Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Reverse (-)

1841168 .. 1843196

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAATGGTGAGGCACGGTCAAGAGTAGTCGACCAAGAAGCTGGCTCAACTCCATCTACTTTGAGAGATGAAGATCATCCCTCGAGACAAAGGCTTTTCGGATGTCTCCCTTATGATATAGATCTCAATCCCCTACGCATTGTAATGGCGGAATTGGTGGGGACATTCATTCTAATGTTCAGTGTGTGTGGGGTCATAAGCAGTACCCAATTATCCGGCGGCCACGTGGGATTGCTAGAGTACGCCGTCACCGCTGGATTATCTGTGGTGGTCGTAGTTTACTCCATCGGACACATCTCTGGCGCCCATCTTAACCCTTCCATCACCATTGCTTTCGCTGTCTTTGGCGGATTCCCGTGGTCTCAGGTTCCGTTGTATATAACGGCGCAAACATTGGGGGCAACGGCGGCAACATTAGTTGGGGTGTCAGTGTACGGAGTAAACGCTGACATTATGGCAACAAAACCTGCTTTAAGCTGCGTTTCTGCATTTTTCGTTGAACTCATAGCTACGAGCATCGTCGTGTTTCTCGCCTCCGCGTTGCATTGTGGTCCTCATCAAAATTTGGGTAATTTGACGGGGTTCGTGATTGGAACAGTCATTTCCCTTGGAGTGCTTATTACCGGACCGATTTCAGGAGGATCGATGAACCCAGCTCGATCACTTGGACCGGCGGTGGTGGCATGGGATTTTGAAGACTTATGGATTTACATGACAGCTCCGGTGATCGGAGCCATAATCGGAGTTTTGACATACAGATCAATTAGCCTAAAAACCAGGCCTTGCCCTTCTCCAGTTTCCCCTTCCGTTTCTTCACTTTTACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

275

Amino Acids

28.75

Weight (kDa)

6.03

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	45 - 252	2.7e-52	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	539
AciI	CCGC	7 cut(s)	149, 219, 252, 348, 407, 537, 674
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	562
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	3 cut(s)	205, 242, 434
AfiI	CCNNNNNNNGG	2 cut(s)	635, 728
AgsI	TTSAA	2 cut(s)	500, 695
AjnI	CCWGG	1 cut(s)	776
AluBI	AGCT	5 cut(s)	41, 477, 509, 656, 719
AluI	AGCT	5 cut(s)	41, 477, 509, 656, 719
Alw26I	GTCTC	3 cut(s)	79, 110, 366
AlwI	GGATC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	2 cut(s)	220, 779
ApeKI	GCWGC	1 cut(s)	477
ApoI	RAATTY	1 cut(s)	562
AspLEI	GCGC	2 cut(s)	305, 388
AspS9I	GGNCC	3 cut(s)	551, 626, 668
AsuHPI	GGTGA	4 cut(s)	20, 241, 316, 736
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	3 cut(s)	551, 626, 668
BanI	GGYRCC	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	4 cut(s)	61, 293, 315, 329
BceAI	ACGGC	3 cut(s)	230, 399, 420
BciT130I	CCWGG	1 cut(s)	778
BcoDI	GTCTC	3 cut(s)	79, 110, 366
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	220, 408, 478
BlsI	GCNGC	3 cut(s)	221, 409, 479
Bme1390I	CCNGG	1 cut(s)	778
Bme18I	GGWCC	3 cut(s)	551, 626, 668
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	3 cut(s)	551, 626, 668
BmiI	GGNNCC	3 cut(s)	304, 369, 733
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	777
Bsa29I	ATCGAT	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	3 cut(s)	72, 120, 126
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	356, 607
BsaWI	WCCGGW	2 cut(s)	623, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 728
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	794
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	3 cut(s)	72, 120, 126
BseBI	CCWGG	1 cut(s)	778
BseCI	ATCGAT	1 cut(s)	644
BseDI	CCNNGG	2 cut(s)	356, 607
BseGI	GGATG	2 cut(s)	76, 107
BseJI	GATNNNNATC	3 cut(s)	72, 120, 126
BseLI	CCNNNNNNNGG	2 cut(s)	635, 728
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	794
BseXI	GCAGC	1 cut(s)	464
BseYI	CCCAGC	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	222, 781
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	4 cut(s)	216, 624, 671, 722
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	635, 728
BsmAI	GTCTC	3 cut(s)	79, 110, 366
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	222, 781
Bso31I	GGTCTC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	82
Bsp143I	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
BspACI	CCGC	7 cut(s)	149, 219, 252, 348, 407, 537, 674
BspANI	GGCC	2 cut(s)	222, 781
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	644
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	3 cut(s)	304, 369, 733
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	794
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	356, 607
BssMI	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	778
Bst4CI	ACNGT	2 cut(s)	18, 598
BstACI	GRCGYC	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	76, 107
BstFNI	CGCG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	305, 388
BstKTI	GATC	6 cut(s)	76, 124, 644, 662, 729, 761
BstMAI	GTCTC	3 cut(s)	79, 110, 366
BstMBI	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 407, 680
BstNI	CCWGG	1 cut(s)	778
BstSCI	CCNGG	1 cut(s)	776
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	702
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	222, 781
BsuTUI	ATCGAT	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	76, 107
BtsIMutI	CAGTG	2 cut(s)	187, 435
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	2 cut(s)	305, 388
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	3 cut(s)	551, 626, 668
ClaI	ATCGAT	1 cut(s)	644
CpoI	CGGWCCG	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	204, 241, 433
CspI	CGGWCCG	1 cut(s)	626
CviAII	CATG	2 cut(s)	684, 712
CviQI	GTAC	3 cut(s)	204, 241, 433
DdeI	CTNAG	1 cut(s)	363
DinI	GGCGCC	1 cut(s)	304
DpnI	GATC	6 cut(s)	75, 123, 643, 661, 728, 760
DpnII	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
EaeI	YGGCCR	1 cut(s)	220
EciI	GGCGGA	2 cut(s)	164, 363
Eco130I	CCWWGG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	551, 626, 668
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	776
EcoT14I	CCWWGG	1 cut(s)	607
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	2 cut(s)	687, 715
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	683, 711
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	220, 408, 478
FokI	GGATG	2 cut(s)	63, 114
Fsp4HI	GCNGC	3 cut(s)	220, 408, 478
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	304, 387
GluI	GCNGC	3 cut(s)	220, 408, 478
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	222, 781
HapII	CCGG	4 cut(s)	216, 624, 671, 722
HhaI	GCGC	2 cut(s)	305, 388
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	687, 715
Hin6I	GCGC	2 cut(s)	303, 386
HinP1I	GCGC	2 cut(s)	303, 386
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	4 cut(s)	216, 624, 671, 722
HphI	GGTGA	4 cut(s)	20, 241, 316, 736
Hpy166II	GTNNAC	4 cut(s)	31, 280, 433, 442
Hpy188I	TCNGA	4 cut(s)	101, 290, 731, 743
Hpy188III	TCNNGA	4 cut(s)	21, 84, 586, 636
Hpy8I	GTNNAC	4 cut(s)	31, 280, 433, 442
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	3 cut(s)	327, 798, 813
HpyCH4III	ACNGT	2 cut(s)	18, 598
HpyCH4IV	ACGT	2 cut(s)	225, 823
HpyCH4V	TGCA	2 cut(s)	488, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 407, 680
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	225, 823
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	687, 715
HspAI	GCGC	2 cut(s)	303, 386
KasI	GGCGCC	1 cut(s)	302
Kzo9I	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
LmnI	GCTCC	2 cut(s)	724, 731
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	225, 823
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	6 cut(s)	75, 123, 643, 661, 728, 760
MboI	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
MboII	GAAGA	3 cut(s)	83, 707, 804
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	5 cut(s)	152, 209, 562, 571, 762
Mly113I	GGCGCC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	4, 91, 544, 564, 632
MseI	TTAA	3 cut(s)	312, 473, 826
MslI	CAYNNNNRTG	3 cut(s)	143, 173, 521
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	4 cut(s)	216, 624, 671, 722
MspR9I	CCNGG	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	778
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	251, 407, 680
NarI	GGCGCC	1 cut(s)	303
NdeII	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
NlaIII	CATG	2 cut(s)	687, 715
NlaIV	GGNNCC	3 cut(s)	304, 369, 733
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	221, 409, 479
PluTI	GGCGCC	1 cut(s)	306
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	776
PspCI	CACGTG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	776
PspN4I	GGNNCC	3 cut(s)	304, 369, 733
PspPI	GGNCC	3 cut(s)	551, 626, 668
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	205, 242, 434
RsaNI	GTAC	3 cut(s)	204, 241, 433
RseI	CAYNNNNRTG	3 cut(s)	143, 173, 521
Rsr2I	CGGWCCG	1 cut(s)	626
RsrII	CGGWCCG	1 cut(s)	626
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	312, 473, 826
SatI	GCNGC	3 cut(s)	220, 408, 478
Sau3AI	GATC	6 cut(s)	73, 121, 641, 659, 726, 758
Sau96I	GGNCC	3 cut(s)	551, 626, 668
ScrFI	CCNGG	1 cut(s)	778
SetI	ASST	9 cut(s)	43, 228, 369, 469, 479, 511, 658, 721, 826
SfaNI	GCATC	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	304
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	3 cut(s)	551, 626, 668
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	3 cut(s)	143, 173, 521
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	152, 209, 562, 571, 762
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	7 cut(s)	149, 219, 252, 348, 407, 537, 674
SspDI	GGCGCC	1 cut(s)	302
SspMI	CTAG	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	18, 598
TaiI	ACGT	2 cut(s)	228, 826
TaqI	TCGA	4 cut(s)	30, 83, 644, 658
TaqII	GACCGA	1 cut(s)	643
TasI	AATT	5 cut(s)	152, 209, 562, 571, 762
TauI	GCSGC	2 cut(s)	222, 410
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	312, 473, 826
Tru9I	TTAA	3 cut(s)	312, 473, 826
TscAI	CASTG	2 cut(s)	187, 435
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	477
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	17, 84, 157, 662
TspGWI	ACGGA	3 cut(s)	360, 450, 796
TspRI	CASTG	2 cut(s)	187, 435
VpaK11BI	GGWCC	3 cut(s)	551, 626, 668
XapI	RAATTY	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.