Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015253

Physical Location & Seq

Genomic Coordinates Forward (+)

1846442 .. 1848259

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTCACATCGCTGTTGAAAGGAATCGAAGAAGGCAAATGAACGAGCATCTTAAATCCCTTCGTTCTTTGACTCCTTGTTTCTACATCAAAAGGGGAGATCAAGCTTCGATCATCGGAGGAGTGATAGAGTTCATCAAAGAGTTGCAGCAATTGGTTCAAGTTCTTGAGTCCAAGAAACGTCGAAAGACCCTAAACCGACCATCTTTCCCTTATGATCACCAGACAATCGAGCCATCCAGTTTAGGAGCCGCCACTACCCGAGTACCGTTTAGTCGAATCGAAAATGTGATGACCACAAGTACTTTCAAGGAAGTAGGAGCATGCTGTAACTCCCCTCATGCTAACGTAGAAGCAAAGATTTCAGGTTCTAATGTTGTATTGAGAGTTGTCTCTAGGCGAATCGTGGGGCAGCTCGTAAAGATCATCTCTGTCTTAGAGAAGCTATCTTTTCAAGTTCTTCACCTCAATATTAGTAGCATGGAGGAGACTGTCTTATACTTTTTCGTTGTTAAGATAGGATTGGAGTGTCACTTAAGCTTGGAGGAGCTAACTCTTGAAGTTCAGAAAAGCTTTGTGTCTGATGAAGTGATCGTCTCTACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

202

Amino Acids

22.84

Weight (kDa)

9.27

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	2 - 50	3.3e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06120
fragaria_vesca	FvH4_4g14530
malus_domestica	MD13G1184300.v1.1 MD16G1184500.v1.1
prunus_persica	Prupe.1G151800_v2.0.a1
pyrus_communis	pycom13g15880 pycom16g15500
rosa_chinensis	RchiOBHm_Chr4g0418301
rosa_laevigata	RLG00000007879
rosa_roxburghii	Rroxscaffold_5G00361470
rosa_rugosa	Rorug04G0151900
rosa_samantha	Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000
rosa_wichuraiana	Rw4G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	267, 304
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	5 cut(s)	20, 161, 310, 455, 560
AluBI	AGCT	6 cut(s)	107, 415, 445, 540, 550, 573
AluI	AGCT	6 cut(s)	107, 415, 445, 540, 550, 573
Alw26I	GTCTC	4 cut(s)	9, 397, 482, 601
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	148, 412
AsuHPI	GGTGA	2 cut(s)	212, 455
AvaI	CYCGRG	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BbvI	GCAGC	2 cut(s)	160, 424
BccI	CCATC	2 cut(s)	211, 244
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	4 cut(s)	9, 397, 482, 601
BfaI	CTAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	535
BisI	GCNGC	3 cut(s)	149, 252, 413
BlsI	GCNGC	3 cut(s)	150, 253, 414
BmcAI	AGTACT	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	3 cut(s)	135, 500, 560
BseXI	GCAGC	2 cut(s)	160, 424
BsiHKCI	CYCGRG	1 cut(s)	261
BsmAI	GTCTC	4 cut(s)	9, 397, 482, 601
BsmBI	CGTCTC	1 cut(s)	601
BsoBI	CYCGRG	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	100, 111, 217, 423, 591
BspACI	CCGC	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	100, 111, 217, 423, 591
Bst4CI	ACNGT	2 cut(s)	270, 493
BstAFI	CTTAAG	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	5 cut(s)	103, 114, 220, 426, 594
BstMAI	GTCTC	4 cut(s)	9, 397, 482, 601
BstMBI	GATC	5 cut(s)	100, 111, 217, 423, 591
BstNSI	RCATGY	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	160, 424
BtsCI	GGATG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	266, 303
CviAII	CATG	3 cut(s)	324, 341, 481
CviJI	RGCY	8 cut(s)	107, 235, 251, 415, 445, 540, 550, 573
CviKI_1	RGCY	8 cut(s)	107, 235, 251, 415, 445, 540, 550, 573
CviQI	GTAC	2 cut(s)	266, 303
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	5 cut(s)	102, 113, 219, 425, 593
DpnII	GATC	5 cut(s)	100, 111, 217, 423, 591
Eco88I	CYCGRG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	601
FaeI	CATG	3 cut(s)	327, 344, 484
FaiI	YATR	5 cut(s)	216, 325, 342, 482, 499
FatI	CATG	3 cut(s)	323, 340, 480
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	149, 252, 413
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	149, 252, 413
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	3 cut(s)	149, 252, 413
Hin1II	CATG	3 cut(s)	327, 344, 484
HindIII	AAGCTT	3 cut(s)	105, 538, 571
HinfI	GANTC	5 cut(s)	25, 73, 170, 279, 402
HphI	GGTGA	2 cut(s)	212, 455
Hpy188I	TCNGA	3 cut(s)	119, 567, 583
Hpy188III	TCNNGA	2 cut(s)	167, 557
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	27, 71
HpyCH4III	ACNGT	2 cut(s)	270, 493
HpyCH4IV	ACGT	2 cut(s)	181, 348
HpyCH4V	TGCA	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	436
HpySE526I	ACGT	2 cut(s)	181, 348
Hsp92II	CATG	3 cut(s)	327, 344, 484
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	100, 111, 217, 423, 591
LmnI	GCTCC	3 cut(s)	248, 320, 547
LpnPI	CCDG	3 cut(s)	236, 253, 351
Lsp1109I	GCAGC	2 cut(s)	160, 424
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	181, 348
MaeIII	GTNAC	2 cut(s)	329, 530
MalI	GATC	5 cut(s)	102, 113, 219, 425, 593
MboI	GATC	5 cut(s)	100, 111, 217, 423, 591
MboII	GAAGA	2 cut(s)	42, 452
MfeI	CAATTG	1 cut(s)	152
MluCI	AATT	2 cut(s)	152, 604
MlyI	GAGTC	2 cut(s)	67, 179
MnlI	CCTC	5 cut(s)	113, 348, 476, 478, 538
MseI	TTAA	4 cut(s)	54, 513, 536, 607
MspCI	CTTAAG	1 cut(s)	535
MunI	CAATTG	1 cut(s)	152
NdeII	GATC	5 cut(s)	100, 111, 217, 423, 591
NlaIII	CATG	3 cut(s)	327, 344, 484
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	530
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	25, 279, 402
PkrI	GCNGC	3 cut(s)	150, 253, 414
PleI	GAGTC	2 cut(s)	67, 178
PpsI	GAGTC	2 cut(s)	67, 178
PspN4I	GGNNCC	1 cut(s)	250
RsaI	GTAC	2 cut(s)	267, 304
RsaNI	GTAC	2 cut(s)	266, 303
SaqAI	TTAA	4 cut(s)	54, 513, 536, 607
SatI	GCNGC	3 cut(s)	149, 252, 413
Sau3AI	GATC	5 cut(s)	100, 111, 217, 423, 591
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	2 cut(s)	67, 179
SfaNI	GCATC	1 cut(s)	58
SmlI	CTYRAG	2 cut(s)	167, 535
SmoI	CTYRAG	2 cut(s)	167, 535
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	2 cut(s)	152, 604
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	270, 493
TaiI	ACGT	2 cut(s)	184, 351
TaqI	TCGA	6 cut(s)	28, 110, 184, 231, 277, 282
TasI	AATT	2 cut(s)	152, 604
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	25, 279, 402
Tru1I	TTAA	4 cut(s)	54, 513, 536, 607
Tru9I	TTAA	4 cut(s)	54, 513, 536, 607
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	2 cut(s)	148, 412
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	56, 124, 600
Vha464I	CTTAAG	1 cut(s)	535
XceI	RCATGY	1 cut(s)	327
XspI	CTAG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.