Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

30857662 .. 30858456

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGTATTGGTGCAAAAGGTATAATGGTGCAGAAGGCCTCCACACGAAAGTGACCGAGTTTGTCAGGGACAAAGACTGTCTTGTATGTGGCCTAGGTGTTCTTATTGAGCTGGACACCTCAGTTACTTTGCAAAAGTTCATTGAGCTACTTGAAGAACACCCTAAATTGCTGTTGTCAAAAGCAAGCATTGCGCATAGACGGAAGAATTTGTACATGCAAGCGCCACCTGTACTGGAAGAGATGACCAGATCAAACTTAAGCAAGTCTCTCTATGACCTAATGGGTAAAATTCCCAAAGATGTTGTCCATGCGACTGGTACTACCAACAAGAATGACAAAAAGACTTCGGTTCTGAGAAAGTTACGAGTTGTTTTCAAGGGAGGTGATAGAATTACAGAGATGGAGACTGCAGCAGGTGAGGCATCAGTTTTATACTGCATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

9.16

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E2_bind	PF08825	37 - 126	6.2e-24	E2 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc16I	TGCGCA	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	208, 291
AfaI	GTAC	3 cut(s)	215, 234, 322
AflII	CTTAAG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	155, 379
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	112, 148
AluI	AGCT	2 cut(s)	112, 148
Alw26I	GTCTC	2 cut(s)	273, 401
AoxI	GGCC	2 cut(s)	37, 91
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	208, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspA2I	CCTAGG	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	196, 226
AsuHPI	GGTGA	2 cut(s)	398, 431
AvrII	CCTAGG	1 cut(s)	94
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	273, 401
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	1 cut(s)	414
BlnI	CCTAGG	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	415
BmsI	GCATC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	240, 322
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	135, 347
BseNI	ACTGG	2 cut(s)	240, 322
BseXI	GCAGC	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	39, 93
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	273, 401
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	39, 93
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	39, 93
BspCNI	CTCAG	2 cut(s)	134, 348
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	407
BspTI	CTTAAG	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	240, 322
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	187, 222
BstDEI	CTNAG	2 cut(s)	121, 356
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	196, 226
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	273, 401
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 422
BstNSI	RCATGY	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	39, 93
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	187, 222
CfoI	GCGC	2 cut(s)	196, 226
Csp6I	GTAC	3 cut(s)	214, 233, 321
CviAII	CATG	2 cut(s)	217, 311
CviJI	RGCY	4 cut(s)	39, 93, 112, 148
CviKI_1	RGCY	4 cut(s)	39, 93, 112, 148
CviQI	GTAC	3 cut(s)	214, 233, 321
DdeI	CTNAG	2 cut(s)	121, 356
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	220, 314
FaiI	YATR	7 cut(s)	24, 88, 198, 218, 276, 312, 436
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	216, 310
Fnu4HI	GCNGC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	2 cut(s)	195, 225
GluI	GCNGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	39, 93
HhaI	GCGC	2 cut(s)	196, 226
Hin1II	CATG	2 cut(s)	220, 314
Hin6I	GCGC	2 cut(s)	194, 224
HinP1I	GCGC	2 cut(s)	194, 224
HphI	GGTGA	2 cut(s)	398, 431
Hpy188I	TCNGA	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	6 cut(s)	15, 32, 133, 220, 413, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 422
HpyF3I	CTNAG	2 cut(s)	121, 356
Hsp92II	CATG	2 cut(s)	220, 314
HspAI	GCGC	2 cut(s)	194, 224
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	7 cut(s)	52, 98, 221, 243, 262, 303, 402
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	3 cut(s)	52, 124, 363
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	3 cut(s)	167, 217, 251
MluCI	AATT	4 cut(s)	167, 208, 291, 393
MnlI	CCTC	4 cut(s)	50, 130, 377, 415
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	191, 422
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	220, 314
NmuCI	GTSAC	1 cut(s)	52
NsbI	TGCGCA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	50
PaqCI	CACCTGC	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	415
RsaI	GTAC	3 cut(s)	215, 234, 322
RsaNI	GTAC	3 cut(s)	214, 233, 321
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	1 cut(s)	251
SetI	ASST	9 cut(s)	23, 100, 114, 122, 150, 232, 282, 388, 421
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	4 cut(s)	167, 208, 291, 393
SseBI	AGGCCT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	80
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	4 cut(s)	167, 208, 291, 393
TatI	WGTACW	2 cut(s)	213, 232
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	17, 130
TspGWI	ACGGA	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	259
XapI	RAATTY	2 cut(s)	208, 291
XceI	RCATGY	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.