Prupe.1G153200_v2.0.a1

NEDD8-activating enzyme E1 catalytic

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
12083686 .. 12088133
4448 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G153200.2

Sequence Viewer

Length: 1353 bp
ATGGCAGCAGAACCCACTGCCCAAGAGAGCCGATCGAGGGACCTCGACAAGCTCCTCCTCCGACCCGGCAATCTCGTCGGACCCAACTTCGAACCCGGTCCCGCACTGAGAGACGACCTCAAAGAATACGGGAGAGTGTTGGTGGTTGGGGCTGGTGGGTTGGGCTGTGAACTGCTCAAGGACTTGGCTTTATCTGGTTTTCGAAAACTTGAGGTTATAGACATGGATCGCATCGAGGTTTCTAATCTCAATCGCCAGTTCCTTTTCAGACTTGAAGATGTAGGTAAGCCAAAGGCTGAGGTGGCTGCAAAACGTGTCATGGAAAGAGTTAGTGGTGTAAATATTGTTCCACATTTTTGCCGGATTGAGGACAAAGAGCTTGAATTTTATAGCAAATTCAGCATTATTGCCCTCGGTCTTGATTCCATTGAGGCTCGGAGCTACATAAATTCTGTTGCTTGTAGTTTTCTTGAGTATGATTCTGATGATAGTGCACTGGAAGAAACAAGCAAACCTATGGTAGATGGTGGGACTGAAGGTTTTCAGGGACATGCTAGGGTCATTGTGCCAGGGGTCACTCCGTGCTTTGAGTGCACCATCTGGCTTTTTCCACCTCAAGTGAAGTTCCCTCTATGCACCCTTGCAGAAACACCTAGAACTGCTGCTCATTGTATTGAATATGCTCACTTAATTAAATGGGATGAGGTGCATAGCGGTAAGGCTTTTGATCCAGATGATCCAGAGCATATGAAGTGGGTCTACAACGAGGCTACCAAGAGAGCTGAGCTTTTCGGTATTCCCGGAGTTACATATTCCCTTACTCAGGGTGTTGTGAAGAACATCATACCAGCTATTGCTTCCACAAATGCGATTATATCAGCTGCATGTGTGCTAGAAACATTGAAGATTGCATCGGGATGCAGCAAAACCCTGTCAAACTATTTAACGTATAATGGTGCAGAAGGTCTCCACACTGAAGTGACTGAATTTGTGAAGGACAAAGACTGTCTTGTATGCGGCCCAGGTGTTCTTATTCAGCTGGACACCTCAATTACTTTGGAAAAGTTCATTGATCTACTTAAAGAGCACCCTAAATTGCTATTGTCGAAAGCAAGCATCACACATAGAGGGAAGAGTCTGTACATGCAGGCGCCACCTGTACTAGAAGAGATGACCAGATCAAACCTAAGCATACCACTTTTTGATCTAATCGGTAAGATTCCCAAAGATGTTGTCCATGCGATTGGTACAACCACTAAGAACGACAAGAAAACTTCATGTCTGAGAAAGCTACGAGTTGTTTTCAAGGGAGTTGATGGGATTGCAGATATGGATACAGCAGGCGAGACATAA

Protein Analysis

451

Amino Acids

49.49

Weight (kDa)

5.6

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1150
AccI GTMKAC 1 cut(s) 759
AciI CCGC 3 cut(s) 102, 714, 1017
AclWI GGATC 3 cut(s) 234, 722, 731
AcsI RAATTY 4 cut(s) 383, 395, 448, 986
AcuI CTGAAG 2 cut(s) 555, 996
AcyI GRCGYC 1 cut(s) 1151
AdeI CACNNNGTG 1 cut(s) 582
AfaI GTAC 3 cut(s) 1142, 1161, 1249
AfiI CCNNNNNNNGG 3 cut(s) 37, 367, 823
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 5 cut(s) 275, 383, 677, 904, 1306
AjnI CCWGG 2 cut(s) 568, 1021
AleI CACNNNNGTG 1 cut(s) 977
AluBI AGCT 9 cut(s) 52, 379, 441, 782, 787, 851, 881, 1039, 1291
AluI AGCT 9 cut(s) 52, 379, 441, 782, 787, 851, 881, 1039, 1291
Alw21I GWGCWC 3 cut(s) 496, 596, 1089
Alw26I GTCTC 3 cut(s) 105, 971, 1340
Alw44I GTGCAC 2 cut(s) 492, 592
AlwI GGATC 3 cut(s) 234, 722, 731
AoxI GGCC 1 cut(s) 1018
ApaLI GTGCAC 2 cut(s) 492, 592
ApeKI GCWGC 5 cut(s) 5, 305, 662, 881, 921
ApoI RAATTY 4 cut(s) 383, 395, 448, 986
ArsI GACNNNNNNTTYG 2 cut(s) 1218, 1250
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 1153
AspS9I GGNCC 4 cut(s) 40, 80, 98, 1019
AsuC2I CCSGG 3 cut(s) 66, 96, 801
AsuII TTCGAA 2 cut(s) 90, 202
AvaII GGWCC 3 cut(s) 40, 80, 98
BaeGI GKGCMC 2 cut(s) 496, 596
BanI GGYRCC 1 cut(s) 1150
BarI GAAGNNNNNNTAC 4 cut(s) 743, 775, 1124, 1156
Bbv12I GWGCWC 3 cut(s) 496, 596, 1089
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 5 cut(s) 17, 292, 649, 868, 933
BccI CCATC 3 cut(s) 518, 605, 1310
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 2 cut(s) 570, 1023
BciVI GTATCC 1 cut(s) 1327
BcnI CCSGG 3 cut(s) 66, 96, 801
BcoDI GTCTC 3 cut(s) 105, 971, 1340
BfaI CTAG 4 cut(s) 555, 654, 893, 1163
BfoI RGCGCY 1 cut(s) 1154
BfuI GTATCC 1 cut(s) 1327
BisI GCNGC 6 cut(s) 6, 306, 663, 882, 922, 1018
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 6 cut(s) 7, 307, 664, 883, 923, 1019
Bme1390I CCNGG 5 cut(s) 66, 96, 570, 801, 1023
Bme18I GGWCC 3 cut(s) 40, 80, 98
BmgT120I GGNCC 4 cut(s) 40, 80, 98, 1019
BmiI GGNNCC 4 cut(s) 41, 82, 100, 1152
BmrFI CCNGG 5 cut(s) 66, 96, 570, 801, 1023
BmsI GCATC 4 cut(s) 240, 908, 920, 1125
BplI GAGNNNNNCTC 2 cut(s) 102, 134
Bpu10I CCTNAGC 2 cut(s) 297, 1187
Bpu1102I GCTNAGC 1 cut(s) 783
Bpu14I TTCGAA 2 cut(s) 90, 202
BpuEI CTTGAG 4 cut(s) 161, 230, 491, 600
BpuMI CCSGG 3 cut(s) 66, 96, 801
BsaHI GRCGYC 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 3 cut(s) 412, 569, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 367, 823
Bse1I ACTGG 2 cut(s) 256, 501
BseBI CCWGG 2 cut(s) 570, 1023
BseDI CCNNGG 3 cut(s) 412, 569, 1021
BseGI GGATG 2 cut(s) 706, 923
BseLI CCNNNNNNNGG 3 cut(s) 37, 367, 823
BseMII CTCAG 5 cut(s) 98, 288, 774, 836, 1274
BseNI ACTGG 2 cut(s) 256, 501
BseRI GAGGAG 2 cut(s) 44, 47
BseSI GKGCMC 2 cut(s) 496, 596
BseXI GCAGC 5 cut(s) 17, 292, 649, 868, 933
BsgI GTGCAG 1 cut(s) 978
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 1020
BshNI GGYRCC 1 cut(s) 1150
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 496, 596, 1089
BsiSI CCGG 4 cut(s) 66, 96, 361, 801
BslFI GGGAC 4 cut(s) 53, 84, 544, 561
BslI CCNNNNNNNGG 3 cut(s) 37, 367, 823
BsmAI GTCTC 3 cut(s) 105, 971, 1340
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 4 cut(s) 53, 84, 544, 561
BsnI GGCC 1 cut(s) 1020
Bso31I GGTCTC 1 cut(s) 971
Bsp119I TTCGAA 2 cut(s) 90, 202
Bsp1286I GDGCHC 3 cut(s) 496, 596, 1089
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
Bsp1720I GCTNAGC 1 cut(s) 783
BspACI CCGC 3 cut(s) 102, 714, 1017
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 5 cut(s) 99, 289, 775, 835, 1275
BspLI GGNNCC 4 cut(s) 41, 82, 100, 1152
BspPI GGATC 3 cut(s) 234, 722, 731
BspT104I TTCGAA 2 cut(s) 90, 202
BspT107I GGYRCC 1 cut(s) 1150
BspTNI GGTCTC 1 cut(s) 971
BsrGI TGTACA 1 cut(s) 1140
BsrI ACTGG 2 cut(s) 256, 501
BssECI CCNNGG 3 cut(s) 412, 569, 1021
BssMI GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
BssNI GRCGYC 1 cut(s) 1151
Bst2UI CCWGG 2 cut(s) 570, 1023
Bst4CI ACNGT 1 cut(s) 1007
Bst6I CTCTTC 2 cut(s) 1127, 1161
BstACI GRCGYC 1 cut(s) 1151
BstAUI TGTACA 1 cut(s) 1140
BstBI TTCGAA 2 cut(s) 90, 202
BstC8I GCNNGC 3 cut(s) 1114, 1149, 1342
BstDEI CTNAG 7 cut(s) 107, 297, 783, 822, 1187, 1257, 1283
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 2 cut(s) 706, 923
BstH2I RGCGCY 1 cut(s) 1154
BstHHI GCGC 1 cut(s) 1153
BstKTI GATC 7 cut(s) 35, 229, 730, 739, 1075, 1181, 1207
BstMAI GTCTC 3 cut(s) 105, 971, 1340
BstMBI GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 302, 399, 591
BstNI CCWGG 2 cut(s) 570, 1023
BstNSI RCATGY 3 cut(s) 554, 888, 1147
BstSCI CCNGG 5 cut(s) 64, 94, 568, 799, 1021
BstSLI GKGCMC 2 cut(s) 496, 596
BstV1I GCAGC 5 cut(s) 17, 292, 649, 868, 933
BstXI CCANNNNNNTGG 1 cut(s) 1244
BsuI GTATCC 1 cut(s) 1327
BsuRI GGCC 1 cut(s) 1020
BtsCI GGATG 2 cut(s) 706, 923
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 4 cut(s) 15, 104, 494, 972
Cac8I GCNNGC 3 cut(s) 1114, 1149, 1342
CfoI GCGC 1 cut(s) 1153
Cfr13I GGNCC 4 cut(s) 40, 80, 98, 1019
Csp6I GTAC 3 cut(s) 1141, 1160, 1248
CviAII CATG 7 cut(s) 223, 319, 551, 885, 1144, 1238, 1278
CviQI GTAC 3 cut(s) 1141, 1160, 1248
DdeI CTNAG 7 cut(s) 107, 297, 783, 822, 1187, 1257, 1283
DinI GGCGCC 1 cut(s) 1152
DpnI GATC 7 cut(s) 34, 228, 729, 738, 1074, 1180, 1206
DpnII GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
DraIII CACNNNGTG 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 1127, 1161
EarI CTCTTC 2 cut(s) 1127, 1161
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 3 cut(s) 40, 80, 98
Eco57I CTGAAG 2 cut(s) 555, 996
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 568, 1021
EgeI GGCGCC 1 cut(s) 1152
EheI GGCGCC 1 cut(s) 1152
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 7 cut(s) 226, 322, 554, 888, 1147, 1241, 1281
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FaqI GGGAC 4 cut(s) 53, 84, 544, 561
FatI CATG 7 cut(s) 222, 318, 550, 884, 1143, 1237, 1277
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 747
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 6 cut(s) 6, 306, 663, 882, 922, 1018
FokI GGATG 2 cut(s) 713, 930
Fsp4HI GCNGC 6 cut(s) 6, 306, 663, 882, 922, 1018
FspBI CTAG 4 cut(s) 555, 654, 893, 1163
GlaI GCGC 1 cut(s) 1152
GluI GCNGC 6 cut(s) 6, 306, 663, 882, 922, 1018
HaeII RGCGCY 1 cut(s) 1154
HaeIII GGCC 1 cut(s) 1020
HapII CCGG 4 cut(s) 66, 96, 361, 801
HhaI GCGC 1 cut(s) 1153
Hin1I GRCGYC 1 cut(s) 1151
Hin1II CATG 7 cut(s) 226, 322, 554, 888, 1147, 1241, 1281
Hin6I GCGC 1 cut(s) 1151
HinP1I GCGC 1 cut(s) 1151
HinfI GANTC 4 cut(s) 422, 479, 1135, 1219
HpaII CCGG 4 cut(s) 66, 96, 361, 801
Hpy166II GTNNAC 4 cut(s) 170, 494, 594, 760
Hpy188I TCNGA 6 cut(s) 62, 80, 269, 438, 484, 1284
Hpy188III TCNNGA 5 cut(s) 419, 470, 731, 740, 915
Hpy8I GTNNAC 4 cut(s) 170, 494, 594, 760
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 530, 956, 988
HpyCH4III ACNGT 1 cut(s) 1007
HpyCH4IV ACGT 2 cut(s) 313, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 399, 591
HpyF3I CTNAG 7 cut(s) 107, 297, 783, 822, 1187, 1257, 1283
HpySE526I ACGT 2 cut(s) 313, 947
Hsp92I GRCGYC 1 cut(s) 1151
Hsp92II CATG 7 cut(s) 226, 322, 554, 888, 1147, 1241, 1281
HspAI GCGC 1 cut(s) 1151
KasI GGCGCC 1 cut(s) 1150
Kzo9I GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
LmnI GCTCC 2 cut(s) 57, 438
Lsp1109I GCAGC 5 cut(s) 17, 292, 649, 868, 933
LweI GCATC 4 cut(s) 240, 908, 920, 1125
MaeI CTAG 4 cut(s) 555, 654, 893, 1163
MaeII ACGT 2 cut(s) 313, 947
MaeIII GTNAC 3 cut(s) 574, 805, 979
MalI GATC 7 cut(s) 34, 228, 729, 738, 1074, 1180, 1206
MboI GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
MboII GAAGA 6 cut(s) 287, 512, 847, 916, 1144, 1178
MhlI GDGCHC 3 cut(s) 496, 596, 1089
MluCI AATT 7 cut(s) 383, 395, 448, 690, 986, 1050, 1094
Mly113I GGCGCC 1 cut(s) 1151
MlyI GAGTC 1 cut(s) 1144
MmeI TCCRAC 2 cut(s) 58, 85
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 4 cut(s) 689, 693, 944, 1080
MslI CAYNNNNRTG 2 cut(s) 916, 977
MspA1I CMGCKG 2 cut(s) 881, 1039
MspI CCGG 4 cut(s) 66, 96, 361, 801
MspR9I CCNGG 5 cut(s) 66, 96, 570, 801, 1023
MvaI CCWGG 2 cut(s) 570, 1023
MwoI GCNNNNNNNGC 3 cut(s) 302, 399, 591
NarI GGCGCC 1 cut(s) 1151
NciI CCSGG 3 cut(s) 66, 96, 801
NdeI CATATG 1 cut(s) 747
NdeII GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
NlaIII CATG 7 cut(s) 226, 322, 554, 888, 1147, 1241, 1281
NlaIV GGNNCC 4 cut(s) 41, 82, 100, 1152
NmuCI GTSAC 2 cut(s) 574, 979
NspI RCATGY 3 cut(s) 554, 888, 1147
NspV TTCGAA 2 cut(s) 90, 202
OliI CACNNNNGTG 1 cut(s) 977
PacI TTAATTAA 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 422, 479, 1219
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 6 cut(s) 7, 307, 664, 883, 923, 1019
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 1 cut(s) 1143
PluTI GGCGCC 1 cut(s) 1154
PpsI GAGTC 1 cut(s) 1143
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 568, 1021
PspGI CCWGG 2 cut(s) 568, 1021
PspN4I GGNNCC 4 cut(s) 41, 82, 100, 1152
PspPI GGNCC 4 cut(s) 40, 80, 98, 1019
PspPPI RGGWCCY 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 330, 362
PvuI CGATCG 1 cut(s) 35
PvuII CAGCTG 2 cut(s) 881, 1039
RsaI GTAC 3 cut(s) 1142, 1161, 1249
RsaNI GTAC 3 cut(s) 1141, 1160, 1248
RseI CAYNNNNRTG 2 cut(s) 916, 977
SaqAI TTAA 4 cut(s) 689, 693, 944, 1080
SatI GCNGC 6 cut(s) 6, 306, 663, 882, 922, 1018
Sau3AI GATC 7 cut(s) 32, 226, 727, 736, 1072, 1178, 1204
Sau96I GGNCC 4 cut(s) 40, 80, 98, 1019
SchI GAGTC 1 cut(s) 1144
ScrFI CCNGG 5 cut(s) 66, 96, 570, 801, 1023
SduI GDGCHC 3 cut(s) 496, 596, 1089
SfaNI GCATC 4 cut(s) 240, 908, 920, 1125
SfoI GGCGCC 1 cut(s) 1152
SfuI TTCGAA 2 cut(s) 90, 202
SinI GGWCC 3 cut(s) 40, 80, 98
SmiMI CAYNNNNRTG 2 cut(s) 916, 977
SmlI CTYRAG 4 cut(s) 176, 209, 470, 615
SmoI CTYRAG 4 cut(s) 176, 209, 470, 615
Sse9I AATT 7 cut(s) 383, 395, 448, 690, 986, 1050, 1094
SsiI CCGC 3 cut(s) 102, 714, 1017
SspDI GGCGCC 1 cut(s) 1150
SspI AATATT 1 cut(s) 343
SspMI CTAG 4 cut(s) 555, 654, 893, 1163
StyD4I CCNGG 5 cut(s) 64, 94, 568, 799, 1021
TaaI ACNGT 1 cut(s) 1007
TaiI ACGT 2 cut(s) 316, 950
TaqI TCGA 6 cut(s) 35, 45, 90, 202, 234, 1106
TaqII GACCGA 1 cut(s) 404
TasI AATT 7 cut(s) 383, 395, 448, 690, 986, 1050, 1094
TatI WGTACW 2 cut(s) 1140, 1159
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 3 cut(s) 422, 479, 1219
Tru1I TTAA 4 cut(s) 689, 693, 944, 1080
Tru9I TTAA 4 cut(s) 689, 693, 944, 1080
TscAI CASTG 4 cut(s) 22, 111, 501, 979
TseFI GTSAC 2 cut(s) 574, 979
TseI GCWGC 5 cut(s) 5, 305, 662, 881, 921
Tsp45I GTSAC 2 cut(s) 574, 979
TspDTI ATGAA 3 cut(s) 764, 1057, 1266
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 4 cut(s) 22, 111, 501, 979
VneI GTGCAC 2 cut(s) 492, 592
VpaK11BI GGWCC 3 cut(s) 40, 80, 98
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 4 cut(s) 383, 395, 448, 986
XceI RCATGY 3 cut(s) 554, 888, 1147
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 4 cut(s) 555, 654, 893, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.