Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Forward (+)

12023075 .. 12025235

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G152300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAAGCCTTTTCTAAAGATGAAATTTCTGTTCCATCTCCTCAAACTTCAAACTGCACATCAACTAGTGACCATTCTAATAAAGATGATCAAGAAATGGGCTCTAATGCAATGTCGGATGAGGGAGAGGTCTCGAACAACTCAGCCTTCTTCTGTTTCCCATTCCACATGGATCTAAATCTCGTTCGCGCGGTTTTTGCAGAGATGGTGGGGACTTTTATGTTGATGTTCTGTGTATGTGGGATCATAGCAAGCACACAGCTGATGAGAGGGGAAGTTGGTCTTATGGAGTATGCAGCCACAGCAGGTTTAACTGTAGTTGTTGTTATTTTCTCCATAGGCTCAATTTCTGGTGCTCATGTCAACCCAGCTGTCACAGTAGCATTTGCAACCCTTGGTCATTTCCCATGGTGCAGGGTTCCTGTTTACATATTGGCTCAAACAATGGGTTCTGTTCTGGCAACATACATTGGGAGGCTTGTCTATGGCATAAAACCAGATCTCATGACCACCAGACCACTTCAAAGCCCTGCCGCTGCCTTCTGCGTTGAGCTTATTGCAACTTTCATGATTATGTTCCTAGCTGCTTCATTGACACATCAAGCTCATGCTGTTGGCTATTTGTCTGGATTTGTAGTTGGCATTGCCATTGGACTTTCTGTGCTCATCACAGGGCCTGTTTCAGGAGGGTCAATGAACCCAGCAAGGTCACTGGGGCCTGCAATTGTTGCATGGAACTTCCAAGACCTATGGATATATATTTGTGGCCCAACAATTGGAGCTGTTGCAGGTGCTCGCCTGTTTCAAATTCTACGCCTTCAGCCCTGCAGTCCCAGCAACACTTCCTCTTCCAATATCCGTCTGCTAGGCCAACCCTTGCCCTATGAAGCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

299

Amino Acids

31.67

Weight (kDa)

5.82

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	2 cut(s)	296, 779
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccII	CGCG	2 cut(s)	189, 191
AciI	CCGC	2 cut(s)	191, 534
AclWI	GGATC	2 cut(s)	180, 251
AcsI	RAATTY	2 cut(s)	24, 807
AcuI	CTGAAG	1 cut(s)	803
AfiI	CCNNNNNNNGG	2 cut(s)	683, 776
AgsI	TTSAA	3 cut(s)	51, 524, 806
AhlI	ACTAGT	1 cut(s)	65
AluBI	AGCT	6 cut(s)	262, 371, 553, 584, 605, 782
AluI	AGCT	6 cut(s)	262, 371, 553, 584, 605, 782
Alw21I	GWGCWC	3 cut(s)	358, 666, 796
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	180, 251
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	4 cut(s)	674, 716, 766, 868
ApeKI	GCWGC	3 cut(s)	296, 536, 584
ApoI	RAATTY	2 cut(s)	24, 807
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	674, 716, 767
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	3 cut(s)	358, 666, 796
BbvI	GCAGC	3 cut(s)	308, 523, 571
BccI	CCATC	2 cut(s)	43, 199
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	3 cut(s)	66, 581, 866
BfmI	CTRYAG	2 cut(s)	315, 826
BfuAI	ACCTGC	2 cut(s)	296, 779
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	297, 534, 537, 585
BlsI	GCNGC	4 cut(s)	298, 535, 538, 586
BmgT120I	GGNCC	3 cut(s)	674, 716, 767
BmiI	GGNNCC	2 cut(s)	420, 717
BmrI	ACTGGG	1 cut(s)	722
BmuI	ACTGGG	1 cut(s)	722
BsaBI	GATNNNNATC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	394, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 776
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	2 cut(s)	117, 642
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	394, 407
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	683, 776
BseMI	GCAATG	2 cut(s)	117, 642
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	308, 523, 571
BseYI	CCCAGC	3 cut(s)	367, 700, 833
BsgI	GTGCAG	2 cut(s)	40, 433
Bsh1236I	CGCG	2 cut(s)	189, 191
BshFI	GGCC	4 cut(s)	676, 718, 768, 870
BsiHKAI	GWGCWC	3 cut(s)	358, 666, 796
BslFI	GGGAC	2 cut(s)	226, 816
BslI	CCNNNNNNNGG	2 cut(s)	683, 776
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	226, 816
BsnI	GGCC	4 cut(s)	676, 718, 768, 870
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	4 cut(s)	104, 358, 666, 796
Bsp143I	GATC	4 cut(s)	88, 172, 243, 499
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	2 cut(s)	191, 534
BspANI	GGCC	4 cut(s)	676, 718, 768, 870
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	2 cut(s)	189, 191
BspHI	TCATGA	2 cut(s)	504, 567
BspLI	GGNNCC	2 cut(s)	420, 717
BspMAI	CTGCAG	1 cut(s)	830
BspMI	ACCTGC	2 cut(s)	296, 779
BspPI	GGATC	2 cut(s)	180, 251
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	117, 642
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	2 cut(s)	394, 407
BssMI	GATC	4 cut(s)	88, 172, 243, 499
BssT1I	CCWWGG	2 cut(s)	394, 407
Bst4CI	ACNGT	2 cut(s)	316, 379
Bst6I	CTCTTC	1 cut(s)	853
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	253, 720, 796
BstDEI	CTNAG	2 cut(s)	142, 894
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	2 cut(s)	189, 191
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	91, 175, 246, 502
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	4 cut(s)	88, 172, 243, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 302, 728, 834
BstSFI	CTRYAG	2 cut(s)	315, 826
BstUI	CGCG	2 cut(s)	189, 191
BstV1I	GCAGC	3 cut(s)	308, 523, 571
BstX2I	RGATCY	2 cut(s)	172, 499
BstYI	RGATCY	2 cut(s)	172, 499
BsuRI	GGCC	4 cut(s)	676, 718, 768, 870
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	710
BveI	ACCTGC	2 cut(s)	296, 779
Cac8I	GCNNGC	3 cut(s)	253, 720, 796
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	2 cut(s)	504, 567
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	674, 716, 767
CviAII	CATG	7 cut(s)	169, 359, 408, 505, 568, 608, 732
DdeI	CTNAG	2 cut(s)	142, 894
DpnI	GATC	4 cut(s)	90, 174, 245, 501
DpnII	GATC	4 cut(s)	88, 172, 243, 499
Eam1104I	CTCTTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	853
Eco130I	CCWWGG	2 cut(s)	394, 407
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	803
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoO109I	RGGNCCY	2 cut(s)	674, 716
EcoT14I	CCWWGG	2 cut(s)	394, 407
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	394, 407
FaeI	CATG	7 cut(s)	172, 362, 411, 508, 571, 611, 735
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	226, 816
FatI	CATG	7 cut(s)	168, 358, 407, 504, 567, 607, 731
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	297, 534, 537, 585
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	297, 534, 537, 585
FspBI	CTAG	3 cut(s)	66, 581, 866
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	297, 534, 537, 585
GsaI	CCCAGC	3 cut(s)	371, 704, 837
HaeIII	GGCC	4 cut(s)	676, 718, 768, 870
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	7 cut(s)	172, 362, 411, 508, 571, 611, 735
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	364, 427
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	6 cut(s)	92, 133, 505, 568, 627, 684
Hpy8I	GTNNAC	2 cut(s)	364, 427
HpyAV	CCTTC	3 cut(s)	157, 550, 827
HpyCH4III	ACNGT	2 cut(s)	316, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 302, 728, 834
HpyF3I	CTNAG	2 cut(s)	142, 894
Hsp92II	CATG	7 cut(s)	172, 362, 411, 508, 571, 611, 735
HspAI	GCGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 172, 243, 499
LmnI	GCTCC	1 cut(s)	779
Lsp1109I	GCAGC	3 cut(s)	308, 523, 571
MaeI	CTAG	3 cut(s)	66, 581, 866
MaeIII	GTNAC	3 cut(s)	68, 373, 708
MalI	GATC	4 cut(s)	90, 174, 245, 501
MboI	GATC	4 cut(s)	88, 172, 243, 499
MboII	GAAGA	2 cut(s)	142, 840
MfeI	CAATTG	2 cut(s)	723, 774
MflI	RGATCY	2 cut(s)	172, 499
MhlI	GDGCHC	4 cut(s)	104, 358, 666, 796
MluCI	AATT	5 cut(s)	24, 345, 723, 774, 807
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	51, 115, 121, 263, 468, 680, 856
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	3 cut(s)	262, 371, 536
MunI	CAATTG	2 cut(s)	723, 774
MvnI	CGCG	2 cut(s)	189, 191
MwoI	GCNNNNNNNGC	4 cut(s)	197, 302, 728, 834
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	4 cut(s)	88, 172, 243, 499
NlaIII	CATG	7 cut(s)	172, 362, 411, 508, 571, 611, 735
NlaIV	GGNNCC	2 cut(s)	420, 717
NmuCI	GTSAC	3 cut(s)	68, 373, 708
PagI	TCATGA	2 cut(s)	504, 567
PaqCI	CACCTGC	1 cut(s)	779
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	298, 535, 538, 586
PspFI	CCCAGC	3 cut(s)	367, 700, 833
PspN4I	GGNNCC	2 cut(s)	420, 717
PspPI	GGNCC	3 cut(s)	674, 716, 767
PstI	CTGCAG	1 cut(s)	830
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	172, 499
PvuII	CAGCTG	2 cut(s)	262, 371
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	4 cut(s)	297, 534, 537, 585
Sau3AI	GATC	4 cut(s)	88, 172, 243, 499
Sau96I	GGNCC	3 cut(s)	674, 716, 767
SduI	GDGCHC	4 cut(s)	104, 358, 666, 796
SfcI	CTRYAG	2 cut(s)	315, 826
SmiMI	CAYNNNNRTG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	5 cut(s)	24, 345, 723, 774, 807
SsiI	CCGC	2 cut(s)	191, 534
SspMI	CTAG	3 cut(s)	66, 581, 866
StyI	CCWWGG	2 cut(s)	394, 407
TaaI	ACNGT	2 cut(s)	316, 379
TaqI	TCGA	1 cut(s)	134
TasI	AATT	5 cut(s)	24, 345, 723, 774, 807
TauI	GCSGC	1 cut(s)	536
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	3 cut(s)	68, 373, 708
TseI	GCWGC	3 cut(s)	296, 536, 584
Tsp45I	GTSAC	3 cut(s)	68, 373, 708
TspDTI	ATGAA	5 cut(s)	17, 36, 556, 579, 710
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	1 cut(s)	717
Van91I	CCANNNNNTGG	1 cut(s)	776
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	24, 807
XspI	CTAG	3 cut(s)	66, 581, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.