RLG00000007900

NEDD8-activating enzyme E1 catalytic

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
22605249 .. 22608826
3578 bp
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UTR
Exon/CDS
Intron
RLM00000007900

Sequence Viewer

Length: 1353 bp
ATGGTGGAGTCTACGGTCCAGCAGAGCCGATCGAGGGACCTCGACAAGCTCCTCCTCCGACCCGGAAATCTCGTCGGACCCAACTTCGAACCCGGCCCAGGCCTCAGAGAAGACCTCAAGGAGTACGTCAGAGTGCTGGTGGTAGGCGCTGGCGGGTTGGGCTGTGAATTGCTCAAGGACTTGGCTTTGTCTGGCTTCCGCGAAATCGAAGTCATCGACATGGATCGCATTGAGGTCTCTAACCTCAATCGACAGTTTCTCTTCAGGCTTGAAGATGTGGGCAAGCCAAAGGCTGAGGTTGCTGCAAGACGAGTAATGCAAAGAGTTGCTGGGGTTAACATCGTTCCGCACTTCTGCCGGATTGAGGACAAGGAGCTTGACTTTTACAGCAATTTCAGCATCATTGCTCTCGGTCTCGATTCGATTGAAGCTAGGAGCTATATAAACTCTGTTGCTTGTAGCTTTCTTGAGTATGATGCTGATGATAAACCCCAAGAAGAAACTGTCAAACCTATGGTAGATGGTGGGACTGAAGGTTTTCAAGGACATGCCAGGGTCATTATGCCAGGGATCACTCCATGCTTTGAGTGTACTATCTGGCTTTTCCCCCCTCAAGTGAAGTTCCCTTTATGTACACTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGGATGAGGTACATAGTGGAGAGGCTTTTGATCCAGATGACCCTGAACATATGAAGTGGGTGTACGATGAGGCTAACAAGAGAGCTGAGCTGTTTGGTATTCCAGGAGTTACATTGTCTCTCACTCAGGGGGTTGTGAAGAACATCATACCGGCTATTGCTTCCACAAATGCGATTATATCAGCTGCCTGTGCACTAGAAACATTGAAAATTGCATCTGGATGTAGTAAAACTCTATCGAACTATCTAACGTATAATGGTGCAGAAGGCCTCCACACGAAAGTGACCGAGTTTGTCAGGGACAAAGACTGTCTTGTATGTGGCCCAGGTGTTCTTATTGAACTGGACACCTCAGTTACTTTGCAAAAGTTCATTGAGATACTTGAAGAACACCCTAAATTACTGTTGTCAAAAGCAAGCATTGCACATAGAGGGAAGAATTTGTACATGCAAGCGCCACCTGTACTGGAAGAGATGACCAGATCAAACTTAAGCAAGTCTCTCTATGACCTAATGGGTAAAATTCCCAAAGATGTTGTCCATGCGACCGGTACTACCAACAAGAACGACAAAAAGACTTCAGTTCTGAGAAAGTTACGAGTTGTTTTCAAGGAAGTTGATGGGATTACAGATATGGAGACTGCTGCAGGTGGGGCATGA

Protein Analysis

451

Amino Acids

49.69

Weight (kDa)

5.45

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiF PF00899 35 - 336 1.3e-58 ThiF family
E2_bind PF08825 345 - 434 3.7e-23 E2 binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1331
Acc36I ACCTGC 1 cut(s) 1331
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 153, 199, 347
AclWI GGATC 3 cut(s) 231, 578, 719
AcsI RAATTY 2 cut(s) 1132, 1215
AcuI CTGAAG 3 cut(s) 247, 552, 1257
AfaI GTAC 8 cut(s) 125, 592, 634, 705, 758, 1139, 1158, 1246
AfiI CCNNNNNNNGG 3 cut(s) 34, 98, 364
AflII CTTAAG 1 cut(s) 1183
AgeI ACCGGT 1 cut(s) 1241
AgsI TTSAA 8 cut(s) 272, 428, 542, 674, 901, 1034, 1079, 1303
AjnI CCWGG 5 cut(s) 97, 551, 565, 796, 1018
AleI CACNNNNGTG 1 cut(s) 974
AluBI AGCT 8 cut(s) 49, 376, 431, 438, 462, 779, 784, 878
AluI AGCT 8 cut(s) 49, 376, 431, 438, 462, 779, 784, 878
Alw21I GWGCWC 1 cut(s) 889
Alw26I GTCTC 5 cut(s) 241, 419, 816, 1197, 1325
Alw44I GTGCAC 1 cut(s) 885
AlwI GGATC 3 cut(s) 231, 578, 719
AoxI GGCC 4 cut(s) 94, 100, 961, 1015
ApaLI GTGCAC 1 cut(s) 885
ApeKI GCWGC 4 cut(s) 302, 659, 878, 1337
ApoI RAATTY 2 cut(s) 1132, 1215
ArsI GACNNNNNNTTYG 4 cut(s) 195, 227, 1215, 1247
AsiGI ACCGGT 1 cut(s) 1241
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 2 cut(s) 149, 1150
AspS9I GGNCC 5 cut(s) 16, 37, 77, 95, 1016
AsuC2I CCSGG 2 cut(s) 63, 93
AsuHPI GGTGA 1 cut(s) 674
AsuII TTCGAA 1 cut(s) 87
AvaII GGWCC 3 cut(s) 16, 37, 77
BaeGI GKGCMC 1 cut(s) 889
BarI GAAGNNNNNNTAC 4 cut(s) 740, 772, 1121, 1153
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 889
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 289, 646, 865, 1324
BccI CCATC 2 cut(s) 515, 1307
BciT130I CCWGG 5 cut(s) 99, 553, 567, 798, 1020
BcnI CCSGG 2 cut(s) 63, 93
BcoDI GTCTC 5 cut(s) 241, 419, 816, 1197, 1325
BfaI CTAG 3 cut(s) 432, 651, 890
BfmI CTRYAG 1 cut(s) 1338
BfoI RGCGCY 2 cut(s) 150, 1151
BfrI CTTAAG 1 cut(s) 1183
BfuAI ACCTGC 1 cut(s) 1331
BisI GCNGC 4 cut(s) 303, 660, 879, 1338
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 4 cut(s) 304, 661, 880, 1339
Bme1390I CCNGG 7 cut(s) 63, 93, 99, 553, 567, 798, 1020
Bme18I GGWCC 3 cut(s) 16, 37, 77
BmgT120I GGNCC 5 cut(s) 16, 37, 77, 95, 1016
BmiI GGNNCC 2 cut(s) 38, 79
BmrFI CCNGG 7 cut(s) 63, 93, 99, 553, 567, 798, 1020
BmsI GCATC 3 cut(s) 408, 466, 917
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 99, 131
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 4 cut(s) 101, 158, 488, 597
BpuMI CCSGG 2 cut(s) 63, 93
BsaI GGTCTC 2 cut(s) 241, 419
BsaJI CCNNGG 4 cut(s) 97, 552, 566, 1018
BsaWI WCCGGW 1 cut(s) 1241
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 98, 364
Bse118I RCCGGY 2 cut(s) 844, 1241
Bse1I ACTGG 2 cut(s) 1041, 1164
Bse3DI GCAATG 2 cut(s) 402, 1113
BseBI CCWGG 5 cut(s) 99, 553, 567, 798, 1020
BseDI CCNNGG 4 cut(s) 97, 552, 566, 1018
BseGI GGATG 2 cut(s) 703, 920
BseLI CCNNNNNNNGG 3 cut(s) 34, 98, 364
BseMI GCAATG 2 cut(s) 402, 1113
BseMII CTCAG 6 cut(s) 118, 285, 771, 833, 1059, 1271
BseNI ACTGG 2 cut(s) 1041, 1164
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 4 cut(s) 289, 646, 865, 1324
BseYI CCCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 2 cut(s) 32, 1242
BshFI GGCC 4 cut(s) 96, 102, 963, 1017
BshTI ACCGGT 1 cut(s) 1241
BsiEI CGRYCG 2 cut(s) 32, 1242
BsiHKAI GWGCWC 1 cut(s) 889
BsiSI CCGG 5 cut(s) 63, 93, 358, 845, 1242
BslFI GGGAC 3 cut(s) 50, 541, 1007
BslI CCNNNNNNNGG 3 cut(s) 34, 98, 364
BsmAI GTCTC 5 cut(s) 241, 419, 816, 1197, 1325
BsmFI GGGAC 3 cut(s) 50, 541, 1007
BsnI GGCC 4 cut(s) 96, 102, 963, 1017
Bso31I GGTCTC 2 cut(s) 241, 419
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 889
Bsp1407I TGTACA 2 cut(s) 632, 1137
Bsp143I GATC 5 cut(s) 29, 223, 570, 724, 1175
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 3 cut(s) 153, 199, 347
BspANI GGCC 4 cut(s) 96, 102, 963, 1017
BspCNI CTCAG 6 cut(s) 117, 286, 772, 832, 1058, 1272
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 38, 79
BspMAI CTGCAG 1 cut(s) 1342
BspMI ACCTGC 1 cut(s) 1331
BspPI GGATC 3 cut(s) 231, 578, 719
BspT104I TTCGAA 1 cut(s) 87
BspTI CTTAAG 1 cut(s) 1183
BspTNI GGTCTC 2 cut(s) 241, 419
BsrDI GCAATG 2 cut(s) 402, 1113
BsrFI RCCGGY 2 cut(s) 844, 1241
BsrGI TGTACA 2 cut(s) 632, 1137
BsrI ACTGG 2 cut(s) 1041, 1164
BssAI RCCGGY 2 cut(s) 844, 1241
BssECI CCNNGG 4 cut(s) 97, 552, 566, 1018
BssMI GATC 5 cut(s) 29, 223, 570, 724, 1175
Bst2UI CCWGG 5 cut(s) 99, 553, 567, 798, 1020
Bst4CI ACNGT 5 cut(s) 16, 255, 505, 1004, 1098
Bst6I CTCTTC 2 cut(s) 266, 1158
BstAFI CTTAAG 1 cut(s) 1183
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstAUI TGTACA 2 cut(s) 632, 1137
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 4 cut(s) 151, 284, 1111, 1146
BstDEI CTNAG 6 cut(s) 104, 294, 780, 819, 1045, 1280
BstF5I GGATG 2 cut(s) 703, 920
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 2 cut(s) 150, 1151
BstHHI GCGC 2 cut(s) 149, 1150
BstKTI GATC 5 cut(s) 32, 226, 573, 727, 1178
BstMAI GTCTC 5 cut(s) 241, 419, 816, 1197, 1325
BstMBI GATC 5 cut(s) 29, 223, 570, 724, 1175
BstMCI CGRYCG 2 cut(s) 32, 1242
BstMWI GCNNNNNNNGC 6 cut(s) 159, 299, 396, 884, 1115, 1346
BstNI CCWGG 5 cut(s) 99, 553, 567, 798, 1020
BstNSI RCATGY 2 cut(s) 551, 1144
BstSCI CCNGG 7 cut(s) 61, 91, 97, 551, 565, 796, 1018
BstSFI CTRYAG 1 cut(s) 1338
BstSLI GKGCMC 1 cut(s) 889
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 289, 646, 865, 1324
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 4 cut(s) 96, 102, 963, 1017
BtsCI GGATG 2 cut(s) 703, 920
BveI ACCTGC 1 cut(s) 1331
Cac8I GCNNGC 4 cut(s) 151, 284, 1111, 1146
CfoI GCGC 2 cut(s) 149, 1150
Cfr10I RCCGGY 2 cut(s) 844, 1241
Cfr13I GGNCC 5 cut(s) 16, 37, 77, 95, 1016
Csp6I GTAC 8 cut(s) 124, 591, 633, 704, 757, 1138, 1157, 1245
CspAI ACCGGT 1 cut(s) 1241
CviAII CATG 6 cut(s) 220, 548, 579, 1141, 1235, 1350
CviQI GTAC 8 cut(s) 124, 591, 633, 704, 757, 1138, 1157, 1245
DdeI CTNAG 6 cut(s) 104, 294, 780, 819, 1045, 1280
DpnI GATC 5 cut(s) 31, 225, 572, 726, 1177
DpnII GATC 5 cut(s) 29, 223, 570, 724, 1175
Eam1104I CTCTTC 2 cut(s) 266, 1158
EarI CTCTTC 2 cut(s) 266, 1158
Eco147I AGGCCT 2 cut(s) 102, 963
Eco31I GGTCTC 2 cut(s) 241, 419
Eco47I GGWCC 3 cut(s) 16, 37, 77
Eco57I CTGAAG 3 cut(s) 247, 552, 1257
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 5 cut(s) 97, 551, 565, 796, 1018
FaeI CATG 6 cut(s) 223, 551, 582, 1144, 1238, 1353
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 3 cut(s) 50, 541, 1007
FatI CATG 6 cut(s) 219, 547, 578, 1140, 1234, 1349
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 744
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 4 cut(s) 303, 660, 879, 1338
FokI GGATG 2 cut(s) 710, 927
Fsp4HI GCNGC 4 cut(s) 303, 660, 879, 1338
FspBI CTAG 3 cut(s) 432, 651, 890
GlaI GCGC 2 cut(s) 148, 1149
GluI GCNGC 4 cut(s) 303, 660, 879, 1338
GsaI CCCAGC 1 cut(s) 333
HaeII RGCGCY 2 cut(s) 150, 1151
HaeIII GGCC 4 cut(s) 96, 102, 963, 1017
HapII CCGG 5 cut(s) 63, 93, 358, 845, 1242
HhaI GCGC 2 cut(s) 149, 1150
Hin1II CATG 6 cut(s) 223, 551, 582, 1144, 1238, 1353
Hin6I GCGC 2 cut(s) 147, 1148
HinP1I GCGC 2 cut(s) 147, 1148
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 2 cut(s) 8, 419
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 5 cut(s) 63, 93, 358, 845, 1242
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 6 cut(s) 12, 337, 591, 635, 757, 887
Hpy188I TCNGA 5 cut(s) 59, 77, 107, 131, 1281
Hpy188III TCNNGA 4 cut(s) 416, 467, 728, 912
Hpy8I GTNNAC 6 cut(s) 12, 337, 591, 635, 757, 887
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 527, 953
HpyCH4III ACNGT 5 cut(s) 16, 255, 505, 1004, 1098
HpyCH4IV ACGT 2 cut(s) 126, 944
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 299, 396, 884, 1115, 1346
HpyF3I CTNAG 6 cut(s) 104, 294, 780, 819, 1045, 1280
HpySE526I ACGT 2 cut(s) 126, 944
Hsp92II CATG 6 cut(s) 223, 551, 582, 1144, 1238, 1353
HspAI GCGC 2 cut(s) 147, 1148
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 5 cut(s) 29, 223, 570, 724, 1175
LmnI GCTCC 3 cut(s) 54, 373, 435
Lsp1109I GCAGC 4 cut(s) 289, 646, 865, 1324
LweI GCATC 3 cut(s) 408, 466, 917
MaeI CTAG 3 cut(s) 432, 651, 890
MaeII ACGT 2 cut(s) 126, 944
MaeIII GTNAC 4 cut(s) 802, 976, 1048, 1287
MalI GATC 5 cut(s) 31, 225, 572, 726, 1177
MboI GATC 5 cut(s) 29, 223, 570, 724, 1175
MboII GAAGA 8 cut(s) 122, 253, 284, 509, 844, 1091, 1141, 1175
MhlI GDGCHC 1 cut(s) 889
MluCI AATT 7 cut(s) 167, 391, 687, 903, 1091, 1132, 1215
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 55, 82
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 3 cut(s) 336, 690, 1184
MslI CAYNNNNRTG 3 cut(s) 218, 913, 974
MspA1I CMGCKG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 1183
MspI CCGG 5 cut(s) 63, 93, 358, 845, 1242
MspR9I CCNGG 7 cut(s) 63, 93, 99, 553, 567, 798, 1020
MvaI CCWGG 5 cut(s) 99, 553, 567, 798, 1020
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 6 cut(s) 159, 299, 396, 884, 1115, 1346
NciI CCSGG 2 cut(s) 63, 93
NdeI CATATG 1 cut(s) 744
NdeII GATC 5 cut(s) 29, 223, 570, 724, 1175
NlaIII CATG 6 cut(s) 223, 551, 582, 1144, 1238, 1353
NlaIV GGNNCC 2 cut(s) 38, 79
NmuCI GTSAC 1 cut(s) 976
NspI RCATGY 2 cut(s) 551, 1144
NspV TTCGAA 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 974
PaqCI CACCTGC 1 cut(s) 1331
PceI AGGCCT 2 cut(s) 102, 963
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 419
PfoI TCCNGGA 1 cut(s) 796
PinAI ACCGGT 1 cut(s) 1241
PkrI GCNGC 4 cut(s) 304, 661, 880, 1339
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 5 cut(s) 97, 551, 565, 796, 1018
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 5 cut(s) 97, 551, 565, 796, 1018
PspN4I GGNNCC 2 cut(s) 38, 79
PspPI GGNCC 5 cut(s) 16, 37, 77, 95, 1016
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 1 cut(s) 1342
PvuI CGATCG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 8 cut(s) 125, 592, 634, 705, 758, 1139, 1158, 1246
RsaNI GTAC 8 cut(s) 124, 591, 633, 704, 757, 1138, 1157, 1245
RseI CAYNNNNRTG 3 cut(s) 218, 913, 974
SaqAI TTAA 3 cut(s) 336, 690, 1184
SatI GCNGC 4 cut(s) 303, 660, 879, 1338
Sau3AI GATC 5 cut(s) 29, 223, 570, 724, 1175
Sau96I GGNCC 5 cut(s) 16, 37, 77, 95, 1016
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 7 cut(s) 63, 93, 99, 553, 567, 798, 1020
SduI GDGCHC 1 cut(s) 889
SfaNI GCATC 3 cut(s) 408, 466, 917
SfcI CTRYAG 1 cut(s) 1338
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 3 cut(s) 16, 37, 77
SmiMI CAYNNNNRTG 3 cut(s) 218, 913, 974
SmlI CTYRAG 5 cut(s) 116, 173, 467, 612, 1183
SmoI CTYRAG 5 cut(s) 116, 173, 467, 612, 1183
Sse9I AATT 7 cut(s) 167, 391, 687, 903, 1091, 1132, 1215
SseBI AGGCCT 2 cut(s) 102, 963
SsiI CCGC 3 cut(s) 153, 199, 347
SspMI CTAG 3 cut(s) 432, 651, 890
StuI AGGCCT 2 cut(s) 102, 963
StyD4I CCNGG 7 cut(s) 61, 91, 97, 551, 565, 796, 1018
TaaI ACNGT 5 cut(s) 16, 255, 505, 1004, 1098
TaiI ACGT 2 cut(s) 129, 947
TaqI TCGA 9 cut(s) 32, 42, 87, 207, 216, 250, 417, 422, 932
TaqII GACCGA 2 cut(s) 401, 995
TasI AATT 7 cut(s) 167, 391, 687, 903, 1091, 1132, 1215
TatI WGTACW 4 cut(s) 590, 632, 1137, 1156
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 3 cut(s) 336, 690, 1184
Tru9I TTAA 3 cut(s) 336, 690, 1184
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 4 cut(s) 302, 659, 878, 1337
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 2 cut(s) 761, 1054
Vha464I CTTAAG 1 cut(s) 1183
VneI GTGCAC 1 cut(s) 885
VpaK11BI GGWCC 3 cut(s) 16, 37, 77
XapI RAATTY 2 cut(s) 1132, 1215
XceI RCATGY 2 cut(s) 551, 1144
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 432, 651, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.