Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015253

Physical Location & Seq

Genomic Coordinates Reverse (-)

18212042 .. 18213757

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTCACATAGCTGTGGAGAGAAACAGAAGGAAACAGATGAACGAACACCTCAAAGTTCTACGCACTTTAACCCCATGTTTCTACATCAAAAGGGGAGACCAGGCATCAATCATAGGAGGTGTGATAGAGTTCATCAAGGAGTTGCATCAAGTATTGCAGTCTTTGGAATCTAATAAACGCAGGAAGAAGCGCCTAAGCCCTAGCCCTAATCCAAGCCCGAGGCAGCCACTGCTACTATTGCCACCTACTCCGCCGCCCCAGCTTGATCAAAACCCTAAATTCAATTTTGGGTTAATCGATCAGAATCATGACCGTGCGGTCAAAGAACTAGGAGCATGCTGCAATTCTCCGGTGGCAGATGTCGAAGCGAAAATCTCAGGGTCCAACGTGGTGTTGAAGATAATATCCAGGCGGATTCCAGGTCAAGTTGTGAAGATAATCAGTGTGCTGGAGAGGTCTTCATTTGAGGTCCTCCATCTCAACATCAGTAGCATGGAAGACACGGTCCTGTACTCTTTTGTGATCAAGATAGGACTGGAGTGTCAGCTGAGCGTAGAGGAATTGGTTCTTGAAGTTCAACAGAGCTTGCGGTCGGACACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

9.27

Isoelectric Point (pI)

68.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	2 - 50	2.4e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06120
fragaria_vesca	FvH4_4g14530
malus_domestica	MD13G1184300.v1.1 MD16G1184500.v1.1
prunus_persica	Prupe.1G151800_v2.0.a1
pyrus_communis	pycom13g15880 pycom16g15500
rosa_chinensis	RchiOBHm_Chr4g0418301
rosa_laevigata	RLG00000007879
rosa_roxburghii	Rroxscaffold_5G00361470
rosa_rugosa	Rorug04G0151900
rosa_samantha	Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000
rosa_wichuraiana	Rw4G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	320, 543
AciI	CCGC	5 cut(s)	254, 257, 320, 415, 592
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	1 cut(s)	515
AgsI	TTSAA	4 cut(s)	286, 400, 575, 581
AjnI	CCWGG	3 cut(s)	102, 410, 421
AluBI	AGCT	4 cut(s)	14, 265, 550, 588
AluI	AGCT	4 cut(s)	14, 265, 550, 588
Alw26I	GTCTC	2 cut(s)	9, 93
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	226, 342
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	384, 472, 508
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	384, 472, 508
BbsI	GAAGAC	2 cut(s)	453, 507
BbvI	GCAGC	2 cut(s)	238, 329
BccI	CCATC	1 cut(s)	486
BciT130I	CCWGG	3 cut(s)	104, 412, 423
BclI	TGATCA	2 cut(s)	268, 525
BcoDI	GTCTC	2 cut(s)	9, 93
BfaI	CTAG	2 cut(s)	204, 332
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	3 cut(s)	227, 257, 343
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	3 cut(s)	228, 258, 344
Bme1390I	CCNGG	3 cut(s)	104, 412, 423
Bme18I	GGWCC	3 cut(s)	384, 472, 508
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	384, 472, 508
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	3 cut(s)	104, 412, 423
BmsI	GCATC	2 cut(s)	116, 157
BpiI	GAAGAC	2 cut(s)	453, 507
BpmI	CTGGAG	2 cut(s)	473, 560
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	3 cut(s)	104, 412, 423
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	393, 542
BseNI	ACTGG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	238, 329
BseYI	CCCAGC	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	596
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	9, 93
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	268, 301, 525
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	5 cut(s)	254, 257, 320, 415, 592
BspCNI	CTCAG	2 cut(s)	392, 543
BspDI	ATCGAT	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	268, 301, 525
Bst2UI	CCWGG	3 cut(s)	104, 412, 423
Bst4CI	ACNGT	2 cut(s)	317, 508
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	340, 590
BstDEI	CTNAG	3 cut(s)	197, 379, 551
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	271, 304, 528
BstMAI	GTCTC	2 cut(s)	9, 93
BstMBI	GATC	3 cut(s)	268, 301, 525
BstMCI	CGRYCG	1 cut(s)	596
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 241, 262
BstNI	CCWGG	3 cut(s)	104, 412, 423
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	3 cut(s)	102, 410, 421
BstV1I	GCAGC	2 cut(s)	238, 329
BstV2I	GAAGAC	2 cut(s)	453, 507
Bsu15I	ATCGAT	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	300
BtsI	GCAGTG	2 cut(s)	230, 600
BtsIMutI	CAGTG	3 cut(s)	230, 451, 600
Cac8I	GCNNGC	2 cut(s)	340, 590
CaiI	CAGNNNCTG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	384, 472, 508
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	4 cut(s)	78, 311, 339, 496
CviJI	RGCY	8 cut(s)	14, 201, 207, 219, 229, 265, 550, 588
CviKI_1	RGCY	8 cut(s)	14, 201, 207, 219, 229, 265, 550, 588
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	197, 379, 551
DpnI	GATC	3 cut(s)	270, 303, 527
DpnII	GATC	3 cut(s)	268, 301, 525
DrdI	GACNNNNNNGTC	2 cut(s)	320, 543
DseDI	GACNNNNNNGTC	2 cut(s)	320, 543
EciI	GGCGGA	2 cut(s)	243, 430
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	384, 472, 508
Eco88I	CYCGRG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	3 cut(s)	102, 410, 421
FaeI	CATG	4 cut(s)	81, 314, 342, 499
FaiI	YATR	6 cut(s)	11, 79, 116, 312, 340, 497
FatI	CATG	4 cut(s)	77, 310, 338, 495
FbaI	TGATCA	2 cut(s)	268, 525
Fnu4HI	GCNGC	3 cut(s)	227, 257, 343
Fsp4HI	GCNGC	3 cut(s)	227, 257, 343
FspBI	CTAG	2 cut(s)	204, 332
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	227, 257, 343
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	2 cut(s)	473, 560
HaeII	RGCGCY	1 cut(s)	196
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	81, 314, 342, 499
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	170, 307, 418
HpaII	CCGG	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	306, 598
Hpy188III	TCNNGA	3 cut(s)	311, 529, 572
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	317, 508
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	3 cut(s)	148, 160, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 241, 262
HpyF3I	CTNAG	3 cut(s)	197, 379, 551
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	4 cut(s)	81, 314, 342, 499
HspAI	GCGC	1 cut(s)	193
Ksp22I	TGATCA	2 cut(s)	268, 525
Kzo9I	GATC	3 cut(s)	268, 301, 525
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	238, 329
LweI	GCATC	2 cut(s)	116, 157
MaeI	CTAG	2 cut(s)	204, 332
MaeII	ACGT	1 cut(s)	390
MalI	GATC	3 cut(s)	270, 303, 527
MboI	GATC	3 cut(s)	268, 301, 525
MboII	GAAGA	5 cut(s)	199, 412, 448, 453, 512
MluCI	AATT	4 cut(s)	281, 286, 346, 563
MmeI	TCCRAC	2 cut(s)	411, 576
MnlI	CCTC	7 cut(s)	62, 113, 216, 450, 463, 485, 553
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	3 cut(s)	71, 296, 607
MslI	CAYNNNNRTG	2 cut(s)	14, 315
MspA1I	CMGCKG	1 cut(s)	550
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	104, 412, 423
MvaI	CCWGG	3 cut(s)	104, 412, 423
MwoI	GCNNNNNNNGC	3 cut(s)	232, 241, 262
NdeII	GATC	3 cut(s)	268, 301, 525
NlaIII	CATG	4 cut(s)	81, 314, 342, 499
NlaIV	GGNNCC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	170, 307, 418
PflFI	GACNNNGTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	228, 258, 344
PpuMI	RGGWCCY	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	3 cut(s)	102, 410, 421
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	3 cut(s)	102, 410, 421
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	3 cut(s)	384, 472, 508
PspPPI	RGGWCCY	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	550
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	14, 315
SaqAI	TTAA	3 cut(s)	71, 296, 607
SatI	GCNGC	3 cut(s)	227, 257, 343
Sau3AI	GATC	3 cut(s)	268, 301, 525
Sau96I	GGNCC	3 cut(s)	384, 472, 508
ScrFI	CCNGG	3 cut(s)	104, 412, 423
SfaNI	GCATC	2 cut(s)	116, 157
SinI	GGWCC	3 cut(s)	384, 472, 508
SmiMI	CAYNNNNRTG	2 cut(s)	14, 315
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	281, 286, 346, 563
SsiI	CCGC	5 cut(s)	254, 257, 320, 415, 592
SspMI	CTAG	2 cut(s)	204, 332
StyD4I	CCNGG	3 cut(s)	102, 410, 421
TaaI	ACNGT	2 cut(s)	317, 508
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	2 cut(s)	300, 366
TasI	AATT	4 cut(s)	281, 286, 346, 563
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	3 cut(s)	170, 307, 418
Tru1I	TTAA	3 cut(s)	71, 296, 607
Tru9I	TTAA	3 cut(s)	71, 296, 607
TscAI	CASTG	3 cut(s)	237, 451, 607
TseI	GCWGC	2 cut(s)	226, 342
TspDTI	ATGAA	3 cut(s)	56, 124, 453
TspRI	CASTG	3 cut(s)	237, 451, 607
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	384, 472, 508
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	204, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.