Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06120 |
| fragaria_vesca | FvH4_4g14530 |
| malus_domestica | MD13G1184300.v1.1 MD16G1184500.v1.1 |
| prunus_persica | Prupe.1G151800_v2.0.a1 |
| pyrus_communis | pycom13g15880 pycom16g15500 |
| rosa_chinensis | RchiOBHm_Chr4g0418301 |
| rosa_laevigata | RLG00000007879 |
| rosa_roxburghii | Rroxscaffold_5G00361470 |
| rosa_rugosa | Rorug04G0151900 |
| rosa_samantha | Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000 |
| rosa_wichuraiana | Rw4G018130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AccI | GTMKAC | 1 cut(s) | 300 |
| AcsI | RAATTY | 1 cut(s) | 131 |
| AgsI | TTSAA | 4 cut(s) | 283, 406, 581, 587 |
| AluBI | AGCT | 4 cut(s) | 14, 335, 344, 556 |
| AluI | AGCT | 4 cut(s) | 14, 335, 344, 556 |
| Alw26I | GTCTC | 2 cut(s) | 9, 93 |
| Ama87I | CYCGRG | 1 cut(s) | 385 |
| ApeKI | GCWGC | 1 cut(s) | 498 |
| ApoI | RAATTY | 1 cut(s) | 131 |
| AspLEI | GCGC | 1 cut(s) | 600 |
| AspS9I | GGNCC | 2 cut(s) | 390, 478 |
| AsuHPI | GGTGA | 1 cut(s) | 299 |
| AvaI | CYCGRG | 1 cut(s) | 385 |
| AvaII | GGWCC | 2 cut(s) | 390, 478 |
| BbsI | GAAGAC | 1 cut(s) | 513 |
| BbvCI | CCTCAGC | 1 cut(s) | 237 |
| BbvI | GCAGC | 1 cut(s) | 510 |
| BccI | CCATC | 2 cut(s) | 256, 318 |
| BclI | TGATCA | 2 cut(s) | 265, 318 |
| BcoDI | GTCTC | 2 cut(s) | 9, 93 |
| BfaI | CTAG | 2 cut(s) | 201, 332 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BglII | AGATCT | 1 cut(s) | 381 |
| BisI | GCNGC | 1 cut(s) | 499 |
| BlpI | GCTNAGC | 1 cut(s) | 557 |
| BlsI | GCNGC | 1 cut(s) | 500 |
| Bme18I | GGWCC | 2 cut(s) | 390, 478 |
| BmeT110I | CYCGRG | 1 cut(s) | 385 |
| BmgT120I | GGNCC | 2 cut(s) | 390, 478 |
| BmiI | GGNNCC | 1 cut(s) | 391 |
| BmsI | GCATC | 2 cut(s) | 116, 157 |
| BpiI | GAAGAC | 1 cut(s) | 513 |
| BpmI | CTGGAG | 3 cut(s) | 342, 479, 566 |
| Bpu10I | CCTNAGC | 2 cut(s) | 194, 237 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 557 |
| BsaI | GGTCTC | 1 cut(s) | 93 |
| Bse1I | ACTGG | 4 cut(s) | 224, 359, 549, 576 |
| BseMII | CTCAG | 3 cut(s) | 251, 548, 615 |
| BseNI | ACTGG | 4 cut(s) | 224, 359, 549, 576 |
| BseXI | GCAGC | 1 cut(s) | 510 |
| BsiHKCI | CYCGRG | 1 cut(s) | 385 |
| BsmAI | GTCTC | 2 cut(s) | 9, 93 |
| Bso31I | GGTCTC | 1 cut(s) | 93 |
| BsoBI | CYCGRG | 1 cut(s) | 385 |
| Bsp143I | GATC | 3 cut(s) | 265, 318, 381 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 557 |
| BspCNI | CTCAG | 3 cut(s) | 250, 549, 614 |
| BspLI | GGNNCC | 1 cut(s) | 391 |
| BspQI | GCTCTTC | 1 cut(s) | 182 |
| BspTNI | GGTCTC | 1 cut(s) | 93 |
| BsrI | ACTGG | 4 cut(s) | 224, 359, 549, 576 |
| BssMI | GATC | 3 cut(s) | 265, 318, 381 |
| Bst4CI | ACNGT | 2 cut(s) | 162, 514 |
| Bst6I | CTCTTC | 1 cut(s) | 182 |
| BstDEI | CTNAG | 4 cut(s) | 194, 237, 557, 601 |
| BstHHI | GCGC | 1 cut(s) | 600 |
| BstKTI | GATC | 3 cut(s) | 268, 321, 384 |
| BstMAI | GTCTC | 2 cut(s) | 9, 93 |
| BstMBI | GATC | 3 cut(s) | 265, 318, 381 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 341, 463, 606 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 1 cut(s) | 510 |
| BstV2I | GAAGAC | 1 cut(s) | 513 |
| BstX2I | RGATCY | 1 cut(s) | 381 |
| BstYI | RGATCY | 1 cut(s) | 381 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 510 |
| CfoI | GCGC | 1 cut(s) | 600 |
| Cfr13I | GGNCC | 2 cut(s) | 390, 478 |
| CviAII | CATG | 2 cut(s) | 314, 502 |
| DdeI | CTNAG | 4 cut(s) | 194, 237, 557, 601 |
| DpnI | GATC | 3 cut(s) | 267, 320, 383 |
| DpnII | GATC | 3 cut(s) | 265, 318, 381 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 1 cut(s) | 182 |
| EarI | CTCTTC | 1 cut(s) | 182 |
| Eco31I | GGTCTC | 1 cut(s) | 93 |
| Eco47I | GGWCC | 2 cut(s) | 390, 478 |
| Eco88I | CYCGRG | 1 cut(s) | 385 |
| EcoO109I | RGGNCCY | 1 cut(s) | 478 |
| EcoRI | GAATTC | 1 cut(s) | 131 |
| FaeI | CATG | 2 cut(s) | 317, 505 |
| FaiI | YATR | 6 cut(s) | 11, 116, 315, 338, 503, 520 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 598 |
| FatI | CATG | 2 cut(s) | 313, 501 |
| FbaI | TGATCA | 2 cut(s) | 265, 318 |
| FblI | GTMKAC | 1 cut(s) | 300 |
| Fnu4HI | GCNGC | 1 cut(s) | 499 |
| Fsp4HI | GCNGC | 1 cut(s) | 499 |
| FspBI | CTAG | 2 cut(s) | 201, 332 |
| GlaI | GCGC | 1 cut(s) | 599 |
| GluI | GCNGC | 1 cut(s) | 499 |
| GsuI | CTGGAG | 3 cut(s) | 342, 479, 566 |
| HhaI | GCGC | 1 cut(s) | 600 |
| Hin1II | CATG | 2 cut(s) | 317, 505 |
| Hin6I | GCGC | 1 cut(s) | 598 |
| HinP1I | GCGC | 1 cut(s) | 598 |
| HinfI | GANTC | 1 cut(s) | 170 |
| HphI | GGTGA | 1 cut(s) | 299 |
| Hpy166II | GTNNAC | 1 cut(s) | 301 |
| Hpy188I | TCNGA | 2 cut(s) | 420, 604 |
| Hpy188III | TCNNGA | 1 cut(s) | 535 |
| Hpy8I | GTNNAC | 1 cut(s) | 301 |
| HpyAV | CCTTC | 1 cut(s) | 491 |
| HpyCH4III | ACNGT | 2 cut(s) | 162, 514 |
| HpyCH4V | TGCA | 1 cut(s) | 148 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 341, 463, 606 |
| HpyF3I | CTNAG | 4 cut(s) | 194, 237, 557, 601 |
| Hsp92II | CATG | 2 cut(s) | 317, 505 |
| HspAI | GCGC | 1 cut(s) | 598 |
| Ksp22I | TGATCA | 2 cut(s) | 265, 318 |
| Kzo9I | GATC | 3 cut(s) | 265, 318, 381 |
| LguI | GCTCTTC | 1 cut(s) | 182 |
| LmnI | GCTCC | 1 cut(s) | 341 |
| LpnPI | CCDG | 6 cut(s) | 237, 372, 414, 443, 530, 557 |
| Lsp1109I | GCAGC | 1 cut(s) | 510 |
| LweI | GCATC | 2 cut(s) | 116, 157 |
| MaeI | CTAG | 2 cut(s) | 201, 332 |
| MaeIII | GTNAC | 1 cut(s) | 350 |
| MalI | GATC | 3 cut(s) | 267, 320, 383 |
| MboI | GATC | 3 cut(s) | 265, 318, 381 |
| MboII | GAAGA | 5 cut(s) | 42, 199, 391, 418, 518 |
| MflI | RGATCY | 1 cut(s) | 381 |
| MluCI | AATT | 7 cut(s) | 131, 143, 277, 283, 289, 435, 447 |
| MnlI | CCTC | 6 cut(s) | 113, 177, 246, 456, 469, 559 |
| MseI | TTAA | 2 cut(s) | 71, 288 |
| MslI | CAYNNNNRTG | 2 cut(s) | 14, 312 |
| MspA1I | CMGCKG | 1 cut(s) | 556 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 341, 463, 606 |
| NdeII | GATC | 3 cut(s) | 265, 318, 381 |
| NlaIII | CATG | 2 cut(s) | 317, 505 |
| NlaIV | GGNNCC | 1 cut(s) | 391 |
| PciSI | GCTCTTC | 1 cut(s) | 182 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 1 cut(s) | 500 |
| PpuMI | RGGWCCY | 1 cut(s) | 478 |
| Psp5II | RGGWCCY | 1 cut(s) | 478 |
| PspN4I | GGNNCC | 1 cut(s) | 391 |
| PspPI | GGNCC | 2 cut(s) | 390, 478 |
| PspPPI | RGGWCCY | 1 cut(s) | 478 |
| PsuI | RGATCY | 1 cut(s) | 381 |
| PvuII | CAGCTG | 1 cut(s) | 556 |
| RseI | CAYNNNNRTG | 2 cut(s) | 14, 312 |
| SapI | GCTCTTC | 1 cut(s) | 182 |
| SaqAI | TTAA | 2 cut(s) | 71, 288 |
| SatI | GCNGC | 1 cut(s) | 499 |
| Sau3AI | GATC | 3 cut(s) | 265, 318, 381 |
| Sau96I | GGNCC | 2 cut(s) | 390, 478 |
| SetI | ASST | 6 cut(s) | 16, 124, 337, 346, 480, 558 |
| SfaNI | GCATC | 2 cut(s) | 116, 157 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SinI | GGWCC | 2 cut(s) | 390, 478 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 14, 312 |
| Sse9I | AATT | 7 cut(s) | 131, 143, 277, 283, 289, 435, 447 |
| SspMI | CTAG | 2 cut(s) | 201, 332 |
| TaaI | ACNGT | 2 cut(s) | 162, 514 |
| TaqI | TCGA | 1 cut(s) | 372 |
| TasI | AATT | 7 cut(s) | 131, 143, 277, 283, 289, 435, 447 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| Tru1I | TTAA | 2 cut(s) | 71, 288 |
| Tru9I | TTAA | 2 cut(s) | 71, 288 |
| TscAI | CASTG | 2 cut(s) | 366, 517 |
| TseI | GCWGC | 1 cut(s) | 498 |
| TspDTI | ATGAA | 4 cut(s) | 56, 124, 459, 473 |
| TspGWI | ACGGA | 1 cut(s) | 196 |
| TspRI | CASTG | 2 cut(s) | 366, 517 |
| VpaK11BI | GGWCC | 2 cut(s) | 390, 478 |
| XapI | RAATTY | 1 cut(s) | 131 |
| XmiI | GTMKAC | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 201, 332 |