Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

31554537 .. 31566904

Gene Structure 12368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGATTGGCCGTAGTCTTGATCCCGGAAAAGATCCGGCTCCTATTCTCAATCATGAATACACAATTCTCTCATCAATCTCTCTCAAAAATCTCATTCTTAAACATTTCCCAAATTCTAATGTATTTAGCCATACACCCTACATACTTCATTTAGTACTGTTCGCATTTACATTTCTATTTAGAATGCTTCCTCATGAAGATGTAGGCAAGCCAAAGGCTGAGGTTGCTGCAGGACGAGTAATGCAAAGAGTTGCTGGGGTTAACATCGTTCCGCACTTCTGCCAGATTGAGGACAAAGTGCTTGACTTTTACAGCAATTTCAGCATCATTGCTCTTGGTCTCGATTCAATTGAAGCTCGGAGCTATATAATTCTGTTGCTTGTAGCTTTCTTGTATGATGCTGATGATAAACCCCAAGAAGAAACCGTCAAACCTATGGTCGATGGTGGGACTGAAGGGATCAGTCCATGCTTTGAGTGTACAATCTGGCTTTTCCCTCCTCAAGTGAAGTTCCCTTTATGCACACTTGCAGAAACCCCTAGAACTACTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGGATGAGGTACATAGCGGAGAGGCTTTTGATCCAGACGACCCTGAACATATGAAGTGGGTGTACGATGAGACTGAGCTGTTTGGTATTCCAGGAGCTACATTGTCTCTTGGGGTTGTGAAGAACATCATACCAGCTATTGCTTCCTCAAATGCGATTATATCAGCTGCCTGTGCGCTAGAAACATTGAAGATTGCATCTGGATGCATTTGTCAGGGACAAAGACTGTGTCTTGTATGTGGCCCAGGTGTTCTTATTGAGCTGGACACCTCAGTTACTTTGCAAAAGGTATTTTCAGTTTCCTATGGTTTTATTGGATTTCTTGTTTGCTTGTCTAATCCTTGTTTAATTGAACTTGAAGAACACCCTAAATTGCTGTTGTCAAAAGCAAGCATTGCGCATAGAGGGAAGAATTTGTACATGCAAGCGCCACCTGTACTGGAACAGATGACCAGATCAAACTTAAGCAAGTCTCTCTATGACCTAATGGGTAAAATTCCCAAAAATGTTGTCCATGCGACTGGTACTACCAACAAGAATGACAAAAAGACTTCGGTTCTGAGAAAGTTACGAGTTGTTTTCAAGGGAGGTGATAGAATTACAGAGATGGAGACTGCAGCAGGCGGGGCATCAGTTTTATACTGCATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

411

Amino Acids

45.25

Weight (kDa)

6.12

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	65 - 263	3.7e-14	ThiF family
E2_bind	PF08825	312 - 388	6.5e-17	E2 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	981
AciI	CCGC	3 cut(s)	272, 600, 1206
AclWI	GGATC	4 cut(s)	14, 26, 467, 608
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	3 cut(s)	112, 994, 1077
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	7 cut(s)	156, 481, 594, 647, 1001, 1020, 1108
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	1045
AgsI	TTSAA	7 cut(s)	348, 353, 563, 772, 935, 941, 1165
AjnI	CCWGG	2 cut(s)	673, 826
AluBI	AGCT	8 cut(s)	356, 363, 386, 661, 680, 719, 749, 844
AluI	AGCT	8 cut(s)	356, 363, 386, 661, 680, 719, 749, 844
Alw26I	GTCTC	5 cut(s)	344, 647, 693, 1059, 1187
AlwI	GGATC	4 cut(s)	14, 26, 467, 608
AoxI	GGCC	2 cut(s)	7, 823
ApeKI	GCWGC	3 cut(s)	227, 749, 1199
ApoI	RAATTY	3 cut(s)	112, 994, 1077
ArsI	GACNNNNNNTTYG	6 cut(s)	423, 455, 796, 828, 1077, 1109
AspLEI	GCGC	3 cut(s)	760, 982, 1012
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	563, 1184
BarI	GAAGNNNNNNTAC	4 cut(s)	629, 661, 983, 1015
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	214, 736, 1211
BccI	CCATC	2 cut(s)	437, 1183
BciT130I	CCWGG	2 cut(s)	675, 828
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	5 cut(s)	344, 647, 693, 1059, 1187
BfaI	CTAG	2 cut(s)	540, 761
BfmI	CTRYAG	2 cut(s)	228, 1197
BfoI	RGCGCY	1 cut(s)	1013
BfrI	CTTAAG	1 cut(s)	1045
BisI	GCNGC	3 cut(s)	228, 750, 1200
BlsI	GCNGC	3 cut(s)	229, 751, 1201
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	24, 675, 828
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	24, 675, 828
BmsI	GCATC	5 cut(s)	333, 388, 776, 788, 1220
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	1026, 1108
Bse3DI	GCAATG	2 cut(s)	327, 975
BseBI	CCWGG	2 cut(s)	675, 828
BseDI	CCNNGG	1 cut(s)	826
BseGI	GGATG	2 cut(s)	592, 791
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	327, 975
BseMII	CTCAG	4 cut(s)	210, 648, 867, 1133
BseNI	ACTGG	2 cut(s)	1026, 1108
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	214, 736, 1211
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	9, 825
BsiSI	CCGG	2 cut(s)	24, 35
BslFI	GGGAC	2 cut(s)	463, 813
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	5 cut(s)	344, 647, 693, 1059, 1187
BsmFI	GGGAC	2 cut(s)	463, 813
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	9, 825
Bso31I	GGTCTC	1 cut(s)	344
Bsp1407I	TGTACA	2 cut(s)	479, 999
Bsp143I	GATC	5 cut(s)	19, 31, 459, 613, 1037
BspACI	CCGC	3 cut(s)	272, 600, 1206
BspANI	GGCC	2 cut(s)	9, 825
BspCNI	CTCAG	4 cut(s)	211, 649, 866, 1134
BspHI	TCATGA	2 cut(s)	52, 193
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	2 cut(s)	232, 1201
BspPI	GGATC	4 cut(s)	14, 26, 467, 608
BspTI	CTTAAG	1 cut(s)	1045
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	327, 975
BsrGI	TGTACA	2 cut(s)	479, 999
BsrI	ACTGG	2 cut(s)	1026, 1108
BssECI	CCNNGG	1 cut(s)	826
BssMI	GATC	5 cut(s)	19, 31, 459, 613, 1037
Bst2UI	CCWGG	2 cut(s)	675, 828
Bst4CI	ACNGT	3 cut(s)	159, 427, 810
BstAFI	CTTAAG	1 cut(s)	1045
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstAUI	TGTACA	2 cut(s)	479, 999
BstC8I	GCNNGC	4 cut(s)	209, 973, 1008, 1204
BstDEI	CTNAG	4 cut(s)	219, 657, 853, 1142
BstF5I	GGATG	2 cut(s)	592, 791
BstH2I	RGCGCY	1 cut(s)	1013
BstHHI	GCGC	3 cut(s)	760, 982, 1012
BstKTI	GATC	5 cut(s)	22, 34, 462, 616, 1040
BstMAI	GTCTC	5 cut(s)	344, 647, 693, 1059, 1187
BstMBI	GATC	5 cut(s)	19, 31, 459, 613, 1037
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 321, 755, 977, 1208
BstNI	CCWGG	2 cut(s)	675, 828
BstNSI	RCATGY	1 cut(s)	1006
BstSCI	CCNGG	3 cut(s)	22, 673, 826
BstSFI	CTRYAG	2 cut(s)	228, 1197
BstV1I	GCAGC	3 cut(s)	214, 736, 1211
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	1103
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	9, 825
BtsCI	GGATG	2 cut(s)	592, 791
Cac8I	GCNNGC	4 cut(s)	209, 973, 1008, 1204
CciI	TCATGA	2 cut(s)	52, 193
CfoI	GCGC	3 cut(s)	760, 982, 1012
Cfr13I	GGNCC	1 cut(s)	824
Csp6I	GTAC	7 cut(s)	155, 480, 593, 646, 1000, 1019, 1107
CviAII	CATG	5 cut(s)	53, 194, 468, 1003, 1097
CviQI	GTAC	7 cut(s)	155, 480, 593, 646, 1000, 1019, 1107
DdeI	CTNAG	4 cut(s)	219, 657, 853, 1142
DpnI	GATC	5 cut(s)	21, 33, 461, 615, 1039
DpnII	GATC	5 cut(s)	19, 31, 459, 613, 1037
EaeI	YGGCCR	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	673, 826
EcoT22I	ATGCAT	1 cut(s)	791
FaeI	CATG	5 cut(s)	56, 197, 471, 1006, 1100
FaqI	GGGAC	2 cut(s)	463, 813
FatI	CATG	5 cut(s)	52, 193, 467, 1002, 1096
FauI	CCCGC	1 cut(s)	1199
FauNDI	CATATG	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	228, 750, 1200
FokI	GGATG	2 cut(s)	599, 798
Fsp4HI	GCNGC	3 cut(s)	228, 750, 1200
FspBI	CTAG	2 cut(s)	540, 761
FspI	TGCGCA	1 cut(s)	981
GlaI	GCGC	3 cut(s)	759, 981, 1011
GluI	GCNGC	3 cut(s)	228, 750, 1200
GsaI	CCCAGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	1013
HaeIII	GGCC	2 cut(s)	9, 825
HapII	CCGG	2 cut(s)	24, 35
HhaI	GCGC	3 cut(s)	760, 982, 1012
Hin1II	CATG	5 cut(s)	56, 197, 471, 1006, 1100
Hin6I	GCGC	3 cut(s)	758, 980, 1010
HinP1I	GCGC	3 cut(s)	758, 980, 1010
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	344
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	24, 35
HphI	GGTGA	2 cut(s)	563, 1184
Hpy166II	GTNNAC	3 cut(s)	262, 480, 646
Hpy188I	TCNGA	2 cut(s)	360, 1143
Hpy188III	TCNNGA	6 cut(s)	17, 53, 194, 341, 617, 783
Hpy8I	GTNNAC	3 cut(s)	262, 480, 646
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	3 cut(s)	159, 427, 810
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 321, 755, 977, 1208
HpyF3I	CTNAG	4 cut(s)	219, 657, 853, 1142
Hsp92II	CATG	5 cut(s)	56, 197, 471, 1006, 1100
HspAI	GCGC	3 cut(s)	758, 980, 1010
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	19, 31, 459, 613, 1037
LmnI	GCTCC	3 cut(s)	43, 360, 677
Lsp1109I	GCAGC	3 cut(s)	214, 736, 1211
LweI	GCATC	5 cut(s)	333, 388, 776, 788, 1220
MaeI	CTAG	2 cut(s)	540, 761
MaeIII	GTNAC	2 cut(s)	856, 1149
MalI	GATC	5 cut(s)	21, 33, 461, 615, 1039
MboI	GATC	5 cut(s)	19, 31, 459, 613, 1037
MboII	GAAGA	6 cut(s)	209, 431, 715, 784, 953, 1003
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	791
MseI	TTAA	5 cut(s)	99, 261, 579, 929, 1046
MslI	CAYNNNNRTG	2 cut(s)	198, 784
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	1045
MspI	CCGG	2 cut(s)	24, 35
MspR9I	CCNGG	3 cut(s)	24, 675, 828
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	675, 828
MwoI	GCNNNNNNNGC	5 cut(s)	224, 321, 755, 977, 1208
NciI	CCSGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	5 cut(s)	19, 31, 459, 613, 1037
NlaIII	CATG	5 cut(s)	56, 197, 471, 1006, 1100
NlaIV	GGNNCC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	981
NsiI	ATGCAT	1 cut(s)	791
NspI	RCATGY	1 cut(s)	1006
PagI	TCATGA	2 cut(s)	52, 193
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	810
PfoI	TCCNGGA	2 cut(s)	22, 673
PkrI	GCNGC	3 cut(s)	229, 751, 1201
Psp6I	CCWGG	2 cut(s)	673, 826
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	673, 826
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	824
PstI	CTGCAG	2 cut(s)	232, 1201
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	810
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	7 cut(s)	156, 481, 594, 647, 1001, 1020, 1108
RsaNI	GTAC	7 cut(s)	155, 480, 593, 646, 1000, 1019, 1107
RseI	CAYNNNNRTG	2 cut(s)	198, 784
SaqAI	TTAA	5 cut(s)	99, 261, 579, 929, 1046
SatI	GCNGC	3 cut(s)	228, 750, 1200
Sau3AI	GATC	5 cut(s)	19, 31, 459, 613, 1037
Sau96I	GGNCC	1 cut(s)	824
ScaI	AGTACT	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	24, 675, 828
SfaNI	GCATC	5 cut(s)	333, 388, 776, 788, 1220
SfcI	CTRYAG	2 cut(s)	228, 1197
SmiMI	CAYNNNNRTG	2 cut(s)	198, 784
SmlI	CTYRAG	2 cut(s)	501, 1045
SmoI	CTYRAG	2 cut(s)	501, 1045
SsiI	CCGC	3 cut(s)	272, 600, 1206
SspMI	CTAG	2 cut(s)	540, 761
StyD4I	CCNGG	3 cut(s)	22, 673, 826
TaaI	ACNGT	3 cut(s)	159, 427, 810
TaqI	TCGA	2 cut(s)	342, 441
TatI	WGTACW	4 cut(s)	154, 479, 999, 1018
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	5 cut(s)	99, 261, 579, 929, 1046
Tru9I	TTAA	5 cut(s)	99, 261, 579, 929, 1046
TseI	GCWGC	3 cut(s)	227, 749, 1199
TspDTI	ATGAA	4 cut(s)	69, 137, 210, 650
Tth111I	GACNNNGTC	1 cut(s)	810
Vha464I	CTTAAG	1 cut(s)	1045
XapI	RAATTY	3 cut(s)	112, 994, 1077
XceI	RCATGY	1 cut(s)	1006
XspI	CTAG	2 cut(s)	540, 761
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.