Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015253

Physical Location & Seq

Genomic Coordinates Reverse (-)

15609412 .. 15610993

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1184300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCGACCTATAGCATTTAATATCAACCCAACAGGTGTTTTGTATGTGTGGGTTTCTTTCAATGTATATCATATAAATAGCATAGTTTTTAAGTTGATACATATGTGGAAGAAAAAGAAAGTGGTTGAAAGAAACACTGCACAGAAGATAAGCTTAAAGATCAAAACCATGTCTCACATAGCTGTGGAGAGGAACAGGAGAAAACAGATGAATGAGCATCTCAAAGTCTTACGCTCTTTGACCCCTTGTTTCTACATCAAAAGGGGAGACCAAGCATCAATCATAGGAGGTGTGATAGAATTCATCAAGGAATTGCATCAAGTTTTACAGACTCTGGAATCTAACAAAAGAAGAAAAAGCATAAGCCCTAGCCCTAATCCAAGCCCAAGACCAGTAGCCCTACTGCCTCAGAAATATCCAACGGCTCCGCAACTTCATCAAAACCCTAATTTTAATTTTAATTTGGGGACTGAAAATCATCACCATGTGATCAATAAGGAACTAGCTATAGGAGCAAGTTGCAACTCTCCGGTGGCTGACGTCGAAGCAAAGATCTCGGGATCTAACGTGGTGATGAAGATAATATCTCAGCGAATACCTGGCCAAATTGCCAAGATCATTGGTGTTCTCGAGAGGCTTTCATTTGATGTCCTTCATCTCAACATCAGCAGCATGGAAGACACTGTTTTATACTCTTTTGTAATCAAGATAGGGCTGGAGTGTCAGTTGAGCGTAGAAGAACTAGTACTTGAAGTTCAACAAAGTGTGCGCTCAGACGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

262

Amino Acids

29.56

Weight (kDa)

9.78

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	56 - 106	2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0015253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06120
fragaria_vesca	FvH4_4g14530
malus_domestica	MD13G1184300.v1.1 MD16G1184500.v1.1
prunus_persica	Prupe.1G151800_v2.0.a1
pyrus_communis	pycom13g15880 pycom16g15500
rosa_chinensis	RchiOBHm_Chr4g0418301
rosa_laevigata	RLG00000007879
rosa_roxburghii	Rroxscaffold_5G00361470
rosa_rugosa	Rorug04G0151900
rosa_samantha	Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000
rosa_wichuraiana	Rw4G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	543
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	540
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	61, 128, 752, 758
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	153, 182, 506
AluI	AGCT	3 cut(s)	153, 182, 506
Alw26I	GTCTC	2 cut(s)	177, 261
AlwI	GGATC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	2 cut(s)	556, 629
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	669
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	771
AsuHPI	GGTGA	2 cut(s)	473, 583
AvaI	CYCGRG	2 cut(s)	556, 629
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BalI	TGGCCA	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BbsI	GAAGAC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	681
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	177, 261
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	3 cut(s)	369, 503, 743
BfmI	CTRYAG	2 cut(s)	9, 507
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
BmcAI	AGTACT	1 cut(s)	747
Bme1390I	CCNGG	1 cut(s)	600
BmeT110I	CYCGRG	2 cut(s)	556, 629
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	226, 284, 325
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	422, 602, 786
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	681
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	603
BsiHKCI	CYCGRG	2 cut(s)	556, 629
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	177, 261
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	261
BsoBI	CYCGRG	2 cut(s)	556, 629
Bsp143I	GATC	5 cut(s)	159, 489, 552, 560, 615
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	3 cut(s)	421, 601, 785
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	392
BssMI	GATC	5 cut(s)	159, 489, 552, 560, 615
BssNI	GRCGYC	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	685
BstACI	GRCGYC	1 cut(s)	540
BstDEI	CTNAG	3 cut(s)	408, 588, 772
BstHHI	GCGC	1 cut(s)	771
BstKTI	GATC	5 cut(s)	162, 492, 555, 563, 618
BstMAI	GTCTC	2 cut(s)	177, 261
BstMBI	GATC	5 cut(s)	159, 489, 552, 560, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	2 cut(s)	9, 507
BstV1I	GCAGC	1 cut(s)	681
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	2 cut(s)	552, 560
BstYI	RGATCY	2 cut(s)	552, 560
BsuRI	GGCC	1 cut(s)	603
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 681
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	771
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	3 cut(s)	169, 485, 673
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	3 cut(s)	408, 588, 772
DpnI	GATC	5 cut(s)	161, 491, 554, 562, 617
DpnII	GATC	5 cut(s)	159, 489, 552, 560, 615
DraIII	CACNNNGTG	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	556, 629
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	598
FaeI	CATG	3 cut(s)	172, 488, 676
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	3 cut(s)	168, 484, 672
FauNDI	CATATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	670
FspBI	CTAG	3 cut(s)	369, 503, 743
GlaI	GCGC	1 cut(s)	770
GluI	GCNGC	1 cut(s)	670
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	1 cut(s)	771
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	3 cut(s)	172, 488, 676
Hin6I	GCGC	1 cut(s)	769
HinP1I	GCGC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	331, 338
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	2 cut(s)	473, 583
Hpy188I	TCNGA	2 cut(s)	411, 775
Hpy188III	TCNNGA	5 cut(s)	335, 558, 629, 631, 706
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	2 cut(s)	540, 567
HpyCH4V	TGCA	3 cut(s)	140, 316, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	3 cut(s)	408, 588, 772
HpySE526I	ACGT	2 cut(s)	540, 567
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	172, 488, 676
HspAI	GCGC	1 cut(s)	769
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	5 cut(s)	159, 489, 552, 560, 615
LmnI	GCTCC	2 cut(s)	430, 512
LpnPI	CCDG	8 cut(s)	18, 181, 320, 405, 543, 585, 612, 701
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	3 cut(s)	226, 284, 325
MaeI	CTAG	3 cut(s)	369, 503, 743
MaeII	ACGT	2 cut(s)	540, 567
MalI	GATC	5 cut(s)	161, 491, 554, 562, 617
MboI	GATC	5 cut(s)	159, 489, 552, 560, 615
MboII	GAAGA	6 cut(s)	121, 157, 363, 589, 689, 749
MflI	RGATCY	2 cut(s)	552, 560
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	7 cut(s)	299, 311, 448, 454, 460, 606, 781
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	4 cut(s)	183, 281, 417, 627
Mox20I	TGGCCA	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	6 cut(s)	18, 90, 155, 453, 459, 784
MslI	CAYNNNNRTG	2 cut(s)	182, 483
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	5 cut(s)	159, 489, 552, 560, 615
NlaIII	CATG	3 cut(s)	172, 488, 676
NlaIV	GGNNCC	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	671
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	426
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	552, 560
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
RseI	CAYNNNNRTG	2 cut(s)	182, 483
SaqAI	TTAA	6 cut(s)	18, 90, 155, 453, 459, 784
SatI	GCNGC	1 cut(s)	670
Sau3AI	GATC	5 cut(s)	159, 489, 552, 560, 615
ScaI	AGTACT	1 cut(s)	747
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	600
SetI	ASST	9 cut(s)	10, 37, 155, 184, 292, 508, 543, 570, 601
SfaNI	GCATC	3 cut(s)	226, 284, 325
SfcI	CTRYAG	2 cut(s)	9, 507
Sfr274I	CTCGAG	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	182, 483
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	7 cut(s)	299, 311, 448, 454, 460, 606, 781
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	3 cut(s)	369, 503, 743
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	2 cut(s)	543, 570
TaqI	TCGA	2 cut(s)	543, 630
TasI	AATT	7 cut(s)	299, 311, 448, 454, 460, 606, 781
TatI	WGTACW	1 cut(s)	745
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	6 cut(s)	18, 90, 155, 453, 459, 784
Tru9I	TTAA	6 cut(s)	18, 90, 155, 453, 459, 784
TscAI	CASTG	2 cut(s)	142, 688
TseI	GCWGC	1 cut(s)	669
TspDTI	ATGAA	6 cut(s)	224, 292, 425, 590, 630, 644
TspRI	CASTG	2 cut(s)	142, 688
XapI	RAATTY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	629
XspI	CTAG	3 cut(s)	369, 503, 743
ZraI	GACGTC	1 cut(s)	541
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.