Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015253

Physical Location & Seq

Genomic Coordinates Reverse (-)

11665157 .. 11665836

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCTCACATAGCTGTGGAGAGAAACAGGAGAAAACAGATGAATGAGCATCTCAAAGTCTTACGCTCTTTGACCCCTTGTTTCTACATCAAAAGGGGAGACCAAGCATCAATCATAGGAGGTGTGATAGAATTCATCAAGGAATTGCATCAAGTTTTACAGACTCTGGAATCTAACAAAAGAAGAAAAAGCCTAAGCCCTAGCCCTAATCCAAGCCCAAGGCCAGTAGCCCTACTGCCTCAGAAATATCCAACGGCTCCGCAACTTCATCAAAACCCTAATTTTAATTTTAATTTGGGGACTGAAAATCATCACCATGTGATCGATCAGGAACTAGCTATAGGAGCAAGTTGCAACTCTCCAGTGGCTGACGTCGAAGCAAAGATCTCGGGATCCAACGTAGTGATGAAGATAATATCTCAGCGAATACCTGGCCAAATTGCCAAGATCATTGGTGTTCTCGAGAGGCTTTCATTTGATGTCCTTCATCTCAACATCAGCAGCATGGAAGACACTGTTTTATACTCTTTTGTAATCAAGGTACGTACGTTTTATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

187

Amino Acids

20.99

Weight (kDa)

9.61

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	2 - 50	2.4e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06120
fragaria_vesca	FvH4_4g14530
malus_domestica	MD13G1184300.v1.1 MD16G1184500.v1.1
prunus_persica	Prupe.1G151800_v2.0.a1
pyrus_communis	pycom13g15880 pycom16g15500
rosa_chinensis	RchiOBHm_Chr4g0418301
rosa_laevigata	RLG00000007879
rosa_roxburghii	Rroxscaffold_5G00361470
rosa_rugosa	Rorug04G0151900
rosa_samantha	Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000
rosa_wichuraiana	Rw4G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	375
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	387, 400
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	543, 547
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	14, 338
AluI	AGCT	2 cut(s)	14, 338
Alw26I	GTCTC	2 cut(s)	9, 93
AlwI	GGATC	2 cut(s)	387, 400
AlwNI	CAGNNNCTG	2 cut(s)	166, 368
Ama87I	CYCGRG	2 cut(s)	388, 461
AoxI	GGCC	2 cut(s)	221, 433
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	2 cut(s)	388, 461
BaeI	ACNNNNGTAYC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	9, 93
BfaI	CTAG	2 cut(s)	201, 335
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	432
BmeT110I	CYCGRG	2 cut(s)	388, 461
BmiI	GGNNCC	2 cut(s)	258, 394
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	58, 116, 157
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	224, 362
BseBI	CCWGG	1 cut(s)	432
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	254, 434
BseNI	ACTGG	2 cut(s)	224, 362
BseXI	GCAGC	1 cut(s)	513
BshFI	GGCC	2 cut(s)	223, 435
BshVI	ATCGAT	1 cut(s)	324
BsiHKCI	CYCGRG	2 cut(s)	388, 461
BsiWI	CGTACG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	9, 93
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	223, 435
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	2 cut(s)	388, 461
Bsp143I	GATC	5 cut(s)	321, 325, 384, 392, 447
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	2 cut(s)	223, 435
BspCNI	CTCAG	2 cut(s)	253, 433
BspDI	ATCGAT	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	258, 394
BspPI	GGATC	2 cut(s)	387, 400
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	224, 362
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	5 cut(s)	321, 325, 384, 392, 447
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	517
BstACI	GRCGYC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	194, 240, 420
BstKTI	GATC	5 cut(s)	324, 328, 387, 395, 450
BstMAI	GTCTC	2 cut(s)	9, 93
BstMBI	GATC	5 cut(s)	321, 325, 384, 392, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	339
BstSNI	TACGTA	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	513
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	384, 392
BstYI	RGATCY	2 cut(s)	384, 392
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	223, 435
BsuTUI	ATCGAT	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	369, 513
CaiI	CAGNNNCTG	2 cut(s)	166, 368
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	542, 546
CviAII	CATG	2 cut(s)	317, 505
CviQI	GTAC	2 cut(s)	542, 546
DdeI	CTNAG	3 cut(s)	194, 240, 420
DpnI	GATC	5 cut(s)	323, 327, 386, 394, 449
DpnII	GATC	5 cut(s)	321, 325, 384, 392, 447
DraIII	CACNNNGTG	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	433
Eco105I	TACGTA	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	93
Eco88I	CYCGRG	2 cut(s)	388, 461
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	320, 508
FaiI	YATR	6 cut(s)	11, 116, 318, 341, 506, 523
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	316, 504
Fnu4HI	GCNGC	1 cut(s)	502
Fsp4HI	GCNGC	1 cut(s)	502
FspBI	CTAG	2 cut(s)	201, 335
GluI	GCNGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	223, 435
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	320, 508
HinfI	GANTC	2 cut(s)	163, 170
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	5 cut(s)	167, 329, 390, 461, 463
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	4 cut(s)	372, 399, 544, 548
HpyCH4V	TGCA	2 cut(s)	148, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	194, 240, 420
HpySE526I	ACGT	4 cut(s)	372, 399, 544, 548
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	320, 508
Kzo9I	GATC	5 cut(s)	321, 325, 384, 392, 447
LmnI	GCTCC	2 cut(s)	262, 344
LpnPI	CCDG	7 cut(s)	13, 152, 237, 314, 375, 417, 444
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	3 cut(s)	58, 116, 157
MaeI	CTAG	2 cut(s)	201, 335
MaeII	ACGT	4 cut(s)	372, 399, 544, 548
MalI	GATC	5 cut(s)	323, 327, 386, 394, 449
MboI	GATC	5 cut(s)	321, 325, 384, 392, 447
MboII	GAAGA	3 cut(s)	195, 421, 521
MflI	RGATCY	2 cut(s)	384, 392
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	6 cut(s)	131, 143, 280, 286, 292, 438
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	275, 420
MnlI	CCTC	3 cut(s)	113, 249, 459
Mox20I	TGGCCA	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	3 cut(s)	285, 291, 559
MslI	CAYNNNNRTG	2 cut(s)	14, 315
Msp20I	TGGCCA	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	5 cut(s)	321, 325, 384, 392, 447
NlaIII	CATG	2 cut(s)	320, 508
NlaIV	GGNNCC	2 cut(s)	258, 394
PaeR7I	CTCGAG	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	170
Pfl23II	CGTACG	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	503
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspLI	CGTACG	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	258, 394
PstNI	CAGNNNCTG	2 cut(s)	166, 368
PsuI	RGATCY	2 cut(s)	384, 392
RsaI	GTAC	2 cut(s)	543, 547
RsaNI	GTAC	2 cut(s)	542, 546
RseI	CAYNNNNRTG	2 cut(s)	14, 315
SaqAI	TTAA	3 cut(s)	285, 291, 559
SatI	GCNGC	1 cut(s)	502
Sau3AI	GATC	5 cut(s)	321, 325, 384, 392, 447
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	9 cut(s)	16, 124, 340, 375, 402, 433, 543, 547, 551
SfaNI	GCATC	3 cut(s)	58, 116, 157
SfcI	CTRYAG	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	14, 315
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SnaBI	TACGTA	1 cut(s)	545
Sse9I	AATT	6 cut(s)	131, 143, 280, 286, 292, 438
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	201, 335
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	4 cut(s)	375, 402, 547, 551
TaqI	TCGA	3 cut(s)	324, 375, 462
TasI	AATT	6 cut(s)	131, 143, 280, 286, 292, 438
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	3 cut(s)	285, 291, 559
Tru9I	TTAA	3 cut(s)	285, 291, 559
TscAI	CASTG	2 cut(s)	369, 520
TseI	GCWGC	1 cut(s)	501
TspDTI	ATGAA	6 cut(s)	56, 124, 257, 422, 462, 476
TspRI	CASTG	2 cut(s)	369, 520
XapI	RAATTY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	461
XspI	CTAG	2 cut(s)	201, 335
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.