTCAGGGACAAAGACTGTCTTGTATGTGGCCCAGGTGTTCTTATTGAGCTGGACACCTCAGTTACTTTGCAAAAGTTCATTGAGCTACTTGAAGAACACCCTAAATTGCTGTTGTCAAAAGCAAGCATTGCGCATAGAGGAAAGAATTTGTACATGCAAGCGCCGCCTGTACTGGAAGAGATGACCAGATCAAACTTAAGCAAGTCTCTCTATGACCTAATGGGCAAAATTCCCAAAGATGTTGTCCATAAGACTGGTACTACCAACAAGAATGACAAAAAGACTTCGGTTCTGAGAAAGATACGAGTTGTTTTCAAGCGAGGTGATGGAATTACAGATATGGAGACTGCAGCAGGTGGGGCATCAGTTTTATACTGCATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

196

Amino Acids

21.52

Weight (kDa)

9.51

Isoelectric Point (pI)

25.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E2_bind	PF08825	84 - 173	5.1e-24	E2 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc16I	TGCGCA	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	548
AciI	CCGC	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	349, 432
AfaI	GTAC	3 cut(s)	356, 375, 463
AflII	CTTAAG	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	31, 118, 296, 520
AjnI	CCWGG	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	4 cut(s)	65, 95, 253, 289
AluI	AGCT	4 cut(s)	65, 95, 253, 289
Alw26I	GTCTC	2 cut(s)	414, 542
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	95, 554
ApoI	RAATTY	2 cut(s)	349, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspLEI	GCGC	3 cut(s)	106, 337, 367
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	19, 539
BbvI	GCAGC	2 cut(s)	82, 566
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	414, 542
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	3 cut(s)	96, 368, 555
BlsI	GCNGC	3 cut(s)	97, 369, 556
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	122, 134, 575
BsaJI	CCNNGG	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	381, 463
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	276, 488
BseNI	ACTGG	2 cut(s)	381, 463
BseXI	GCAGC	2 cut(s)	82, 566
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	414, 542
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	275, 489
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	381, 463
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	328, 363
BstDEI	CTNAG	3 cut(s)	35, 262, 497
BstF5I	GGATG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	3 cut(s)	106, 337, 367
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	2 cut(s)	414, 542
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 332, 367, 563
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	82, 566
BstXI	CCANNNNNNTGG	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	328, 363
CfoI	GCGC	3 cut(s)	106, 337, 367
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	355, 374, 462
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	5 cut(s)	65, 95, 234, 253, 289
CviKI_1	RGCY	5 cut(s)	65, 95, 234, 253, 289
CviQI	GTAC	3 cut(s)	355, 374, 462
DdeI	CTNAG	3 cut(s)	35, 262, 497
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	361
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	96, 368, 555
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	96, 368, 555
FspBI	CTAG	1 cut(s)	107
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	3 cut(s)	105, 336, 366
GluI	GCNGC	3 cut(s)	96, 368, 555
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	234
HhaI	GCGC	3 cut(s)	106, 337, 367
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	3 cut(s)	104, 335, 365
HinP1I	GCGC	3 cut(s)	104, 335, 365
HphI	GGTGA	2 cut(s)	19, 539
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	7 cut(s)	125, 135, 173, 274, 361, 554, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 332, 367, 563
HpyF3I	CTNAG	3 cut(s)	35, 262, 497
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	3 cut(s)	104, 335, 365
Kzo9I	GATC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	82, 566
LweI	GCATC	3 cut(s)	122, 134, 575
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	193, 265
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	4 cut(s)	61, 130, 308, 392
MluCI	AATT	4 cut(s)	308, 349, 432, 534
MnlI	CCTC	4 cut(s)	191, 271, 335, 518
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	2 cut(s)	130, 191
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	101, 332, 367, 563
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	193
NsbI	TGCGCA	1 cut(s)	336
NspI	RCATGY	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	191
PaqCI	CACCTGC	1 cut(s)	548
PkrI	GCNGC	3 cut(s)	97, 369, 556
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	3 cut(s)	356, 375, 463
RsaNI	GTAC	3 cut(s)	355, 374, 462
RseI	CAYNNNNRTG	2 cut(s)	130, 191
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	3 cut(s)	96, 368, 555
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	122, 134, 575
SfcI	CTRYAG	1 cut(s)	552
SmiMI	CAYNNNNRTG	2 cut(s)	130, 191
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	4 cut(s)	308, 349, 432, 534
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	149
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	4 cut(s)	308, 349, 432, 534
TatI	WGTACW	2 cut(s)	354, 373
TauI	GCSGC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	95, 554
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	349, 432
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.