Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Reverse (-)

50572723 .. 50574846

Gene Structure 2124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG212300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAAGGATTATATGAAGAGGCCAAACCATCACCCCAAATTTCAAACTCCGCATCAACTAGCGGCCATTCTAAAGAAGATGATCTAGAAATGGGTTCCAATGCATTGTCAAACAGTGCAGATCATCATGTCTTGAACAACTCTGCCTTCTTCTGTTTTCCAAGCGGAATGAATTTAAATCTCGTGCGTGCGGTTGTGGCGGAGATGGTTGGAACTTTTATCTTGATGTTCTGTGTATGTGGGATCATAGCAAGCACAGAGCTGCTGAGAGGAGATGTAGGTCTTATGGAGTATGCATCCACAGCTGGTTTAACAGTTGTAGTTGTGATTTTCTCCGTAGGCTCCATCTCTGGTGCTCATGTTAACCCTGCTGTCACAGTAGCCTTTGCAACCTTTGGTCATTTCCCATGGTCCAGGGTTCCTCTATACACATTGGCACAAACATTGGGTTCTGTTCTGGCAGCATTCGTTGGAAAGCTTGTGTATGGCATAAAACCAGATCTCATGATCACCAAACCAGTACAAGGATGTGTTTCTGCCTTCTGGGTTGAGCTTTTTGCGACTTTCATTGTTTTGTTCCTTGCTGCTTCTATGACACATCATGCTCAAGCTGTTGGTCCTTTATCTGGGTTTGTTGTTGGCATTGCCATTGGACTAGCTGTGCTAATCACAGGAATAGACATCAGCTGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

231

Amino Acids

24.22

Weight (kDa)

5.72

Isoelectric Point (pI)

15.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	59 - 224	2.5e-27	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	51, 63, 165, 191, 200
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	39, 172
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	524, 626
AgsI	TTSAA	2 cut(s)	45, 136
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	7 cut(s)	262, 305, 478, 553, 611, 659, 687
AluI	AGCT	7 cut(s)	262, 305, 478, 553, 611, 659, 687
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	21, 64
ApeKI	GCWGC	4 cut(s)	262, 461, 584, 687
ApoI	RAATTY	2 cut(s)	39, 172
AspS9I	GGNCC	2 cut(s)	411, 617
AsuHPI	GGTGA	2 cut(s)	24, 502
AvaII	GGWCC	2 cut(s)	411, 617
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	249, 473, 571, 674
BccI	CCATC	3 cut(s)	37, 199, 353
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	3 cut(s)	60, 86, 656
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	5 cut(s)	64, 263, 462, 585, 688
BlsI	GCNGC	5 cut(s)	65, 264, 463, 586, 689
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	2 cut(s)	411, 617
BmgT120I	GGNCC	2 cut(s)	411, 617
BmiI	GGNNCC	3 cut(s)	97, 343, 420
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	62, 305
BpuEI	CTTGAG	1 cut(s)	591
BsaJI	CCNNGG	2 cut(s)	407, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 626
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	407, 414
BseGI	GGATG	2 cut(s)	296, 533
BseLI	CCNNNNNNNGG	2 cut(s)	524, 626
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	4 cut(s)	249, 473, 571, 674
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	23, 66
BsiHKAI	GWGCWC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	524, 626
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	23, 66
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	82, 121, 243, 499, 507
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	5 cut(s)	51, 63, 165, 191, 200
BspANI	GGCC	2 cut(s)	23, 66
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	3 cut(s)	97, 343, 420
BspPI	GGATC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	407, 414
BssMI	GATC	5 cut(s)	82, 121, 243, 499, 507
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	407
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	3 cut(s)	116, 316, 379
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	189, 253
BstDEI	CTNAG	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	296, 533
BstKTI	GATC	5 cut(s)	85, 124, 246, 502, 510
BstMBI	GATC	5 cut(s)	82, 121, 243, 499, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 302
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstV1I	GCAGC	4 cut(s)	249, 473, 571, 674
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	23, 66
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	296, 533
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	189, 253
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	411, 617
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	5 cut(s)	128, 359, 408, 505, 602
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	5 cut(s)	84, 123, 245, 501, 509
DpnII	GATC	5 cut(s)	82, 121, 243, 499, 507
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	411, 617
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	407
EcoT22I	ATGCAT	2 cut(s)	106, 298
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	5 cut(s)	131, 362, 411, 508, 605
FatI	CATG	5 cut(s)	127, 358, 407, 504, 601
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	5 cut(s)	64, 263, 462, 585, 688
FokI	GGATG	2 cut(s)	283, 540
Fsp4HI	GCNGC	5 cut(s)	64, 263, 462, 585, 688
FspBI	CTAG	3 cut(s)	60, 86, 656
GluI	GCNGC	5 cut(s)	64, 263, 462, 585, 688
HaeIII	GGCC	2 cut(s)	23, 66
Hin1II	CATG	5 cut(s)	131, 362, 411, 508, 605
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	476
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	2 cut(s)	24, 502
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188III	TCNNGA	4 cut(s)	86, 133, 223, 505
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	157, 550
HpyCH4III	ACNGT	3 cut(s)	116, 316, 379
HpyCH4V	TGCA	5 cut(s)	104, 119, 296, 389, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 302
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	5 cut(s)	131, 362, 411, 508, 605
Ksp22I	TGATCA	1 cut(s)	507
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	82, 121, 243, 499, 507
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	4 cut(s)	249, 473, 571, 674
LweI	GCATC	2 cut(s)	62, 305
MaeI	CTAG	3 cut(s)	60, 86, 656
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	5 cut(s)	84, 123, 245, 501, 509
MboI	GATC	5 cut(s)	82, 121, 243, 499, 507
MboII	GAAGA	3 cut(s)	29, 89, 142
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	2 cut(s)	39, 172
MmeI	TCCRAC	2 cut(s)	190, 451
MnlI	CCTC	3 cut(s)	13, 263, 432
Mph1103I	ATGCAT	2 cut(s)	106, 298
MseI	TTAA	3 cut(s)	176, 311, 363
MspA1I	CMGCKG	2 cut(s)	305, 687
MspR9I	CCNGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	197, 302
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	5 cut(s)	82, 121, 243, 499, 507
NlaIII	CATG	5 cut(s)	131, 362, 411, 508, 605
NlaIV	GGNNCC	3 cut(s)	97, 343, 420
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	2 cut(s)	106, 298
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	464
PkrI	GCNGC	5 cut(s)	65, 264, 463, 586, 689
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	97, 343, 420
PspPI	GGNCC	2 cut(s)	411, 617
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	2 cut(s)	305, 687
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	176, 311, 363
SatI	GCNGC	5 cut(s)	64, 263, 462, 585, 688
Sau3AI	GATC	5 cut(s)	82, 121, 243, 499, 507
Sau96I	GGNCC	2 cut(s)	411, 617
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	9 cut(s)	264, 283, 307, 395, 480, 555, 613, 661, 689
SfaNI	GCATC	2 cut(s)	62, 305
SinI	GGWCC	2 cut(s)	411, 617
SmiI	ATTTAAAT	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	2 cut(s)	39, 172
SsiI	CCGC	5 cut(s)	51, 63, 165, 191, 200
SspMI	CTAG	3 cut(s)	60, 86, 656
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	407
SwaI	ATTTAAAT	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	116, 316, 379
TasI	AATT	2 cut(s)	39, 172
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	176, 311, 363
Tru9I	TTAA	3 cut(s)	176, 311, 363
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	4 cut(s)	262, 461, 584, 687
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	4 cut(s)	17, 30, 185, 556
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	411, 617
XapI	RAATTY	2 cut(s)	39, 172
XbaI	TCTAGA	1 cut(s)	85
XspI	CTAG	3 cut(s)	60, 86, 656
Zsp2I	ATGCAT	2 cut(s)	106, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.