Rh4BG080000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
13996998 .. 13997330
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG080000.1

Sequence Viewer

Length: 333 bp
ATGGTTAATTGGTATATGTGTGGCTTCCTCTTGTCCCGCGTATATATTGATGGTGATGGAGACAATTGGTATTTACAATTTGACAATTCCAATGTCCAAAGCAGTCTATGGAAAAATTTACTGATTTTTTTGGCATATTACAGAGTCAATATTCTTTGTTGTTTTCTTTCCATTGCACCTACCTTCAAGTTTTGTAATCAATCCAATACTCATCTTATTGCTTTGCTAGTTTTGTTTCCAGAGGTTGCTCTTTGTGCGGCTATTGTAGCTAATCTCAACATAAAGAGTTGTATACTTTGCATGATTGATCATTATACAAGTCCAGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.66

Weight (kDa)

5.36

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 37, 257
AcsI RAATTY 1 cut(s) 115
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 65
BccI CCATC 2 cut(s) 44, 50
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 37, 257
BspFNI CGCG 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 171
BssMI GATC 1 cut(s) 307
BssNAI GTATAC 1 cut(s) 293
Bst1107I GTATAC 1 cut(s) 293
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 254, 266
BstUI CGCG 1 cut(s) 39
BstZ17I GTATAC 1 cut(s) 293
CviAII CATG 1 cut(s) 301
CviJI RGCY 3 cut(s) 24, 260, 269
CviKI_1 RGCY 3 cut(s) 24, 260, 269
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
FaeI CATG 1 cut(s) 304
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 304
HinfI GANTC 1 cut(s) 144
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 293
Hpy188III TCNNGA 2 cut(s) 239, 323
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 176, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 266
Hsp92II CATG 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 1 cut(s) 252
MaeI CTAG 1 cut(s) 227
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MfeI CAATTG 1 cut(s) 64
MluCI AATT 5 cut(s) 7, 64, 77, 85, 115
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 2 cut(s) 38, 235
MseI TTAA 1 cut(s) 6
MunI CAATTG 1 cut(s) 64
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 254, 266
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 304
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 153
SetI ASST 4 cut(s) 181, 185, 246, 271
SgeI CNNG 7 cut(s) 43, 48, 50, 199, 239, 251, 313
Sse9I AATT 5 cut(s) 7, 64, 77, 85, 115
SsiI CCGC 2 cut(s) 37, 257
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 227
TasI AATT 5 cut(s) 7, 64, 77, 85, 115
TauI GCSGC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
XapI RAATTY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.