helix loop helix domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06120 |
| fragaria_vesca | FvH4_4g14530 |
| malus_domestica | MD13G1184300.v1.1 MD16G1184500.v1.1 |
| prunus_persica | Prupe.1G151800_v2.0.a1 |
| pyrus_communis | pycom13g15880 pycom16g15500 |
| rosa_chinensis | RchiOBHm_Chr4g0418301 |
| rosa_laevigata | RLG00000007879 |
| rosa_roxburghii | Rroxscaffold_5G00361470 |
| rosa_rugosa | Rorug04G0151900 |
| rosa_samantha | Rh4AG213400 Rh4BG217200 Rh4CG225100 Rh4DG212000 |
| rosa_wichuraiana | Rw4G018130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 259 |
| AciI | CCGC | 1 cut(s) | 22 |
| AclWI | GGATC | 1 cut(s) | 346 |
| AfaI | GTAC | 3 cut(s) | 251, 271, 311 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 319 |
| AgsI | TTSAA | 2 cut(s) | 38, 505 |
| AjnI | CCWGG | 1 cut(s) | 538 |
| AluBI | AGCT | 6 cut(s) | 65, 95, 221, 305, 331, 434 |
| AluI | AGCT | 6 cut(s) | 65, 95, 221, 305, 331, 434 |
| AlwI | GGATC | 1 cut(s) | 346 |
| Ama87I | CYCGRG | 1 cut(s) | 263 |
| AvaI | CYCGRG | 1 cut(s) | 263 |
| BanI | GGYRCC | 1 cut(s) | 259 |
| BccI | CCATC | 2 cut(s) | 208, 576 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 1 cut(s) | 540 |
| BfaI | CTAG | 2 cut(s) | 96, 573 |
| BfmI | CTRYAG | 1 cut(s) | 75 |
| Bme1390I | CCNGG | 1 cut(s) | 540 |
| BmeT110I | CYCGRG | 1 cut(s) | 263 |
| BmiI | GGNNCC | 1 cut(s) | 261 |
| BmrFI | CCNGG | 1 cut(s) | 540 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 520, 552 |
| Bpu10I | CCTNAGC | 1 cut(s) | 324 |
| BpuEI | CTTGAG | 1 cut(s) | 495 |
| BsaJI | CCNNGG | 3 cut(s) | 264, 355, 539 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 328, 358 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 319 |
| BseBI | CCWGG | 1 cut(s) | 540 |
| BseDI | CCNNGG | 3 cut(s) | 264, 355, 539 |
| BseGI | GGATG | 3 cut(s) | 354, 562, 568 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 319 |
| BseMII | CTCAG | 4 cut(s) | 213, 297, 417, 490 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BshNI | GGYRCC | 1 cut(s) | 259 |
| BsiHKCI | CYCGRG | 1 cut(s) | 263 |
| BslFI | GGGAC | 1 cut(s) | 356 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 319 |
| BsmFI | GGGAC | 1 cut(s) | 356 |
| BsmI | GAATGC | 1 cut(s) | 235 |
| BsoBI | CYCGRG | 1 cut(s) | 263 |
| Bsp143I | GATC | 2 cut(s) | 351, 445 |
| Bsp19I | CCATGG | 1 cut(s) | 355 |
| BspACI | CCGC | 1 cut(s) | 22 |
| BspCNI | CTCAG | 4 cut(s) | 214, 298, 418, 489 |
| BspHI | TCATGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 261 |
| BspPI | GGATC | 1 cut(s) | 346 |
| BspT107I | GGYRCC | 1 cut(s) | 259 |
| BssECI | CCNNGG | 3 cut(s) | 264, 355, 539 |
| BssMI | GATC | 2 cut(s) | 351, 445 |
| BssT1I | CCWWGG | 1 cut(s) | 355 |
| Bst2UI | CCWGG | 1 cut(s) | 540 |
| Bst4CI | ACNGT | 2 cut(s) | 106, 166 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 123 |
| BstDEI | CTNAG | 5 cut(s) | 222, 306, 324, 426, 476 |
| BstDSI | CCRYGG | 1 cut(s) | 355 |
| BstF5I | GGATG | 3 cut(s) | 354, 562, 568 |
| BstKTI | GATC | 2 cut(s) | 354, 448 |
| BstMBI | GATC | 2 cut(s) | 351, 445 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstNI | CCWGG | 1 cut(s) | 540 |
| BstNSI | RCATGY | 1 cut(s) | 475 |
| BstSCI | CCNGG | 1 cut(s) | 538 |
| BstSFI | CTRYAG | 1 cut(s) | 75 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 362 |
| BtgI | CCRYGG | 1 cut(s) | 355 |
| BtsCI | GGATG | 3 cut(s) | 354, 562, 568 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 123 |
| CciI | TCATGA | 1 cut(s) | 205 |
| Csp6I | GTAC | 3 cut(s) | 250, 270, 310 |
| CviAII | CATG | 6 cut(s) | 200, 206, 278, 356, 408, 472 |
| CviQI | GTAC | 3 cut(s) | 250, 270, 310 |
| DdeI | CTNAG | 5 cut(s) | 222, 306, 324, 426, 476 |
| DpnI | GATC | 2 cut(s) | 353, 447 |
| DpnII | GATC | 2 cut(s) | 351, 445 |
| Eco130I | CCWWGG | 1 cut(s) | 355 |
| Eco88I | CYCGRG | 1 cut(s) | 263 |
| EcoRII | CCWGG | 1 cut(s) | 538 |
| EcoT14I | CCWWGG | 1 cut(s) | 355 |
| ErhI | CCWWGG | 1 cut(s) | 355 |
| FaeI | CATG | 6 cut(s) | 203, 209, 281, 359, 411, 475 |
| FaqI | GGGAC | 1 cut(s) | 356 |
| FatI | CATG | 6 cut(s) | 199, 205, 277, 355, 407, 471 |
| FokI | GGATG | 3 cut(s) | 361, 555, 569 |
| FspBI | CTAG | 2 cut(s) | 96, 573 |
| Hin1II | CATG | 6 cut(s) | 203, 209, 281, 359, 411, 475 |
| HinfI | GANTC | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 1 cut(s) | 427 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| HpyAV | CCTTC | 4 cut(s) | 25, 334, 478, 499 |
| HpyCH4III | ACNGT | 2 cut(s) | 106, 166 |
| HpyCH4IV | ACGT | 2 cut(s) | 369, 382 |
| HpyCH4V | TGCA | 2 cut(s) | 275, 407 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 5 cut(s) | 222, 306, 324, 426, 476 |
| HpySE526I | ACGT | 2 cut(s) | 369, 382 |
| Hsp92II | CATG | 6 cut(s) | 203, 209, 281, 359, 411, 475 |
| Kzo9I | GATC | 2 cut(s) | 351, 445 |
| LmnI | GCTCC | 1 cut(s) | 328 |
| LpnPI | CCDG | 4 cut(s) | 75, 135, 525, 552 |
| MaeI | CTAG | 2 cut(s) | 96, 573 |
| MaeII | ACGT | 2 cut(s) | 369, 382 |
| MaeIII | GTNAC | 1 cut(s) | 365 |
| MalI | GATC | 2 cut(s) | 353, 447 |
| MboI | GATC | 2 cut(s) | 351, 445 |
| MboII | GAAGA | 1 cut(s) | 223 |
| MluCI | AATT | 2 cut(s) | 421, 437 |
| MseI | TTAA | 1 cut(s) | 468 |
| MslI | CAYNNNNRTG | 1 cut(s) | 204 |
| MspR9I | CCNGG | 1 cut(s) | 540 |
| Mva1269I | GAATGC | 1 cut(s) | 235 |
| MvaI | CCWGG | 1 cut(s) | 540 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NcoI | CCATGG | 1 cut(s) | 355 |
| NdeII | GATC | 2 cut(s) | 351, 445 |
| NlaIII | CATG | 6 cut(s) | 203, 209, 281, 359, 411, 475 |
| NlaIV | GGNNCC | 1 cut(s) | 261 |
| NspI | RCATGY | 1 cut(s) | 475 |
| PagI | TCATGA | 1 cut(s) | 205 |
| PctI | GAATGC | 1 cut(s) | 235 |
| PfeI | GAWTC | 1 cut(s) | 281 |
| Psp6I | CCWGG | 1 cut(s) | 538 |
| PspGI | CCWGG | 1 cut(s) | 538 |
| PspN4I | GGNNCC | 1 cut(s) | 261 |
| RsaI | GTAC | 3 cut(s) | 251, 271, 311 |
| RsaNI | GTAC | 3 cut(s) | 250, 270, 310 |
| RseI | CAYNNNNRTG | 1 cut(s) | 204 |
| SaqAI | TTAA | 1 cut(s) | 468 |
| Sau3AI | GATC | 2 cut(s) | 351, 445 |
| ScrFI | CCNGG | 1 cut(s) | 540 |
| SfcI | CTRYAG | 1 cut(s) | 75 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 204 |
| SmlI | CTYRAG | 2 cut(s) | 6, 510 |
| SmoI | CTYRAG | 2 cut(s) | 6, 510 |
| Sse9I | AATT | 2 cut(s) | 421, 437 |
| SsiI | CCGC | 1 cut(s) | 22 |
| SspMI | CTAG | 2 cut(s) | 96, 573 |
| StyD4I | CCNGG | 1 cut(s) | 538 |
| StyI | CCWWGG | 1 cut(s) | 355 |
| TaaI | ACNGT | 2 cut(s) | 106, 166 |
| TaiI | ACGT | 2 cut(s) | 372, 385 |
| TaqI | TCGA | 1 cut(s) | 453 |
| TasI | AATT | 2 cut(s) | 421, 437 |
| TfiI | GAWTC | 1 cut(s) | 281 |
| Tru1I | TTAA | 1 cut(s) | 468 |
| Tru9I | TTAA | 1 cut(s) | 468 |
| TspDTI | ATGAA | 2 cut(s) | 188, 497 |
| XceI | RCATGY | 1 cut(s) | 475 |
| XspI | CTAG | 2 cut(s) | 96, 573 |