Rroxscaffold_5G00361190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012980
Physical Location & Seq
Reverse (-)
41811606 .. 41814160
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361190.1

Sequence Viewer

Length: 492 bp
ATGTCGACGCAGAACGTGGACTACAGAGCACCCACATACATAGAGCTTGAGCTTGAAGAGACTTGCACAGATCCAATTGCTAGATTAAGCATAAGAAGAAGTATGGAAGTGGCCAAGGAGCTTGAAGATGACTTGTTCTTTGCAGACTTGACTAAGCAAATCTCTCTTCTTATCATGGATGATGATGATCAAGACCCTATTGCCACTTGCCCTTCTGTTTCTCTTCAGGCTTTCTCTTGTGCAATTCATCCACCAGCGCAAGTCCGTGCTTATCTGTATGAGCAATCTTGCAAAAGAGAAACCAAAGGAACTGGAGTTTTCATCCCGCAATCGACAGCGCCGAGAAGAAAGCATAATAGGCAAGGCAAATACACTAATGCATACAACAACACAAAACCCCACAACAGATCACAAGCTGATCAGCGCAACAGGAAAATGGTTCCCCAACTGCCTTCAGACTTTGCTTTTAGACCAAGAAATGGCAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.72

Weight (kDa)

7.67

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06070 AT5G19190
fragaria_vesca FvH4_4g14800
malus_domestica MD13G1185600.v1.1
prunus_persica Prupe.1G153300_v2.0.a1 Prupe.1G153300_v2.0.a1
pyrus_communis pycom13g16010 pycom16g15620
rosa_chinensis RchiOBHm_Chr4g0417511
rosa_laevigata RLG00000007901
rosa_multiflora Rmu_sc0004142.1_g000012
rosa_roxburghii Rroxscaffold_5G00361190
rosa_rugosa Rorug04G0148600
rosa_samantha Rh4AG211500 Rh4BG211800 Rh4CG222200 Rh4DG209400
rosa_wichuraiana Rw4G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 479
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 209, 438
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 56, 125
AluBI AGCT 4 cut(s) 46, 52, 121, 416
AluI AGCT 4 cut(s) 46, 52, 121, 416
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 65
AoxI GGCC 1 cut(s) 111
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 3 cut(s) 259, 340, 426
BalI TGGCCA 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 31
BclI TGATCA 2 cut(s) 187, 418
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 184, 247, 321
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 316
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 4 cut(s) 70, 187, 407, 418
BspACI CCGC 1 cut(s) 326
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 70, 187, 407, 418
BssT1I CCWWGG 1 cut(s) 114
Bst6I CTCTTC 3 cut(s) 51, 171, 228
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 184, 247, 321
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 3 cut(s) 259, 340, 426
BstKTI GATC 4 cut(s) 73, 190, 410, 421
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 4 cut(s) 70, 187, 407, 418
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 3 cut(s) 184, 247, 321
CfoI GCGC 3 cut(s) 259, 340, 426
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 175
CviJI RGCY 6 cut(s) 46, 52, 113, 121, 230, 416
CviKI_1 RGCY 6 cut(s) 46, 52, 113, 121, 230, 416
DdeI CTNAG 1 cut(s) 153
DpnI GATC 4 cut(s) 72, 189, 409, 420
DpnII GATC 4 cut(s) 70, 187, 407, 418
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 51, 171, 228
EarI CTCTTC 3 cut(s) 51, 171, 228
Eco130I CCWWGG 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 209, 438
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 178
FaiI YATR 8 cut(s) 37, 41, 92, 104, 176, 279, 354, 382
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 333
FbaI TGATCA 2 cut(s) 187, 418
FblI GTMKAC 1 cut(s) 5
FokI GGATG 3 cut(s) 191, 234, 308
FspBI CTAG 1 cut(s) 81
GlaI GCGC 3 cut(s) 258, 339, 425
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 1 cut(s) 113
HgaI GACGC 1 cut(s) 16
HhaI GCGC 3 cut(s) 259, 340, 426
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 3 cut(s) 257, 338, 424
HinP1I GCGC 3 cut(s) 257, 338, 424
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 6, 19
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 6, 19
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 222, 462
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 66, 143, 242, 291, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 3 cut(s) 257, 338, 424
Ksp22I TGATCA 2 cut(s) 187, 418
Kzo9I GATC 4 cut(s) 70, 187, 407, 418
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 212, 267, 297, 415
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 15
MalI GATC 4 cut(s) 72, 189, 409, 420
MboI GATC 4 cut(s) 70, 187, 407, 418
MboII GAAGA 6 cut(s) 68, 108, 137, 158, 215, 357
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 2 cut(s) 75, 243
MluNI TGGCCA 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 382
MscI TGGCCA 1 cut(s) 113
MseI TTAA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 113
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 4 cut(s) 70, 187, 407, 418
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 441
NmeAIII GCCGAG 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 441
PsrI GAACNNNNNNTAC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 70
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 4 cut(s) 70, 187, 407, 418
SduI GDGCHC 1 cut(s) 31
SetI ASST 5 cut(s) 18, 48, 54, 123, 418
SfcI CTRYAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 75, 243
SsiI CCGC 1 cut(s) 326
SspMI CTAG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 5, 332
TasI AATT 2 cut(s) 75, 243
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 236, 310
TspGWI ACGGA 1 cut(s) 254
Van91I CCANNNNNTGG 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.