Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Forward (+)

11600141 .. 11600350

Gene Structure 210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCAGGCTCCACCTATACTGGAAGAGAAGACCAGATCAAATCTAAGCGTACCACTTTTTGAGCTAATGGGTGAAGTTCCGAAGGATGTTGTCCACGCGACCGGTACAACCACAAAGAATGACAAAAAAACTTCGTGTCTGAGAAAGTTGCATGTTATTTTCAAAGGAGTGGATGGGATCACAGATATGGATCCAGCAGGAGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

70

Amino Acids

7.52

Weight (kDa)

6.05

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E2_bind	PF08825	1 - 53	2.5e-07	E2 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AclWI	GGATC	3 cut(s)	185, 185, 198
AfaI	GTAC	2 cut(s)	51, 106
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	3 cut(s)	185, 185, 198
AsiGI	ACCGGT	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	35
BccI	CCATC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	9, 192
BpiI	GAAGAC	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	189
BseGI	GGATG	2 cut(s)	91, 178
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	35, 177, 190
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	9, 192
BspPI	GGATC	3 cut(s)	185, 185, 198
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	3 cut(s)	35, 177, 190
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	44, 140
BstF5I	GGATG	2 cut(s)	91, 178
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	38, 180, 193
BstMBI	GATC	3 cut(s)	35, 177, 190
BstMCI	CGRYCG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	155
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	91, 178
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	50, 105
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	2 cut(s)	152, 207
CviJI	RGCY	2 cut(s)	8, 64
CviKI_1	RGCY	2 cut(s)	8, 64
CviQI	GTAC	2 cut(s)	50, 105
DdeI	CTNAG	2 cut(s)	44, 140
DpnI	GATC	3 cut(s)	37, 179, 192
DpnII	GATC	3 cut(s)	35, 177, 190
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
FaeI	CATG	2 cut(s)	155, 210
FaiI	YATR	4 cut(s)	17, 153, 188, 208
FatI	CATG	2 cut(s)	151, 206
FokI	GGATG	2 cut(s)	98, 185
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	155, 210
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	81, 141
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	4, 151
HpyF3I	CTNAG	2 cut(s)	44, 140
Hsp92II	CATG	2 cut(s)	155, 210
Kzo9I	GATC	3 cut(s)	35, 177, 190
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	5, 46, 115, 183
MalI	GATC	3 cut(s)	37, 179, 192
MboI	GATC	3 cut(s)	35, 177, 190
MboII	GAAGA	2 cut(s)	35, 40
MflI	RGATCY	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	98
NdeII	GATC	3 cut(s)	35, 177, 190
NlaIII	CATG	2 cut(s)	155, 210
NlaIV	GGNNCC	2 cut(s)	9, 192
NspI	RCATGY	1 cut(s)	155
PagI	TCATGA	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	9, 192
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	51, 106
RsaNI	GTAC	2 cut(s)	50, 105
RseI	CAYNNNNRTG	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	35, 177, 190
SetI	ASST	2 cut(s)	16, 66
SgeI	CNNG	9 cut(s)	17, 32, 45, 107, 109, 114, 147, 164, 206
SmiMI	CAYNNNNRTG	1 cut(s)	185
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.