Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015253

Physical Location & Seq

Genomic Coordinates Reverse (-)

11464434 .. 11465125

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCTCACATAGCTGTGGAGAGAAACAGGAGGAAACAGATGAATGAGCATCTCAAAGTCTTACGCTCTTTGACCCCTTGTTTCTACATCAAAAGGGGAGACCAAGCATCAATCATCGGAGGTGTGATTGAATTCATCAAGGAATTGCATCGAGTTTTACAGAGTCTGGAATCTAACAAAAGAAGAAAAAGCATAAGCCCTAGCCCTAATCCAAGCCCAAGACCAGTAGTCGCACTGCCTCAGAAATATCCAACCGCTACACAACCTCATCAAAACCCTGACTTTAATTTTAATTTGGGGACTGAAAACCGTCACCATATGATCAATAAGGAACTAGCTATTGGAGCAAGTTGCAACTCTCCGGTGGCTGACGTCGAAGCAAAGATCTCGGGATCCAACGTGGTGGTGAAGATAATATCTTGGCGAATACCTGGCCAAATTGCCAAGATCATTGGTATGTTCGAGAGGCTTTCATTTGATGTTCTTCACCTCAACATCAGCAGCATGGAAGACACTGTTTTATACTCTTTTGTAATCAAGGTACGTACGTTGTATCATGAAACCTCTTTAATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

193

Amino Acids

21.77

Weight (kDa)

9.8

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06120
fragaria_vesca	FvH4_4g14530
malus_domestica	MD13G1184300.v1.1 MD16G1184500.v1.1
prunus_persica	Prupe.1G151800_v2.0.a1
pyrus_communis	pycom13g15880 pycom16g15500
rosa_chinensis	RchiOBHm_Chr4g0418301
rosa_laevigata	RLG00000007879
rosa_roxburghii	Rroxscaffold_5G00361470
rosa_rugosa	Rorug04G0151900
rosa_samantha	Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000
rosa_wichuraiana	Rw4G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	375
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	387, 400
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	2 cut(s)	543, 547
AgsI	TTSAA	1 cut(s)	131
AhdI	GACNNNNNGTC	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	2 cut(s)	14, 338
AluI	AGCT	2 cut(s)	14, 338
Alw26I	GTCTC	2 cut(s)	9, 93
AlwI	GGATC	2 cut(s)	387, 400
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	305, 418, 479
AvaI	CYCGRG	1 cut(s)	388
BaeI	ACNNNNGTAYC	2 cut(s)	533, 566
BalI	TGGCCA	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	513
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	9, 93
BfaI	CTAG	2 cut(s)	201, 335
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	432
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	58, 116, 157
BpiI	GAAGAC	1 cut(s)	516
BsaAI	YACGTR	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	513
BshFI	GGCC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	362
BsiWI	CGTACG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	9, 93
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	321, 384, 392, 447
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	387, 400
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	4 cut(s)	321, 384, 392, 447
BssNI	GRCGYC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	311, 517
BstACI	GRCGYC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	4 cut(s)	324, 387, 395, 450
BstMAI	GTCTC	2 cut(s)	9, 93
BstMBI	GATC	4 cut(s)	321, 384, 392, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSNI	TACGTA	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	513
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	384, 392
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	384, 392
BsuRI	GGCC	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 513
CaiI	CAGNNNCTG	1 cut(s)	166
CciI	TCATGA	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	542, 546
CviAII	CATG	2 cut(s)	505, 557
CviJI	RGCY	8 cut(s)	14, 198, 204, 216, 338, 368, 435, 469
CviKI_1	RGCY	8 cut(s)	14, 198, 204, 216, 338, 368, 435, 469
CviQI	GTAC	2 cut(s)	542, 546
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	4 cut(s)	323, 386, 394, 449
DpnII	GATC	4 cut(s)	321, 384, 392, 447
DriI	GACNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	433
Eam1105I	GACNNNNNGTC	1 cut(s)	227
Eco105I	TACGTA	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	508, 560
FaiI	YATR	9 cut(s)	11, 194, 318, 320, 458, 506, 523, 558, 575
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	504, 556
FauNDI	CATATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	502
Fsp4HI	GCNGC	1 cut(s)	502
FspBI	CTAG	2 cut(s)	201, 335
GluI	GCNGC	1 cut(s)	502
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	508, 560
HinfI	GANTC	2 cut(s)	163, 170
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	305, 418, 479
Hpy188I	TCNGA	2 cut(s)	119, 243
Hpy188III	TCNNGA	4 cut(s)	167, 390, 463, 557
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	311, 517
HpyCH4IV	ACGT	4 cut(s)	372, 399, 544, 548
HpyCH4V	TGCA	2 cut(s)	148, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	4 cut(s)	372, 399, 544, 548
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	508, 560
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	321, 384, 392, 447
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	7 cut(s)	13, 152, 237, 291, 375, 417, 444
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	3 cut(s)	58, 116, 157
MaeI	CTAG	2 cut(s)	201, 335
MaeII	ACGT	4 cut(s)	372, 399, 544, 548
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	4 cut(s)	323, 386, 394, 449
MboI	GATC	4 cut(s)	321, 384, 392, 447
MboII	GAAGA	4 cut(s)	195, 421, 476, 521
MflI	RGATCY	2 cut(s)	384, 392
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	6 cut(s)	131, 143, 286, 292, 438, 570
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	275, 420
MnlI	CCTC	7 cut(s)	24, 113, 249, 276, 459, 500, 574
Mox20I	TGGCCA	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	3 cut(s)	285, 291, 569
MslI	CAYNNNNRTG	2 cut(s)	14, 455
Msp20I	TGGCCA	1 cut(s)	435
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	4 cut(s)	321, 384, 392, 447
NlaIII	CATG	2 cut(s)	508, 560
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	170
Pfl23II	CGTACG	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	503
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspLI	CGTACG	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	384, 392
RsaI	GTAC	2 cut(s)	543, 547
RsaNI	GTAC	2 cut(s)	542, 546
RseI	CAYNNNNRTG	2 cut(s)	14, 455
SaqAI	TTAA	3 cut(s)	285, 291, 569
SatI	GCNGC	1 cut(s)	502
Sau3AI	GATC	4 cut(s)	321, 384, 392, 447
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	58, 116, 157
SmiMI	CAYNNNNRTG	2 cut(s)	14, 455
SnaBI	TACGTA	1 cut(s)	545
Sse9I	AATT	6 cut(s)	131, 143, 286, 292, 438, 570
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	2 cut(s)	201, 335
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	311, 517
TaiI	ACGT	4 cut(s)	375, 402, 547, 551
TaqI	TCGA	3 cut(s)	151, 375, 462
TasI	AATT	6 cut(s)	131, 143, 286, 292, 438, 570
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	3 cut(s)	285, 291, 569
Tru9I	TTAA	3 cut(s)	285, 291, 569
TscAI	CASTG	2 cut(s)	240, 520
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	4 cut(s)	56, 124, 462, 573
TspRI	CASTG	2 cut(s)	240, 520
XapI	RAATTY	1 cut(s)	131
XspI	CTAG	2 cut(s)	201, 335
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.