Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Reverse (-)

40212030 .. 40214185

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAAGAAATACGTACTGCTTTTCTATTGTACATGTTCTTTGCACTTCCCCTTTTTCAAGCCAAACCATCACCCCAAATTTCAAACTCCGCGTCAACTAGCGGCCATTCTAAAGAAGATGATCCAGAAATGGGTTCCAATGCATTGTCAAACAGTGCAGATCATCATGTCTTGAACAACTCTGCCTTCTTCTGTTTTCCAAGCGGAATGAATTTAAATCTCGTGCGTGCGGTTGTGGCGGAGATGGTTGGAACTTTTATCTTGATGTTCTGTGTATGTGGGATCATAGCAAGCACAGAGCTGCTGAGAGGAGATGTAGGTCTTATGGAGTATGCATCCACAGCGGGTTTAACAGTTGTAGTTGTGATTTTCTCCGTAGGCTCCATCTCTGGTGCTCATGTTAACCCTGCTGTCACAGTAGCCTTTGCAACCTTTGGTCATTTCCCATGGTCCAGGGTTCCTCTATACACATTGGCACAAACATTGGGTTCTGTACTGGCAGCATTCGTTGGAAAGCTTGTGTATGGCATAAAACCAGATCTCATGATCACCAAACCAGTACAAGGATGTGTTTCTGCCTTCTGGGTTGAGCTTATTGCGACTTTCATTGTTTTGTTCCTTGCTGCTTCTATGACACATCATGCTCAAGCTGTTGGTCCTTTATCTGGGTTTGTTGTTGGCATTGCCATTGGACTAGCTGTGCTAATCACAGGGCCTGTTTCAGGAGGATCATTGAACCCAGCAAGGTCCCTCGGACCAGCGATTGTTTCATGGAACTTCAAGGACATTTGGATATACATTTGTGCCCCAACCATTGGAGCTGTTGCAGGGGCTCTCCTTTTTCAAGTTTTAAGACTCAGAATCCCACCATGCAATCCCAGCCTCACCTCCTCTCCTAATACCTGTCTACTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

305

Amino Acids

32.12

Weight (kDa)

7.03

Isoelectric Point (pI)

23.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	72 - 281	4.1e-48	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	907
AccII	CGCG	1 cut(s)	92
AciI	CCGC	6 cut(s)	90, 102, 204, 230, 239, 344
AclWI	GGATC	3 cut(s)	116, 290, 736
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	78, 211
AfaI	GTAC	4 cut(s)	16, 32, 495, 561
AfiI	CCNNNNNNNGG	5 cut(s)	131, 563, 665, 722, 815
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	6 cut(s)	59, 84, 175, 736, 781, 845
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	6 cut(s)	301, 517, 592, 650, 698, 821
AluI	AGCT	6 cut(s)	301, 517, 592, 650, 698, 821
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	3 cut(s)	116, 290, 736
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	2 cut(s)	103, 713
ApeKI	GCWGC	3 cut(s)	301, 500, 623
ApoI	RAATTY	2 cut(s)	78, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspS9I	GGNCC	5 cut(s)	450, 656, 713, 747, 755
AsuHPI	GGTGA	3 cut(s)	63, 541, 877
AvaII	GGWCC	4 cut(s)	450, 656, 747, 755
BaeGI	GKGCMC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	835
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	288, 512, 610
BccI	CCATC	3 cut(s)	76, 238, 392
BciT130I	CCWGG	1 cut(s)	454
BclI	TGATCA	1 cut(s)	546
BfaI	CTAG	2 cut(s)	99, 695
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	4 cut(s)	103, 302, 501, 624
BlsI	GCNGC	4 cut(s)	104, 303, 502, 625
Bme1390I	CCNGG	1 cut(s)	454
Bme18I	GGWCC	4 cut(s)	450, 656, 747, 755
BmgT120I	GGNCC	5 cut(s)	450, 656, 713, 747, 755
BmiI	GGNNCC	4 cut(s)	136, 382, 459, 749
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	446, 453, 751
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 563, 665, 722, 815
Bse1I	ACTGG	2 cut(s)	501, 557
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	446, 453, 751
BseGI	GGATG	2 cut(s)	335, 572
BseLI	CCNNNNNNNGG	5 cut(s)	131, 563, 665, 722, 815
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	296, 871
BseNI	ACTGG	2 cut(s)	501, 557
BseRI	GAGGAG	2 cut(s)	324, 880
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	3 cut(s)	288, 512, 610
BseYI	CCCAGC	2 cut(s)	739, 878
BsgI	GTGCAG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	105, 715
BsiHKAI	GWGCWC	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	5 cut(s)	131, 563, 665, 722, 815
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	105, 715
Bsp1286I	GDGCHC	3 cut(s)	397, 808, 835
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
Bsp19I	CCATGG	1 cut(s)	446
BspACI	CCGC	6 cut(s)	90, 102, 204, 230, 239, 344
BspANI	GGCC	2 cut(s)	105, 715
BspCNI	CTCAG	2 cut(s)	297, 870
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	4 cut(s)	136, 382, 459, 749
BspPI	GGATC	3 cut(s)	116, 290, 736
BsrDI	GCAATG	1 cut(s)	681
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	501, 557
BssECI	CCNNGG	3 cut(s)	446, 453, 751
BssMI	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	155, 355, 418
BstAUI	TGTACA	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	228, 292
BstDEI	CTNAG	2 cut(s)	305, 857
BstDSI	CCRYGG	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	2 cut(s)	335, 572
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	6 cut(s)	124, 163, 285, 541, 549, 731
BstMBI	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 341, 879
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	808
BstSNI	TACGTA	1 cut(s)	14
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	288, 512, 610
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	105, 715
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	335, 572
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	228, 292
CaiI	CAGNNNCTG	1 cut(s)	716
CciI	TCATGA	1 cut(s)	543
Cfr13I	GGNCC	5 cut(s)	450, 656, 713, 747, 755
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	15, 31, 494, 560
CviAII	CATG	8 cut(s)	34, 167, 398, 447, 544, 641, 771, 870
CviQI	GTAC	4 cut(s)	15, 31, 494, 560
DdeI	CTNAG	2 cut(s)	305, 857
DpnI	GATC	6 cut(s)	123, 162, 284, 540, 548, 730
DpnII	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
DraI	TTTAAA	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	254
Eco105I	TACGTA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	835
Eco47I	GGWCC	4 cut(s)	450, 656, 747, 755
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO109I	RGGNCCY	2 cut(s)	713, 747
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	2 cut(s)	145, 337
EcoT38I	GRGCYC	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	8 cut(s)	37, 170, 401, 450, 547, 644, 774, 873
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	8 cut(s)	33, 166, 397, 446, 543, 640, 770, 869
FauI	CCCGC	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	4 cut(s)	103, 302, 501, 624
FokI	GGATG	2 cut(s)	322, 579
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	4 cut(s)	103, 302, 501, 624
FspBI	CTAG	2 cut(s)	99, 695
GluI	GCNGC	4 cut(s)	103, 302, 501, 624
GsaI	CCCAGC	2 cut(s)	743, 882
HaeIII	GGCC	2 cut(s)	105, 715
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	8 cut(s)	37, 170, 401, 450, 547, 644, 774, 873
HincII	GTYRAC	2 cut(s)	96, 403
HindII	GTYRAC	2 cut(s)	96, 403
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	2 cut(s)	855, 861
HpaI	GTTAAC	1 cut(s)	403
HphI	GGTGA	3 cut(s)	63, 541, 877
Hpy166II	GTNNAC	3 cut(s)	96, 403, 908
Hpy188I	TCNGA	2 cut(s)	755, 860
Hpy188III	TCNNGA	5 cut(s)	125, 172, 262, 544, 723
Hpy8I	GTNNAC	3 cut(s)	96, 403, 908
HpyAV	CCTTC	2 cut(s)	196, 589
HpyCH4III	ACNGT	3 cut(s)	155, 355, 418
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	8 cut(s)	4, 44, 143, 158, 335, 428, 827, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 341, 879
HpyF3I	CTNAG	2 cut(s)	305, 857
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	8 cut(s)	37, 170, 401, 450, 547, 644, 774, 873
Ksp22I	TGATCA	1 cut(s)	546
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
LmnI	GCTCC	2 cut(s)	386, 818
Lsp1109I	GCAGC	3 cut(s)	288, 512, 610
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	2 cut(s)	99, 695
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	6 cut(s)	123, 162, 284, 540, 548, 730
MboI	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
MboII	GAAGA	2 cut(s)	128, 181
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	3 cut(s)	397, 808, 835
MluCI	AATT	2 cut(s)	78, 211
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	2 cut(s)	229, 490
MnlI	CCTC	7 cut(s)	302, 471, 719, 761, 893, 898, 901
Mph1103I	ATGCAT	2 cut(s)	145, 337
MseI	TTAA	4 cut(s)	215, 350, 402, 851
MspA1I	CMGCKG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	236, 341, 879
NcoI	CCATGG	1 cut(s)	446
NdeII	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
NlaIII	CATG	8 cut(s)	37, 170, 401, 450, 547, 644, 774, 873
NlaIV	GGNNCC	4 cut(s)	136, 382, 459, 749
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	2 cut(s)	145, 337
NspI	RCATGY	1 cut(s)	37
PagI	TCATGA	1 cut(s)	543
PciI	ACATGT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	861
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	104, 303, 502, 625
PleI	GAGTC	1 cut(s)	849
PpsI	GAGTC	1 cut(s)	849
Ppu21I	YACGTR	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	747
PscI	ACATGT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	452
PspFI	CCCAGC	2 cut(s)	739, 878
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	4 cut(s)	136, 382, 459, 749
PspPI	GGNCC	5 cut(s)	450, 656, 713, 747, 755
PspPPI	RGGWCCY	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	4 cut(s)	16, 32, 495, 561
RsaNI	GTAC	4 cut(s)	15, 31, 494, 560
SaqAI	TTAA	4 cut(s)	215, 350, 402, 851
SatI	GCNGC	4 cut(s)	103, 302, 501, 624
Sau3AI	GATC	6 cut(s)	121, 160, 282, 538, 546, 728
Sau96I	GGNCC	5 cut(s)	450, 656, 713, 747, 755
SchI	GAGTC	1 cut(s)	849
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	3 cut(s)	397, 808, 835
SfaNI	GCATC	1 cut(s)	344
SinI	GGWCC	4 cut(s)	450, 656, 747, 755
SmiI	ATTTAAAT	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	14
Sse9I	AATT	2 cut(s)	78, 211
SsiI	CCGC	6 cut(s)	90, 102, 204, 230, 239, 344
SspMI	CTAG	2 cut(s)	99, 695
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	446
SwaI	ATTTAAAT	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	155, 355, 418
TaiI	ACGT	1 cut(s)	16
TasI	AATT	2 cut(s)	78, 211
TatI	WGTACW	3 cut(s)	30, 493, 559
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	861
Tru1I	TTAA	4 cut(s)	215, 350, 402, 851
Tru9I	TTAA	4 cut(s)	215, 350, 402, 851
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	301, 500, 623
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	224, 595, 759
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	4 cut(s)	450, 656, 747, 755
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	78, 211
XceI	RCATGY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	907
XspI	CTAG	2 cut(s)	99, 695
Zsp2I	ATGCAT	2 cut(s)	145, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.