FvH4_4g14800

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
18442446 .. 18443642
1197 bp
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UTR
Exon/CDS
Intron
FvH4_4g14800.t1

Sequence Viewer

Length: 393 bp
ATGGAAATGGCCATGGAGCTTGAAGATGACTTGTTCTTTGCAGACTTGACTAAGCAAATCTCTCTTCTTATCATGGATGATGATGATCAAGACCCTATTGCCTCTTGCCCCTCTGTTTCTCTTCAGGCTTTCTCTTGTGCAATTCATCAACCAGCGCAAGTGCCTGCTTATGTGTATGAGCAATCTTGCAAGAGAGAAACCAAAGGAACTGGAGTTTTTATCCCGCAATCGACAGTGCCGAGAAGAAAGCAAAACAGGCAAGGGAAATACACTAATGCATACAACAACACAAAATCCCAAAGCAGATCACAATTAGCTGATCAGCGCAACAGGAAAATGGTTTCCCAATTGCCTTCAGACTTTGCTTTTAGAGCAAGAAATGGCAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.8

Weight (kDa)

7.69

Isoelectric Point (pI)

66.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 107, 339
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 2 cut(s) 19, 317
AluI AGCT 2 cut(s) 19, 317
AoxI GGCC 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspLEI GCGC 2 cut(s) 157, 327
BalI TGGCCA 1 cut(s) 11
BclI TGATCA 2 cut(s) 85, 319
BpmI CTGGAG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 84
BseNI ACTGG 1 cut(s) 214
BshFI GGCC 1 cut(s) 11
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 85, 305, 319
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 85, 305, 319
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 69, 126
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 2 cut(s) 157, 327
BstKTI GATC 3 cut(s) 88, 308, 322
BstMBI GATC 3 cut(s) 85, 305, 319
BstMWI GCNNNNNNNGC 2 cut(s) 256, 371
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 157, 327
CviAII CATG 2 cut(s) 13, 73
CviJI RGCY 4 cut(s) 11, 19, 128, 317
CviKI_1 RGCY 4 cut(s) 11, 19, 128, 317
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 87, 307, 321
DpnII GATC 3 cut(s) 85, 305, 319
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 69, 126
EarI CTCTTC 2 cut(s) 69, 126
Eco130I CCWWGG 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 107, 339
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 16, 76
FaiI YATR 5 cut(s) 14, 74, 171, 177, 280
FatI CATG 2 cut(s) 12, 72
FauI CCCGC 1 cut(s) 231
FbaI TGATCA 2 cut(s) 85, 319
FokI GGATG 1 cut(s) 89
GlaI GCGC 2 cut(s) 156, 326
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 11
HhaI GCGC 2 cut(s) 157, 327
Hin1II CATG 2 cut(s) 16, 76
Hin6I GCGC 2 cut(s) 155, 325
HinP1I GCGC 2 cut(s) 155, 325
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 41, 140, 189, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 371
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 16, 76
HspAI GCGC 2 cut(s) 155, 325
Ksp22I TGATCA 2 cut(s) 85, 319
Kzo9I GATC 3 cut(s) 85, 305, 319
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 110, 165, 177, 195, 241, 316
MalI GATC 3 cut(s) 87, 307, 321
MboI GATC 3 cut(s) 85, 305, 319
MboII GAAGA 4 cut(s) 35, 56, 113, 255
MfeI CAATTG 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 3 cut(s) 141, 311, 347
MluNI TGGCCA 1 cut(s) 11
MnlI CCTC 2 cut(s) 112, 121
Mox20I TGGCCA 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 280
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MunI CAATTG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 256, 371
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 85, 305, 319
NlaIII CATG 2 cut(s) 16, 76
NmeAIII GCCGAG 1 cut(s) 264
NsiI ATGCAT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 236
Sau3AI GATC 3 cut(s) 85, 305, 319
SetI ASST 2 cut(s) 21, 319
Sse9I AATT 3 cut(s) 141, 311, 347
SsiI CCGC 1 cut(s) 224
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 230
TasI AATT 3 cut(s) 141, 311, 347
TscAI CASTG 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.