Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015253

Physical Location & Seq

Genomic Coordinates Reverse (-)

15892433 .. 15893263

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1184500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAAGATAATATCTCGGCGAATACCTGGCCAAATTGCCAAGATCATTGGTATGCTCGAGAAGCTTTCATTTGATGTCCTTCATCTCAACATCAGCAGCATGGAAGACACTGTTTTATACTCTTTTGTAATCAAGATAGGACTGGAGTGTCAGTTGAGTGTAGAAGAACTAGTACTTGAAGTTCAACAAAGTTTGCGCTCAGATACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

71

Amino Acids

7.93

Weight (kDa)

5.19

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06120
fragaria_vesca	FvH4_4g14530
malus_domestica	MD13G1184300.v1.1 MD16G1184500.v1.1
prunus_persica	Prupe.1G151800_v2.0.a1
pyrus_communis	pycom13g15880 pycom16g15500
rosa_chinensis	RchiOBHm_Chr4g0418301
rosa_laevigata	RLG00000007879
rosa_roxburghii	Rroxscaffold_5G00361470
rosa_rugosa	Rorug04G0151900
rosa_samantha	Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000
rosa_wichuraiana	Rw4G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	28
AfaI	GTAC	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	179, 185
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	27
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	108
BshFI	GGCC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	56
BsnI	GGCC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	2 cut(s)	30, 64
CviKI_1	RGCY	2 cut(s)	30, 64
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DrdI	GACNNNNNNGTC	1 cut(s)	147
DseDI	GACNNNNNNGTC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	53, 101, 118
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	170
FspEI	CC	9 cut(s)	12, 33, 39, 44, 52, 86, 92, 123, 128
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	58, 133
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	12, 39, 128
Lsp1109I	GCAGC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	170
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	3 cut(s)	16, 116, 176
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	2 cut(s)	33, 208
MluNI	TGGCCA	1 cut(s)	30
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	211
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PsrI	GAACNNNNNNTAC	2 cut(s)	165, 197
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	211
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	2 cut(s)	28, 66
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	33, 208
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	33, 208
TatI	WGTACW	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	211
Tru9I	TTAA	1 cut(s)	211
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	3 cut(s)	17, 57, 71
TspRI	CASTG	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	56
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.