Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004911.1

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Forward (+)

20460 .. 22468

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004911.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgaaaggattatatgaagaggccaaaccatcaccccaaatttcaaactccgcgtcaactagcggccattctaaagaagatgatccagaaatgggttccaatgcattgtcaaacagtgcagatcatcatgtcttgaacaactctgccttcttctgttttccaagcggaatgaatttaaatctcgtgcgtgcggttgtggcggagatggttggaacttttatcttgatgttctgtgtatgtgggatcatagcaagcacagagctgctgagaggagatgtaggtcttatggagtatgcatccacagcgggtttaacagttgtagttgtgattttctccgtaggctccatctctggtgctcatgttaaccctgctgtcacagtagcctttgcaacctttggtcatttcccatggtccagggttcctctatacacattggcacaaacattgggttctgttctggcagcattcgttggaaagcttgtgtatggcataaaaccagatctcatgatcaccaaaccagtgcaaggatgtgtttctgccttctgggttgagcttattgcgactttcattgttttgttccttgctgcttctatgacacatcatgctcaagctttcatgtacgagtttggtcttttgcaggttggtcctttatctgggtttgttgttggcattgccattggactagctgtgctaatcacagggcctgtttcaggaggatcattgaacccagcaaggtccctcggaccagcgattgtttcatggaacttcaaggacatttggatatacatttgtgccccaaccattggagctgttgcaggggctctcctttttcaagttttaagactcagaatcccaccatgcaatcccagcctcacctcctctcctaatacctgtctacttgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

301

Amino Acids

31.64

Weight (kDa)

6.36

Isoelectric Point (pI)

22.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	1 cut(s)	53
AciI	CCGC	6 cut(s)	51, 63, 165, 191, 200, 305
AclWI	GGATC	3 cut(s)	77, 251, 724
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	39, 172
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	5 cut(s)	92, 524, 653, 710, 803
AgsI	TTSAA	5 cut(s)	45, 136, 724, 769, 833
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	6 cut(s)	262, 478, 553, 611, 686, 809
AluI	AGCT	6 cut(s)	262, 478, 553, 611, 686, 809
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	77, 251, 724
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	21, 64, 701
ApeKI	GCWGC	3 cut(s)	262, 461, 584
ApoI	RAATTY	2 cut(s)	39, 172
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	5 cut(s)	411, 644, 701, 735, 743
AsuHPI	GGTGA	3 cut(s)	24, 502, 865
AvaII	GGWCC	4 cut(s)	411, 644, 735, 743
BaeGI	GKGCMC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	823
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	3 cut(s)	249, 473, 571
BccI	CCATC	3 cut(s)	37, 199, 353
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	2 cut(s)	60, 683
BfuAI	ACCTGC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	64, 263, 462, 585
BlsI	GCNGC	4 cut(s)	65, 264, 463, 586
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	4 cut(s)	411, 644, 735, 743
BmgT120I	GGNCC	5 cut(s)	411, 644, 701, 735, 743
BmiI	GGNNCC	4 cut(s)	97, 343, 420, 737
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	407, 414, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 524, 653, 710, 803
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	407, 414, 739
BseGI	GGATG	2 cut(s)	296, 533
BseLI	CCNNNNNNNGG	5 cut(s)	92, 524, 653, 710, 803
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	257, 859
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	2 cut(s)	285, 868
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	3 cut(s)	249, 473, 571
BseYI	CCCAGC	2 cut(s)	727, 866
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	23, 66, 703
BsiHKAI	GWGCWC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	5 cut(s)	92, 524, 653, 710, 803
BsmFI	GGGAC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	23, 66, 703
Bsp1286I	GDGCHC	3 cut(s)	358, 796, 823
Bsp143I	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	6 cut(s)	51, 63, 165, 191, 200, 305
BspANI	GGCC	3 cut(s)	23, 66, 703
BspCNI	CTCAG	2 cut(s)	258, 858
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	4 cut(s)	97, 343, 420, 737
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	3 cut(s)	77, 251, 724
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	407, 414, 739
BssMI	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	407
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	3 cut(s)	116, 316, 379
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	189, 253
BstDEI	CTNAG	2 cut(s)	266, 845
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	296, 533
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	6 cut(s)	85, 124, 246, 502, 510, 719
BstMBI	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 302, 867
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	796
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	249, 473, 571
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	23, 66, 703
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	296, 533
BtsIMutI	CAGTG	2 cut(s)	121, 525
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	189, 253
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	5 cut(s)	411, 644, 701, 735, 743
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	8 cut(s)	128, 359, 408, 505, 602, 616, 759, 858
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	2 cut(s)	266, 845
DpnI	GATC	6 cut(s)	84, 123, 245, 501, 509, 718
DpnII	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	823
Eco47I	GGWCC	4 cut(s)	411, 644, 735, 743
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO109I	RGGNCCY	2 cut(s)	701, 735
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	407
EcoT22I	ATGCAT	2 cut(s)	106, 298
EcoT38I	GRGCYC	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	8 cut(s)	131, 362, 411, 508, 605, 619, 762, 861
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	8 cut(s)	127, 358, 407, 504, 601, 615, 758, 857
FauI	CCCGC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	4 cut(s)	64, 263, 462, 585
FokI	GGATG	2 cut(s)	283, 540
FriOI	GRGCYC	1 cut(s)	823
Fsp4HI	GCNGC	4 cut(s)	64, 263, 462, 585
FspBI	CTAG	2 cut(s)	60, 683
GluI	GCNGC	4 cut(s)	64, 263, 462, 585
GsaI	CCCAGC	2 cut(s)	731, 870
HaeIII	GGCC	3 cut(s)	23, 66, 703
HgaI	GACGC	1 cut(s)	42
Hin1II	CATG	8 cut(s)	131, 362, 411, 508, 605, 619, 762, 861
HincII	GTYRAC	2 cut(s)	57, 364
HindII	GTYRAC	2 cut(s)	57, 364
HindIII	AAGCTT	2 cut(s)	476, 609
HinfI	GANTC	2 cut(s)	843, 849
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	3 cut(s)	24, 502, 865
Hpy166II	GTNNAC	3 cut(s)	57, 364, 896
Hpy188I	TCNGA	2 cut(s)	743, 848
Hpy188III	TCNNGA	5 cut(s)	86, 133, 223, 505, 711
Hpy8I	GTNNAC	3 cut(s)	57, 364, 896
HpyAV	CCTTC	2 cut(s)	157, 550
HpyCH4III	ACNGT	3 cut(s)	116, 316, 379
HpyCH4V	TGCA	8 cut(s)	104, 119, 296, 389, 523, 637, 815, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 302, 867
HpyF3I	CTNAG	2 cut(s)	266, 845
Hsp92II	CATG	8 cut(s)	131, 362, 411, 508, 605, 619, 762, 861
Ksp22I	TGATCA	1 cut(s)	507
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
LmnI	GCTCC	2 cut(s)	347, 806
Lsp1109I	GCAGC	3 cut(s)	249, 473, 571
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	60, 683
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	6 cut(s)	84, 123, 245, 501, 509, 718
MboI	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
MboII	GAAGA	3 cut(s)	29, 89, 142
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	358, 796, 823
MluCI	AATT	2 cut(s)	39, 172
MlyI	GAGTC	1 cut(s)	837
MmeI	TCCRAC	2 cut(s)	190, 451
MnlI	CCTC	8 cut(s)	13, 263, 432, 707, 749, 881, 886, 889
Mph1103I	ATGCAT	2 cut(s)	106, 298
MseI	TTAA	4 cut(s)	176, 311, 363, 839
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	197, 302, 867
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
NlaIII	CATG	8 cut(s)	131, 362, 411, 508, 605, 619, 762, 861
NlaIV	GGNNCC	4 cut(s)	97, 343, 420, 737
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	2 cut(s)	106, 298
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	849
PflMI	CCANNNNNTGG	1 cut(s)	803
PkrI	GCNGC	4 cut(s)	65, 264, 463, 586
PleI	GAGTC	1 cut(s)	837
PpsI	GAGTC	1 cut(s)	837
PpuMI	RGGWCCY	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	2 cut(s)	727, 866
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	4 cut(s)	97, 343, 420, 737
PspPI	GGNCC	5 cut(s)	411, 644, 701, 735, 743
PspPPI	RGGWCCY	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SaqAI	TTAA	4 cut(s)	176, 311, 363, 839
SatI	GCNGC	4 cut(s)	64, 263, 462, 585
Sau3AI	GATC	6 cut(s)	82, 121, 243, 499, 507, 716
Sau96I	GGNCC	5 cut(s)	411, 644, 701, 735, 743
SchI	GAGTC	1 cut(s)	837
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	3 cut(s)	358, 796, 823
SfaNI	GCATC	1 cut(s)	305
SinI	GGWCC	4 cut(s)	411, 644, 735, 743
SmiI	ATTTAAAT	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	2 cut(s)	39, 172
SsiI	CCGC	6 cut(s)	51, 63, 165, 191, 200, 305
SspMI	CTAG	2 cut(s)	60, 683
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	407
SwaI	ATTTAAAT	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	116, 316, 379
TasI	AATT	2 cut(s)	39, 172
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	849
Tru1I	TTAA	4 cut(s)	176, 311, 363, 839
Tru9I	TTAA	4 cut(s)	176, 311, 363, 839
TscAI	CASTG	2 cut(s)	121, 525
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	262, 461, 584
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	6 cut(s)	17, 30, 185, 556, 604, 747
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	121, 525
Van91I	CCANNNNNTGG	1 cut(s)	803
VpaK11BI	GGWCC	4 cut(s)	411, 644, 735, 743
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	2 cut(s)	39, 172
XmiI	GTMKAC	1 cut(s)	895
XspI	CTAG	2 cut(s)	60, 683
Zsp2I	ATGCAT	2 cut(s)	106, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.