Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001998.1

Orthogroup ID

OG0001802

Physical Location & Seq

Genomic Coordinates Reverse (-)

123484 .. 126124

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001998.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtgcttcatcctcctcctcgcctcctcgttgctggtgtctgcggtagaggtggtggcggcggcgtctgggtcttggctgacggtgaaacatgccagggctgctaactggattgcggttaaggctggagcagggccggccctggtgttgagaaggctaggagtgaagggcgtggagataaagaaaccagagcagctcaaaaccatggcctcactcataatccctggaggagagagcaccaccatggctaagctcgccgagtaccacaacctgtatatcagtaaatggggattagatgaaaatgaggactgttctagaaatggtgtaatttggctatatgggttttgttctttggtgctttgggtatataggagtactggtggaattgtgaactatatcggcttgcctaatataatcacaaatgacacaggaggtaaaggaaatgaagtagattatagcattatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

155

Amino Acids

16.68

Weight (kDa)

8.44

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19180 AT5G19180
fragaria_vesca	FvH4_1g25030 FvH4_4g14790 FvH4_4g14790
malus_domestica	MD13G1185500.v1.1 MD16G1186500.v1.1
prunus_persica	Prupe.1G153200_v2.0.a1 Prupe.1G153200_v2.0.a1
pyrus_communis	pycom13g16000 pycom16g15600 pycom16g15610
rosa_chinensis	RchiOBHm_Chr1g0326001 RchiOBHm_Chr1g0328651 RchiOBHm_Chr1g0343821 RchiOBHm_Chr4g0417521
rosa_laevigata	RLG00000007900
rosa_multiflora	Rmu_co8081816.1_g000001 Rmu_co8369919.1_g000001 Rmu_co8449369.1_g000001 Rmu_sc0000039.1_g000007 Rmu_sc0001998.1_g000028 Rmu_sc0004142.1_g000003 Rmu_sc0004142.1_g000011 Rmu_sc0023530.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332360 Rroxscaffold_5G00361200 Rroxscaffold_7G00195950
rosa_rugosa	Rorug02G0437800 Rorug04G0148600 Rorug04G0148800 Rorug06G0046000
rosa_samantha	Rh1AG232600 Rh1CG217300 Rh3DG111800 Rh4AG211600 Rh4BG080000 Rh4BG211900 Rh4CG222300 Rh4DG209500 Rh5DG535100 Rh6BG186400 Rh6CG189200
rosa_wichuraiana	Rw1G008650 Rw4G017890 Rw6G008550 Rw6G016160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	44, 59, 62, 116
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	2 cut(s)	263, 376
AjnI	CCWGG	3 cut(s)	95, 141, 223
AluBI	AGCT	2 cut(s)	196, 253
AluI	AGCT	2 cut(s)	196, 253
Alw21I	GWGCWC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	134, 138, 207
ApeKI	GCWGC	2 cut(s)	101, 193
AspS9I	GGNCC	2 cut(s)	134, 139
AsuHPI	GGTGA	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	88, 205
BciT130I	CCWGG	3 cut(s)	97, 143, 225
BfaI	CTAG	2 cut(s)	158, 315
BisI	GCNGC	4 cut(s)	60, 63, 102, 194
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	4 cut(s)	61, 64, 103, 195
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	97, 143, 225
BmgT120I	GGNCC	2 cut(s)	134, 139
BmrFI	CCNGG	3 cut(s)	97, 143, 225
BpmI	CTGGAG	2 cut(s)	147, 246
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	5 cut(s)	96, 141, 204, 223, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	113, 382
BseBI	CCWGG	3 cut(s)	97, 143, 225
BseDI	CCNNGG	5 cut(s)	96, 141, 204, 223, 243
BseGI	GGATG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	113, 382
BseRI	GAGGAG	4 cut(s)	5, 8, 16, 243
BseXI	GCAGC	2 cut(s)	88, 205
BshFI	GGCC	3 cut(s)	136, 140, 209
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	137
BsnI	GGCC	3 cut(s)	136, 140, 209
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp1720I	GCTNAGC	1 cut(s)	249
Bsp19I	CCATGG	2 cut(s)	204, 243
BspACI	CCGC	4 cut(s)	44, 59, 62, 116
BspANI	GGCC	3 cut(s)	136, 140, 209
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	113, 382
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	5 cut(s)	96, 141, 204, 223, 243
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	204, 243
Bst2UI	CCWGG	3 cut(s)	97, 143, 225
Bst4CI	ACNGT	2 cut(s)	85, 311
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	138, 255, 404
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	2 cut(s)	204, 243
BstF5I	GGATG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 122, 137, 254
BstNI	CCWGG	3 cut(s)	97, 143, 225
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	95, 141, 223
BstV1I	GCAGC	2 cut(s)	88, 205
BsuRI	GGCC	3 cut(s)	136, 140, 209
BtgI	CCRYGG	2 cut(s)	204, 243
BtsCI	GGATG	1 cut(s)	9
Cac8I	GCNNGC	3 cut(s)	138, 255, 404
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	134, 139
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	262, 375
CviAII	CATG	3 cut(s)	92, 205, 244
CviQI	GTAC	2 cut(s)	262, 375
DdeI	CTNAG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	204, 243
EcoRII	CCWGG	3 cut(s)	95, 141, 223
EcoT14I	CCWWGG	2 cut(s)	204, 243
ErhI	CCWWGG	2 cut(s)	204, 243
FaeI	CATG	3 cut(s)	95, 208, 247
FatI	CATG	3 cut(s)	91, 204, 243
Fnu4HI	GCNGC	4 cut(s)	60, 63, 102, 194
FseI	GGCCGGCC	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	60, 63, 102, 194
FspBI	CTAG	2 cut(s)	158, 315
GluI	GCNGC	4 cut(s)	60, 63, 102, 194
GsuI	CTGGAG	2 cut(s)	147, 246
HaeIII	GGCC	3 cut(s)	136, 140, 209
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	95, 208, 247
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	147, 160
HpyCH4III	ACNGT	2 cut(s)	85, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 122, 137, 254
HpyF3I	CTNAG	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	95, 208, 247
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	2 cut(s)	88, 205
MaeI	CTAG	2 cut(s)	158, 315
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	2 cut(s)	327, 384
MroNI	GCCGGC	1 cut(s)	136
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	97, 143, 225
MvaI	CCWGG	3 cut(s)	97, 143, 225
MwoI	GCNNNNNNNGC	4 cut(s)	101, 122, 137, 254
NaeI	GCCGGC	1 cut(s)	138
NcoI	CCATGG	2 cut(s)	204, 243
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	95, 208, 247
NmeAIII	GCCGAG	1 cut(s)	283
NspI	RCATGY	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	61, 64, 103, 195
Psp6I	CCWGG	3 cut(s)	95, 141, 223
PspGI	CCWGG	3 cut(s)	95, 141, 223
PspPI	GGNCC	2 cut(s)	134, 139
RigI	GGCCGGCC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	263, 376
RsaNI	GTAC	2 cut(s)	262, 375
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	60, 63, 102, 194
Sau96I	GGNCC	2 cut(s)	134, 139
ScaI	AGTACT	1 cut(s)	376
ScrFI	CCNGG	3 cut(s)	97, 143, 225
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	5 cut(s)	54, 198, 255, 273, 436
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	327, 384
SsiI	CCGC	4 cut(s)	44, 59, 62, 116
SspMI	CTAG	2 cut(s)	158, 315
StyD4I	CCNGG	3 cut(s)	95, 141, 223
StyI	CCWWGG	2 cut(s)	204, 243
TaaI	ACNGT	2 cut(s)	85, 311
TasI	AATT	2 cut(s)	327, 384
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	2 cut(s)	62, 65
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	2 cut(s)	101, 193
TspDTI	ATGAA	2 cut(s)	312, 459
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	2 cut(s)	158, 315
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.