Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Forward (+)

18392709 .. 18395702

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCAAGAAATAAGTACAGCTTTTCTATTGTACATGTTCTTTGCACTTCCCCTTTTTCTGCCCAATAAAAACTCAGTTTTCAAAACAACTTCATCTTCAATCTTAAACTTTGTGTTCCCTTTGGACAGTGCATGGGAAGCAAGTTTGATCATGAAAGGATTATATGAAGAGGCCAAACCATCACCCCAGAATTCAAACTCGGCATCAACTAGCGGCCATTCTAAAGAAGATGATCCAGAGATAGGTTCCAATGCATTGTCAAACAGTGCTGATCATCATGTCTTGAAGAACTCTACCTTCTGTTTTCCACTCGAAATCAATCTAAATCTCTTGCGTGCGGTTGTGGCAGAGATGGTTGGAACTTTTATCTTGATGTTCTGTGTATGTGGGATCATAGCAAGCACACAACTGCTGAGAGGAGAAGTGGGCCTTATGGAGTATGCATCCACAGCAGGTTTAACAGTAGTGGTTGTGATTTTCTCCATAGGCACCATCTCTGGTGCTCATGTTAACCCTGCTGTCACAGTAGCCTTTGCAACCTTAGGTCATTTCCCATGGTCCAGGGTTCCTCTATACACAATGGCACAAACATTGGGTTCTGTTCTGGCAGCACTCGTTGGAAAGCTTGTTTATGGCATAAAATCAGATCTCATGCTCACCAAACCAGTACAAAGCTGTGTTTCTGCCTTCTGGGTGGAGCTTATAGCAACTTTCATAGTTTTGTTCCTTGCTGCTTCTATGATACATCATGCTCAAGCTGTTGGTCCTTTATCTGGATTTGTTCTTGGCATCGCCATTGGACTAGCTGTGCTAATCACCGGGCCTGTTTCAGGAGGATCACTGAACCCAGCAAGGTCCCTCGGACCAGCTATTGTTTCATGGAACTTCAAGGACATTTGGATATACGTTTGTGCCCCAACAATTGGAGCTGTTTCAGGCGCTCTCCTTTTTCAAGTTTTAAAACTTAGAGTCCCACCCTCCAATCCCAGCCTCACCTCCTCTCCTGATACATGTCGACTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

342

Amino Acids

36.18

Weight (kDa)

6.64

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	109 - 317	1.1e-47	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	923
AccI	GTMKAC	1 cut(s)	1015
AciI	CCGC	2 cut(s)	213, 338
AclWI	GGATC	3 cut(s)	227, 398, 844
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	3 cut(s)	16, 32, 669
AfiI	CCNNNNNNNGG	4 cut(s)	242, 773, 830, 923
AflIII	ACRYGT	2 cut(s)	33, 1010
AgsI	TTSAA	6 cut(s)	82, 99, 195, 286, 889, 953
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	8 cut(s)	20, 625, 675, 700, 758, 806, 869, 929
AluI	AGCT	8 cut(s)	20, 625, 675, 700, 758, 806, 869, 929
Alw21I	GWGCWC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	227, 398, 844
AoxI	GGCC	4 cut(s)	171, 214, 427, 821
ApeKI	GCWGC	2 cut(s)	608, 731
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	6 cut(s)	427, 558, 764, 821, 855, 863
AsuC2I	CCSGG	1 cut(s)	820
AsuHPI	GGTGA	4 cut(s)	174, 649, 808, 985
AvaII	GGWCC	4 cut(s)	558, 764, 855, 863
AxyI	CCTNAGG	1 cut(s)	541
BaeGI	GKGCMC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	620, 718
BccI	CCATC	3 cut(s)	187, 346, 500
BciT130I	CCWGG	1 cut(s)	562
BclI	TGATCA	2 cut(s)	147, 271
BcnI	CCSGG	1 cut(s)	820
BfaI	CTAG	2 cut(s)	210, 803
BfoI	RGCGCY	1 cut(s)	942
BfuAI	ACCTGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	3 cut(s)	214, 609, 732
BlsI	GCNGC	3 cut(s)	215, 610, 733
Bme1390I	CCNGG	2 cut(s)	562, 820
Bme18I	GGWCC	4 cut(s)	558, 764, 855, 863
BmgT120I	GGNCC	6 cut(s)	427, 558, 764, 821, 855, 863
BmiI	GGNNCC	4 cut(s)	247, 490, 567, 857
BmrFI	CCNGG	2 cut(s)	562, 820
BmsI	GCATC	3 cut(s)	212, 452, 798
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	820
BsaJI	CCNNGG	3 cut(s)	554, 561, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	985, 1015
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 773, 830, 923
Bse1I	ACTGG	1 cut(s)	665
Bse21I	CCTNAGG	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	3 cut(s)	554, 561, 859
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	4 cut(s)	242, 773, 830, 923
BseMII	CTCAG	2 cut(s)	87, 404
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	2 cut(s)	432, 988
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	2 cut(s)	620, 718
BseYI	CCCAGC	2 cut(s)	847, 986
BshFI	GGCC	4 cut(s)	173, 216, 429, 823
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	819
BslFI	GGGAC	2 cut(s)	841, 956
BslI	CCNNNNNNNGG	4 cut(s)	242, 773, 830, 923
BsmFI	GGGAC	2 cut(s)	841, 956
BsnI	GGCC	4 cut(s)	173, 216, 429, 823
Bsp1286I	GDGCHC	2 cut(s)	505, 916
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	2 cut(s)	213, 338
BspANI	GGCC	4 cut(s)	173, 216, 429, 823
BspCNI	CTCAG	2 cut(s)	86, 405
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	4 cut(s)	247, 490, 567, 857
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	227, 398, 844
BspT107I	GGYRCC	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	554, 561, 859
BssMI	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	4 cut(s)	128, 266, 463, 526
Bst6I	CTCTTC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	336, 400
BstDEI	CTNAG	4 cut(s)	73, 413, 541, 965
BstDSI	CCRYGG	1 cut(s)	554
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstF5I	GGATG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	942
BstHHI	GCGC	1 cut(s)	941
BstKTI	GATC	6 cut(s)	150, 235, 274, 393, 649, 839
BstMBI	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 344, 449
BstNI	CCWGG	1 cut(s)	562
BstNSI	RCATGY	2 cut(s)	37, 1014
BstSCI	CCNGG	2 cut(s)	560, 818
BstSLI	GKGCMC	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	620, 718
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	173, 216, 429, 823
BtgI	CCRYGG	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	775
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	3 cut(s)	133, 271, 839
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	336, 400
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	941
Cfr13I	GGNCC	6 cut(s)	427, 558, 764, 821, 855, 863
Csp6I	GTAC	3 cut(s)	15, 31, 668
CviQI	GTAC	3 cut(s)	15, 31, 668
DdeI	CTNAG	4 cut(s)	73, 413, 541, 965
DpnI	GATC	6 cut(s)	149, 234, 273, 392, 648, 838
DpnII	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
DraI	TTTAAA	1 cut(s)	960
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	554
Eco47I	GGWCC	4 cut(s)	558, 764, 855, 863
Eco81I	CCTNAGG	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	855
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	2 cut(s)	256, 445
ErhI	CCWWGG	1 cut(s)	554
FalI	AAGNNNNNCTT	3 cut(s)	36, 414, 446
FaqI	GGGAC	2 cut(s)	841, 956
FbaI	TGATCA	2 cut(s)	147, 271
FblI	GTMKAC	1 cut(s)	1015
Fnu4HI	GCNGC	3 cut(s)	214, 609, 732
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	214, 609, 732
FspBI	CTAG	2 cut(s)	210, 803
GlaI	GCGC	1 cut(s)	940
GluI	GCNGC	3 cut(s)	214, 609, 732
GsaI	CCCAGC	2 cut(s)	851, 990
HaeII	RGCGCY	1 cut(s)	942
HaeIII	GGCC	4 cut(s)	173, 216, 429, 823
HapII	CCGG	1 cut(s)	819
HhaI	GCGC	1 cut(s)	941
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HincII	GTYRAC	2 cut(s)	511, 1016
HindII	GTYRAC	2 cut(s)	511, 1016
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	1 cut(s)	969
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	819
HphI	GGTGA	4 cut(s)	174, 649, 808, 985
Hpy166II	GTNNAC	2 cut(s)	511, 1016
Hpy188I	TCNGA	2 cut(s)	646, 863
Hpy188III	TCNNGA	7 cut(s)	151, 236, 283, 370, 774, 831, 1004
Hpy8I	GTNNAC	2 cut(s)	511, 1016
HpyAV	CCTTC	2 cut(s)	307, 697
HpyCH4III	ACNGT	4 cut(s)	128, 266, 463, 526
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	6 cut(s)	4, 44, 131, 254, 443, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 344, 449
HpyF3I	CTNAG	4 cut(s)	73, 413, 541, 965
HpySE526I	ACGT	1 cut(s)	906
HspAI	GCGC	1 cut(s)	939
Ksp22I	TGATCA	2 cut(s)	147, 271
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
LmnI	GCTCC	2 cut(s)	697, 926
Lsp1109I	GCAGC	2 cut(s)	620, 718
LweI	GCATC	3 cut(s)	212, 452, 798
MaeI	CTAG	2 cut(s)	210, 803
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	6 cut(s)	149, 234, 273, 392, 648, 838
MboI	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
MboII	GAAGA	4 cut(s)	87, 179, 239, 298
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	505, 916
MluCI	AATT	2 cut(s)	190, 921
MlyI	GAGTC	1 cut(s)	978
MmeI	TCCRAC	2 cut(s)	337, 598
MnlI	CCTC	9 cut(s)	163, 410, 579, 827, 869, 988, 1001, 1006, 1009
Mph1103I	ATGCAT	2 cut(s)	256, 445
MseI	TTAA	4 cut(s)	104, 458, 510, 959
MspI	CCGG	1 cut(s)	819
MspR9I	CCNGG	2 cut(s)	562, 820
MunI	CAATTG	1 cut(s)	921
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	137, 344, 449
NciI	CCSGG	1 cut(s)	820
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
NlaIV	GGNNCC	4 cut(s)	247, 490, 567, 857
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	520
NsiI	ATGCAT	2 cut(s)	256, 445
NspI	RCATGY	2 cut(s)	37, 1014
PagI	TCATGA	1 cut(s)	150
PciI	ACATGT	2 cut(s)	33, 1010
PflMI	CCANNNNNTGG	1 cut(s)	923
PkrI	GCNGC	3 cut(s)	215, 610, 733
PleI	GAGTC	1 cut(s)	977
PpsI	GAGTC	1 cut(s)	977
PpuMI	RGGWCCY	1 cut(s)	855
PscI	ACATGT	2 cut(s)	33, 1010
Psp5II	RGGWCCY	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	560
PspFI	CCCAGC	2 cut(s)	847, 986
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	4 cut(s)	247, 490, 567, 857
PspPI	GGNCC	6 cut(s)	427, 558, 764, 821, 855, 863
PspPPI	RGGWCCY	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	3 cut(s)	16, 32, 669
RsaNI	GTAC	3 cut(s)	15, 31, 668
SalI	GTCGAC	1 cut(s)	1014
SaqAI	TTAA	4 cut(s)	104, 458, 510, 959
SatI	GCNGC	3 cut(s)	214, 609, 732
Sau3AI	GATC	6 cut(s)	147, 232, 271, 390, 646, 836
Sau96I	GGNCC	6 cut(s)	427, 558, 764, 821, 855, 863
SchI	GAGTC	1 cut(s)	978
ScrFI	CCNGG	2 cut(s)	562, 820
SduI	GDGCHC	2 cut(s)	505, 916
SfaNI	GCATC	3 cut(s)	212, 452, 798
SinI	GGWCC	4 cut(s)	558, 764, 855, 863
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
Sse9I	AATT	2 cut(s)	190, 921
SsiI	CCGC	2 cut(s)	213, 338
SspMI	CTAG	2 cut(s)	210, 803
StyD4I	CCNGG	2 cut(s)	560, 818
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	4 cut(s)	128, 266, 463, 526
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	312, 1015
TasI	AATT	2 cut(s)	190, 921
TatI	WGTACW	3 cut(s)	14, 30, 667
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	4 cut(s)	104, 458, 510, 959
Tru9I	TTAA	4 cut(s)	104, 458, 510, 959
TscAI	CASTG	3 cut(s)	133, 271, 846
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	608, 731
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	5 cut(s)	81, 167, 180, 703, 867
TspRI	CASTG	3 cut(s)	133, 271, 846
Van91I	CCANNNNNTGG	1 cut(s)	923
VpaK11BI	GGWCC	4 cut(s)	558, 764, 855, 863
XagI	CCTNNNNNAGG	1 cut(s)	828
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	2 cut(s)	37, 1014
XmiI	GTMKAC	1 cut(s)	1015
XspI	CTAG	2 cut(s)	210, 803
Zsp2I	ATGCAT	2 cut(s)	256, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.